DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000309 cel-miR-253* 178060 T01G1.3 ccAGUCACA--AUCACUC-CACAc || | || || |||| |||| ucUCCGCGUCAUAAUGAGAGUGUu 2 20 4 27 [ce6:IV:11365882-11365905:-] 0.5498 122 0 -10.79 -0.3067 MIMAT0015239 cel-miR-786* 178060 T01G1.3 cauUUAUGGGGUUGA--CUAUAAgc |||||:: || | |||||| gccAAUACUUAAAAUUAGAUAUUgc 3 21 186 210 [ce6:IV:11365699-11365723:-] 0.4473 143 0 -11.14 -0.1020 MIMAT0004235 cel-miR-800 178060 T01G1.3 gccgucugUUAAAGGCUCAAAc ||| ||||||| acuuuauaAAUAAACGAGUUUu 2 15 290 311 [ce6:IV:11365598-11365619:-] 0.4473 146 7 -8.84 -0.7953 MIMAT0006587 cel-miR-1820 178060 T01G1.3 cuugUAGUAGCUUUUUGUUAGUUUu ||:||| ||: |||||| uuugAUUAUC----AAUUAUCAAAa 2 22 47 67 [ce6:IV:11365842-11365862:-] 0.5498 124 6 -8.79 -0.1755 MIMAT0011436 cel-miR-2210* 178060 T01G1.3 cacccauCUCGUUA-GCUGAAAu | |:||| ||||||| uuauugcGUGUAAUACGACUUUc 2 16 143 165 [ce6:IV:11365744-11365766:-] 0.4473 154 7 -11.95 -0.7173 MIMAT0011450 cel-miR-1832b 178060 T01G1.3 uagUCGCUUAGCGAGACGGGUGa | |||:|: :|:| ||||| auaAACGAGUU-UUUUUCCCACa 2 21 299 320 [ce6:IV:11365589-11365610:-] 0.4473 130 0 -18.71 -0.1458 MIMAT0011457 cel-miR-2218b 178060 T01G1.3 cuuUUACU-ACAUCAAACAUCAGa ||| | | | |||||||| uguAAUCAUUCUUUGUUGUAGUCa 2 21 239 262 [ce6:IV:11365647-11365670:-] 0.4473 151 7 -9.67 -1.2366 MIMAT0000032 cel-miR-60 178060 T01G1.3 acuugaucuuuuacacGUAUUAu |||||| cauucuuuguuguaguCAUAAUa 2 8 245 267 [ce6:IV:11365642-11365664:-] 0.4473 120 6 -6.89 -0.2380 MIMAT0000038 cel-miR-66 178060 T01G1.3 aguGUAGGGAUUAGUCA-CAGUAc |||:|:| :|: || ||||| aauCAUUCUUUGUU-GUAGUCAUa 2 21 242 264 [ce6:IV:11365645-11365667:-] 0.4473 126 0 -13.75 -1.1817 MIMAT0000058 cel-miR-85 178060 T01G1.3 cguGCUGAAAAG-UUUAUGAAACAu | | ||||| | |:|||||| uccCAAAUUUUCUUACUGCUUUGUa 2 22 218 242 [ce6:IV:11365667-11365691:-] 0.4473 148 6 -13.80 -0.1981 MIMAT0000304 cel-miR-248 178060 T01G1.3 acucgcaAUAGGCACGUGCACAUa || :: | ::|||||| ucccaaaUAAUUAU-UGCGUGUAa 2 18 133 155 [ce6:IV:11365754-11365776:-] 0.4473 127 6 -9.97 -0.1524 MIMAT0000304 cel-miR-248 178060 T01G1.3 acucgcaauaggcacguGCACAUa |||||| ugcuucguguguaaaauCGUGUAa 2 8 100 123 [ce6:IV:11365786-11365809:-] 0.5942 120 6 -13.88 -0.1948 MIMAT0000307 cel-miR-251 178060 T01G1.3 uuaUUCUCGCCGUGGUGAUGAAUu || | : ::||| |||||| ccaAAAAUUCCUGCCAAUACUUAa 2 22 174 197 [ce6:IV:11365712-11365735:-] 0.4473 129 6 -10.75 -0.1056 MIMAT0000308 cel-miR-252 178060 T01G1.3 aauggacgccgugaugAUGAAUa |||||| caaaaauuccugccaaUACUUAa 2 8 175 197 [ce6:IV:11365712-11365734:-] 0.4473 120 6 -12.81 -0.1056 MIMAT0000310 cel-miR-254 178060 T01G1.3 ggaugucagcgcuuucUAAACGu |||||| gaauauauuauauuucAUUUGCu 2 8 81 103 [ce6:IV:11365806-11365828:-] 0.5942 120 6 -3.82 -0.1405 MIMAT0000700 cel-miR-358 178060 T01G1.3 cuggAACUGUCCCUAUGGUUa || || ||:|||| ucaaUUAUCAAAAAUGCCAAc 2 18 55 75 [ce6:IV:11365834-11365854:-] 0.5498 129 0 -7.97 -0.1153 MIMAT0004225 cel-miR-790 178060 T01G1.3 gcgccacaagcgcucACGGUUc |||||| aucaauuaucaaaaaUGCCAAc 2 8 54 75 [ce6:IV:11365834-11365855:-] 0.5498 120 6 -13.28 -0.3748 MIMAT0004226 cel-miR-791 178060 T01G1.3 acggaauagacgccucACGGUUu |||||| uaucaauuaucaaaaaUGCCAAc 2 8 53 75 [ce6:IV:11365834-11365856:-] 0.5498 120 6 -8.49 -0.3748 MIMAT0004227 cel-miR-792 178060 T01G1.3 agacuuucaacuucucUAAAGUu |||||| auuuugaauauauuauAUUUCAu 2 8 76 98 [ce6:IV:11365811-11365833:-] 0.5498 120 6 -5.71 -0.1597

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score sec-31 RAID00102041 cel-miR-790-5p miRNA MIMAT0004225 sec-31 mRNA 178060 Prediction 0.1828 sec-31 RAID00343992 cel-miR-251 miRNA MIMAT0000307 sec-31 mRNA 178060 Prediction 0.1828 sec-31 RAID00412364 cel-miR-792-3p miRNA MIMAT0004227 sec-31 mRNA 178060 Prediction 0.1828 sec-31 RAID01493665 cel-miR-248 miRNA MIMAT0000304 sec-31 mRNA 178060 Prediction 0.1828 sec-31 RAID01504593 cel-miR-254-3p miRNA MIMAT0000310 sec-31 mRNA 178060 Prediction 0.1828 sec-31 RAID01538288 cel-miR-358-3p miRNA MIMAT0000700 sec-31 mRNA 178060 Prediction 0.1828 sec-31 RAID01595510 cel-miR-79-3p miRNA MIMAT0000051 sec-31 mRNA 178060 Prediction 0.1828 sec-31 RAID02003324 cel-miR-252-5p miRNA MIMAT0000308 sec-31 mRNA 178060 Prediction 0.1828 sec-31 RAID02238971 cel-miR-791-3p miRNA MIMAT0004226 sec-31 mRNA 178060 Prediction 0.1828 sec-31 RAID02346094 cel-miR-60-3p miRNA MIMAT0000032 sec-31 mRNA 178060 Prediction 0.2202 sec-31 RAID02621565 cel-miR-85-3p miRNA MIMAT0000058 sec-31 mRNA 178060 Prediction 0.1828 sec-31 RAID03665161 cel-miR-66-5p miRNA MIMAT0000038 sec-31 mRNA 178060 Prediction 0.1828