DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015112 cel-miR-229* 174290 T05H10.1 gauacugugggcuauGGAAAGa |||||| guuuuuucauaacucCCUUUCa 2 8 71 92 [ce6:II:8047028-8047049:+] 0.4834 120 6 -8.75 -0.2588 MIMAT0015116 cel-miR-240* 174290 T05H10.1 guaagaucagaguUUUAGGAGc |||||||| aaagauacaaauuAAAUCCUCa 2 10 92 113 [ce6:II:8047049-8047070:+] 0.5002 145 7 -9.51 -1.3000 MIMAT0000321 cel-miR-265 174290 T05H10.1 uaugguGGGAAGGAGGGAGu :| | ||||||: guuuuuUCAUAACUCCCUUu 2 15 71 90 [ce6:II:8047028-8047047:+] 0.4834 126 0 -13.94 -0.1093 MIMAT0011425 cel-miR-2207 174290 T05H10.1 gaAUAUGUGUCAGA-GUUAAGUGu ||| : ::|||| ||||||: auUAUUUUUGGUCUAAAAUUCAUg 2 22 48 71 [ce6:II:8047005-8047028:+] 0.4665 144 0 -11.29 -0.1244 MIMAT0011458 cel-miR-2218b* 174290 T05H10.1 agaGUGAUGUUU-GAUGUUUAAa | :| |||| |||||||| cucCCUUUCAAAGAUACAAAUUa 2 20 83 105 [ce6:II:8047040-8047062:+] 0.5002 158 7 -12.84 -1.2537 MIMAT0011458 cel-miR-2218b* 174290 T05H10.1 agagugauguuugauGUUUAAa |||||| aucgucucguuucuuCAAAUUg 2 8 306 327 [ce6:II:8047263-8047284:+] 0.5000 120 6 -11.93 -0.1212 MIMAT0011461 cel-miR-2220* 174290 T05H10.1 cuAUUUAUCAAAUACCAGAAUg | | || ||| |||||| | uaUCAUUA-UUUUUGGUCUAAa 2 21 44 64 [ce6:II:8047001-8047021:+] 0.4665 130 0 -8.02 -0.1490 MIMAT0000002 cel-lin-4 174290 T05H10.1 agugugaacuccaGAGUCCCu ||||||| gagaaugauccaaCUCAGGGa 2 9 380 400 [ce6:II:8047337-8047357:+] 0.5000 140 7 -16.72 -1.2133 MIMAT0000042 cel-miR-70 174290 T05H10.1 uacCUUUGUGGUUGCUGC-AUAAu | :|| || ::|||| |||| guuGUGAC-CCUGUGACGUUAUUu 2 21 207 229 [ce6:II:8047164-8047186:+] 0.5046 122 0 -13.69 -0.4360 MIMAT0000282 cel-miR-124 174290 T05H10.1 accguaaguggcgcACGGAAu |||||| auaacuauuuuauuUGCCUUu 2 8 130 150 [ce6:II:8047087-8047107:+] 0.5002 120 6 -8.43 -0.1619 MIMAT0000292 cel-miR-237 174290 T05H10.1 ucGACAAGCUCUUA--A----GAGUCCCu :| || |||||| | ||||||| uuUUAUUAGAGAAUGAUCCAACUCAGGGa 2 22 372 400 [ce6:II:8047329-8047357:+] 0.5000 151 7 -21.05 -1.2148 MIMAT0000310 cel-miR-254 174290 T05H10.1 ggaugucagcgcuuucUAAACGu |||||| ucuuuauaacuauuuuAUUUGCc 2 8 125 147 [ce6:II:8047082-8047104:+] 0.5002 120 6 -4.19 -0.2178 MIMAT0000314 cel-miR-259 174290 T05H10.1 acgaUGGUCUAA--UCCUACUCUAAa |::| | | | | ||||||| agggAUUAAAAUAAACGUUGAGAUUc 2 21 396 421 [ce6:II:8047353-8047378:+] 0.5000 147 7 -8.53 -0.5711 MIMAT0000701 cel-miR-359 174290 T05H10.1 aagcagucucuuucuGGUCACu |||||| aauaccuuugacuauCCAGUGa 2 8 178 199 [ce6:II:8047135-8047156:+] 0.5092 120 6 -11.96 -0.1552 MIMAT0000749 cel-lsy-6 174290 T05H10.1 gcUUUACGCAGAG----UAUGUUUu || | | |:|| ||||||| auAACUCCCUUUCAAAGAUACAAAu 2 20 79 103 [ce6:II:8047036-8047060:+] 0.5002 146 7 -7.07 -0.9620

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 T05H10.1; CELE_T05H10.1 cel-lin-4 374 402 AGUGUGAACUCCA--------GAGUCCCU- :|:| ||| |||||||| --UUAUUAGAGAAUGAUCCAACUCAGGGAU T05H10.1; CELE_T05H10.1 cel-miR-232 277 297 AGUG-GCGUCAAUUCUACGUAAAU :|| :|||||| :|||||| AUACUUGCAGUU---GUGCAUUC- T05H10.1; CELE_T05H10.1 cel-miR-237 361 402 UCGACAAG------------CUCUUAA------GAGUCCCU :||||: |||||| |||||||| -AUUGUUUCUUUUUUUAUUAGAGAAUGAUCCAACUCAGGGAU T05H10.1; CELE_T05H10.1 cel-miR-256 270 298 -AUGUCA---GAA----GAUACGUAAGGU |:|||| ||| :|:||||||| UUGCAGUAUACUUGCAGUUGUGCAUUCA- T05H10.1; CELE_T05H10.1 cel-miR-35 204 223 UGACGAUCAAAGGUGGGCCACU- :||:|: : |||| |||| UUUGUUG----UGACCCUGUGAC T05H10.1; CELE_T05H10.1 cel-miR-355 392 412 GUAUCGAGUCC--GAUUUUGUUU- |||||| :|||||:||| ----ACUCAGGGAUUAAAAUAAAC T05H10.1; CELE_T05H10.1 cel-miR-36 195 223 GUACGCUU----AAA---AGUGGGCCACU- |:||| || | |||| |||| --AGUGAAAAUUUUGUUGUGACCCUGUGAC T05H10.1; CELE_T05H10.1 cel-miR-37 204 223 UGACGUUCACAAGUGGGCCACU- :||: ||| |||| |||| UUUGUU-GUG---ACCCUGUGAC T05H10.1; CELE_T05H10.1 cel-miR-38 191 223 UGAGGUCAA----AAAGA------GGGCCACU- |||||| |||: ||| |||| -AUCCAGUGAAAAUUUUGUUGUGACCCUGUGAC T05H10.1; CELE_T05H10.1 cel-miR-39 236 272 GUUCG---ACUAA-------------AUGUGGGCCACU ||| ||||| |:|:|:|||| -UAGCUAUUGAUUUAUUCGAUUAACGUGCGCUCGGUU- T05H10.1; CELE_T05H10.1 cel-miR-40 235 272 AAUCG---ACUA-------------CAUGUGGGCCACU |||| |||| ||:|:|:|||| AUAGCUAUUGAUUUAUUCGAUUAACGUGCGCUCGGUU- T05H10.1; CELE_T05H10.1 cel-miR-41 195 223 AUCCACU----AAAA---AGUGGGCCACU- |||| ||| | |||| |||| --AGUGAAAAUUUUGUUGUGACCCUGUGAC T05H10.1; CELE_T05H10.1 cel-miR-42 203 223 -AGACAUCUACAAUUGGGCCACU- |:||| || |:|||| |||| UUUUGU---UG-UGACCCUGUGAC T05H10.1; CELE_T05H10.1 cel-miR-46 196 225 -ACUUCUCU-----CGCUGAGGUACUGU- |||| |:||| |::||||: GUGAAAAUUUUGUUGUGACCCUGUGACGU T05H10.1; CELE_T05H10.1 cel-miR-72 206 235 AGUCGAUAC-GG----UUGUAG---AACGGA |:|:|| || :||:|: ||||| --UGUUGUGACCCUGUGACGUUAUUUUGCCG T05H10.1; CELE_T05H10.1 cel-miR-73 210 236 UGACUU-GACGGAUGUAG---AACGGU- ||| |||: ||:|: |||||: -GUGACCCUGUG-ACGUUAUUUUGCCGA T05H10.1; CELE_T05H10.1 cel-miR-74 208 236 -ACAUCU-GACG--GUAA-AGAACGGU- |||: |||: |:|| |:|||||: UUGUGACCCUGUGACGUUAUUUUGCCGA T05H10.1; CELE_T05H10.1 cel-miR-784 257 286 AGAUGCAUGCGU-CUAAC---------ACGGU ||||:||| |:||| ||| --AACGUGCGCUCGGUUGCAGUAUACUUGCA- T05H10.1; CELE_T05H10.1 cel-miR-797 202 223 AGAAGAGUAACACUAACGACACUAU |:|::|||||| |||||| --AUUUUGUUGUGACC-CUGUGAC- T05H10.1; CELE_T05H10.1 cel-lin-4 380 400 agugugaacuccaGAGUCCCU |||||||| gagaatgatccaaCTCAGGGA T05H10.1; CELE_T05H10.1 cel-miR-232 277 297 agUG-GCGUCAAUUCUACGUAAau || :|||||| :|||||| atACTTGCAGTT---GTGCATTca T05H10.1; CELE_T05H10.1 cel-miR-237 372 400 ucgACAAGCUCUUA--A----GAGUCCCU | || |||||| | |||||||| tttTATTAGAGAATGATCCAACTCAGGGA T05H10.1; CELE_T05H10.1 cel-miR-256 271 298 AUGUCA---GAA----GAUACGUAAGgu |:|||| ||| :|:||||||| TGCAGTATACTTGCAGTTGTGCATTCaa T05H10.1; CELE_T05H10.1 cel-miR-35 200 221 ugacgAUCAAAGGUGGGCCACU | ||| : |||| |||| aaattTTGTTGTGACCCTGTGA T05H10.1; CELE_T05H10.1 cel-miR-355 388 410 guaUCGAGUCC--GAUUUUGUUU | |||||| :|||||:||| tccAACTCAGGGATTAAAATAAA T05H10.1; CELE_T05H10.1 cel-miR-36 194 221 GU-ACGCUUAAA-----AGUGGGCCACU || || ||||| | |||| |||| CAGTGAAAATTTTGTTGTGACCCTGTGA T05H10.1; CELE_T05H10.1 cel-miR-37 195 221 UGACGUU---CACA--AGUGGGCCACU | || || ||| | |||| |||| AGTGAAAATTTTGTTGTGACCCTGTGA T05H10.1; CELE_T05H10.1 cel-miR-38 190 221 ugAGGUCA-----AAAAGA-----GGGCCACU |||||| |||| | ||| |||| taTCCAGTGAAAATTTTGTTGTGACCCTGTGA T05H10.1; CELE_T05H10.1 cel-miR-39 247 272 guucgaCUAA----AUGUGGGCCAcu |||| |:|:|:|||| ttattcGATTAACGTGCGCTCGGTtg T05H10.1; CELE_T05H10.1 cel-miR-40 247 272 AAUCGACUA----CAUGUGGGCCAcu ||| : ||| ||:|:|:|||| TTATTCGATTAACGTGCGCTCGGTtg T05H10.1; CELE_T05H10.1 cel-miR-41 193 221 aucCAC---UAAAA----AGUGGGCCACU ||| ||||| | |||| |||| ccaGTGAAAATTTTGTTGTGACCCTGTGA T05H10.1; CELE_T05H10.1 cel-miR-42 204 221 AGACAUCUACAAUUGGGCCACU |:||| || |:|||| |||| TTTGT---TG-TGACCCTGTGA T05H10.1; CELE_T05H10.1 cel-miR-46 202 223 acuucucuCGCUGAGGUACUGu |:||| |::|||| attttgttGTGACCCTGTGACg T05H10.1; CELE_T05H10.1 cel-miR-72 212 234 agucGAUACGGUUGUAGAACGGa ||:|| |: :||:||||| gaccCTGTGACGTTATTTTGCCg T05H10.1; CELE_T05H10.1 cel-miR-73 209 234 ugACUUG---ACGGAUGUAGAACGGu ||| | || | :||:||||| tgTGACCCTGTGACGTTATTTTGCCg T05H10.1; CELE_T05H10.1 cel-miR-74 209 234 ACAUCUG----ACGGUAA-AGAACGGu ||| ||| || |:|| |:||||| TGT-GACCCTGTGACGTTATTTTGCCg T05H10.1; CELE_T05H10.1 cel-miR-784 276 294 AGAUGCAUGCGUCUAACACGgu | ||| | |||| |||||| TATACTT--GCAG-TTGTGCat T05H10.1; CELE_T05H10.1 cel-miR-797 200 223 agaAGAGUAACACUAACGACACUau |:|::|||||| |||||| aaaTTTTGTTGTGA-CCCTGTGAcg T05H10.1; CELE_T05H10.1 cel-lin-4 393 400 AGU--------------GUGAACUCCA--------GAGUCCCU :|:| ||| |||||||| CUGAUUGUUUCUUUUUUUAUUAGAGAAUGAUCCAACUCAGGGAU T05H10.1; CELE_T05H10.1 cel-miR-237 393 400 UC--GACAAG------------CUCUUAA------GAGUCCCU :||||: |||||| |||||||| CUGAUUGUUUCUUUUUUUAUUAGAGAAUGAUCCAACUCAGGGAU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score T05H10.1 RAID01885265 cel-miR-254-3p miRNA MIMAT0000310 T05H10.1 mRNA 174290 Prediction 0.1828 T05H10.1 RAID02541565 cel-miR-359 miRNA MIMAT0000701 T05H10.1 mRNA 174290 Prediction 0.1828 T05H10.1 RAID02591913 cel-lin-4-5p miRNA MIMAT0000002 T05H10.1 mRNA 174290 Prediction 0.1828 T05H10.1 RAID03009985 cel-miR-259-5p miRNA MIMAT0000314 T05H10.1 mRNA 174290 Prediction 0.1828 T05H10.1 RAID03323998 cel-miR-124-3p miRNA MIMAT0000282 T05H10.1 mRNA 174290 Prediction 0.1828 T05H10.1 RAID03431492 cel-lsy-6-3p miRNA MIMAT0000749 T05H10.1 mRNA 174290 Prediction 0.1828 T05H10.1 RAID03662401 cel-miR-70-3p miRNA MIMAT0000042 T05H10.1 mRNA 174290 Prediction 0.1828 T05H10.1 RAID04056783 cel-miR-237-5p miRNA MIMAT0000292 T05H10.1 mRNA 174290 Prediction 0.1828