DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000316 cel-miR-261 176481 rabx-5 gcACUUUUGAUUUUUCGAu || || :||||||| ugUGCCAAAAGAAAAGCUu 2 18 114 132 [ce6:III:10612829-10612847:+] 0.5000 149 7 -11.38 -0.3787 MIMAT0000317 cel-miR-262 176481 rabx-5 uagucuuuugUAGCUCUUUg | ||||||| uggccgccugACCGAGAAAa 2 11 151 170 [ce6:III:10612866-10612885:+] 0.5000 142 7 -9.66 -0.6606 MIMAT0000324 cel-miR-268 176481 rabx-5 ugGUUUGACGAAGAUUAAGAACGg :|| :| || |||:|||| cuUAAUUUUGAACUUAUUUUUGCa 2 23 272 295 [ce6:III:10612987-10613010:+] 0.5000 138 0 -12.24 -0.1265 MIMAT0000695 cel-miR-353 176481 rabx-5 uuaugguuguguacCGUUAAc |||||| uugaacuuauuuuuGCAAUUu 2 8 279 299 [ce6:III:10612994-10613014:+] 0.5000 120 6 -4.60 -0.1700 MIMAT0011434 cel-miR-2209c 176481 rabx-5 acaucacauUGGCCACC-AGAAAa |: ||||| ||||| caauuuucuAUAGGUGGUUCUUUu 2 15 294 317 [ce6:III:10613009-10613032:+] 0.5000 122 0 -14.28 -0.9193 MIMAT0000006 cel-miR-35 176481 rabx-5 ugacgaucaaagguGGGCCACu ||||||| ccccccaaaaaauuCCCGGUGa 2 9 85 106 [ce6:III:10612800-10612821:+] 0.5000 140 7 -18.33 -1.1310 MIMAT0000007 cel-miR-36 176481 rabx-5 guacgcUUAAAAGUGGGCCACu || || ||||||| ccccaaAAAAUU--CCCGGUGa 2 17 87 106 [ce6:III:10612802-10612821:+] 0.5000 141 7 -17.63 -1.1095 MIMAT0000008 cel-miR-37 176481 rabx-5 ugacguucacaaguGGGCCACu ||||||| ccccccaaaaaauuCCCGGUGa 2 9 85 106 [ce6:III:10612800-10612821:+] 0.5000 140 7 -17.96 -1.1289 MIMAT0000009 cel-miR-38 176481 rabx-5 ugaggucaaaaaGAGGGCCACu :|||||||| ccccccaaaaaaUUCCCGGUGa 2 11 85 106 [ce6:III:10612800-10612821:+] 0.5000 146 7 -23.02 -1.1331 MIMAT0000010 cel-miR-39 176481 rabx-5 guucgacuaaaUGUGGGCCACu |: ||||||| ccccccaaaaaAUUCCCGGUGa 2 12 85 106 [ce6:III:10612800-10612821:+] 0.5000 143 7 -17.63 -1.1310 MIMAT0000011 cel-miR-40 176481 rabx-5 aaucgacuacaUGUGGGCCACu |: ||||||| ccccccaaaaaAUUCCCGGUGa 2 12 85 106 [ce6:III:10612800-10612821:+] 0.5000 143 7 -17.63 -1.1310 MIMAT0000012 cel-miR-41 176481 rabx-5 auccacuaaaaaguGGGCCACu ||||||| ccccccaaaaaauuCCCGGUGa 2 9 85 106 [ce6:III:10612800-10612821:+] 0.5000 140 7 -17.63 -1.1310 MIMAT0000013 cel-miR-42 176481 rabx-5 agacaucuacaauuGGGCCACu ||||||| ccccccaaaaaauuCCCGGUGa 2 9 85 106 [ce6:III:10612800-10612821:+] 0.5000 140 7 -17.63 -1.1289 MIMAT0000283 cel-miR-228 176481 rabx-5 ggCACUUAAGUACGUCACGGUaa ||| || ||: |||||| cgGUG-AUAACUGUUGUGCCAaa 3 22 101 122 [ce6:III:10612816-10612837:+] 0.5000 135 0 -16.35 -0.1138 MIMAT0000290 cel-miR-235 176481 rabx-5 aguccggccccucucACGUUAu |||||| uuuugaacuuauuuuUGCAAUu 2 8 277 298 [ce6:III:10612992-10613013:+] 0.5000 120 6 -4.62 -0.1884 MIMAT0000305 cel-miR-249 176481 rabx-5 ccGUUGCGAG-UUUUCAGGACACu :|: :|| :|| ||||||| cuUAGGUUUCUGAAUUUCCUGUGg 2 22 130 153 [ce6:III:10612845-10612868:+] 0.5000 148 7 -17.32 -0.4241 MIMAT0004219 cel-miR-784 176481 rabx-5 agaugcaugcgucUAACACGGu :||||||| cccggugauaacuGUUGUGCCa 2 10 99 120 [ce6:III:10612814-10612835:+] 0.5000 141 7 -18.09 -0.7490 MIMAT0004225 cel-miR-790 176481 rabx-5 gcGCCACAAGCGCU--CACGGUUc ||||| | | : ||||||| ccCGGUGAUAACUGUUGUGCCAAa 2 21 99 122 [ce6:III:10612814-10612837:+] 0.5000 151 7 -19.95 -1.2095 MIMAT0004226 cel-miR-791 176481 rabx-5 acggaAUAGACGCCUCACGGUUu || |||: ||||||| ggugaUAACUGU--UGUGCCAAa 2 19 102 122 [ce6:III:10612817-10612837:+] 0.5000 147 7 -16.52 -1.2064

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-228 99 122 -GG-CACUUAAGUACGUCACGGUAA || |||| ||: |||||| CCCGGUGAUAAC-UGUUGUGCCAA- rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-241 225 250 -AGUAAAGAG--CGUGGAUGGAGU- |||| |:||| ||| || UUCAUGCUUAUAGUACCAACCCCAC rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-243 97 121 CUAUAGGGCGGCGC----UAGCAUGGC ||||| :| :|:||:|| ---UUCCCGGUGAUAACUGUUGUGCCA rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-249 128 155 CCGU-UGCGAG--UUUUCAGGACACU- || | |:|: :|| |||||||: AGCUUAGGUUUCUGAAUUUCCUGUGGC rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-261 102 133 GCACUUUUGA------------UUUUUCGAU |||| |||| :||||||| GGUGAUAACUGUUGUGCCAAAAGAAAAGCUU rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-262 148 171 UAGUCUUUUGUA---GCUCUUUG | |: :| ||||||| CUGUGGCCGCCUGACCGAGAAAA rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-264 180 202 -GUAUUGUUGUUGGUGGGCG--G- |:|::||| :|| |||| | ACGUGGCAA--GCCCCCCGAAACG rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-271 87 108 UUACGAAAGGGU-------GGGCCGCU- |||| |||||:|| -------CCCCAAAAAAUUCCCGGUGAU rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-353 160 190 UUAUGGUU-------------GUGUACCGUUAAC |||:| |||:|||||| --GACCGAGAAAAAACUCGGCCACGUGGCAAG-- rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-37 98 108 UGACGUUCACAAGUGGGCCACU- |||||||| -------------UCCCGGUGAU rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-38 88 108 UGAGGUCAAAAAGAGGGCCACU- ||| :||||||||| --CCCAAAAAA-UUCCCGGUGAU rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-39 95 108 GUUCGACUAAAUGUGGGCCACU- |: |||||||| ----------AAUUCCCGGUGAU rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-40 95 108 AAUCGACUACAUGUGGGCCACU- |: |||||||| ----------AAUUCCCGGUGAU rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-42 98 108 AGACAUCUACAAUUGGGCCACU- |||||||| -------------UCCCGGUGAU rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-51 179 206 UUGUACCUAUCCUCGA-------UGCCCAU ||:||| ||| |||||| CACGUGGCA---AGCCCCCCGAAACGGGUU rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-53 175 206 -UC-GUGCCUUUGUUUACA------UGCCCAC :| |||| ::|||: |||||| CGGCCACGU-GGCAAGCCCCCCGAAACGGGUU rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-56 172 206 -GAGUCG-----CC-UUUGUAA-----UGCCCAU |||:|| || ||:| |||||| ACUCGGCCACGUGGCAAGCCCCCCGAAACGGGUU rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-78 116 142 -CGUGUUUG----UUGG-UCCGGAGGU || |||| |:|: |||::||: UGC-CAAAAGAAAAGCUUAGGUUUCUG rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-784 100 122 AGAUGCAUGCGUCUA------ACACGGU- || ||| ||||||| -------CCGGUGAUAACUGUUGUGCCAA rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-790 100 123 GCGCCACAA---GCGCUCACGGUUC ||||| :|: ||||||| -CCGGUGAUAACUGUU-GUGCCAAA rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-791 102 124 ACGGAAUAGACGCCUCACGGUUU- |: || |||: |||||||| GGUGAUAACUGUU--GUGCCAAAA rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-793 45 85 -AGAC--------------AGAUUGAUUCUA--UGGAGU- |||| |||:||| |||||| AUCUGUAAUUUUCCAAUUUUCUGACUUCCCAACACCUCAU rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-800 174 208 -GCCGU----CUGUUAAAG-------GCUCAAAC |||| |:||| ||:|||| UCGGCCACGUGGCAAGCCCCCCGAAACGGGUUUU rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-124 101 122 aCCGUAAGUGGC-GCACGGaau ||:: | ||:| :||||| cGGTGATAACTGTTGTGCCaaa rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-228 100 122 GG-CACUUAAGUACGUCACGGUaa || |||| | ||: |||||| CCGGTGATAAC-TGTTGTGCCAaa rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-241 226 248 AGUA--AAGAGCGUGGAUGGAGU |||| || | |:||| ||| || TCATGCTTATAGTACCAACCCCA rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-243 94 120 cuauAGGGCGGC----GCUAGCAUGGc ||||| :| | :|:||:|| aaatTCCCGGTGATAACTGTTGTGCCa rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-249 123 153 cCGUUGCGAGU--------UUUCAGGACACu | || |||:| || ||||||| aGAAAAGCTTAGGTTTCTGAATTTCCTGTGg rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-264 181 198 GUAUUGUUGUUGGUGGGCgg |:|::|| |:|| |||| CGTGGCA--AGCCCCCCGaa rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-271 80 106 uuacgaaaGGGU-------GGGCCGCU |||| |||||:|| ctcatcccCCCAAAAAATTCCCGGTGA rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-35 85 106 ugacgaucaaagguGGGCCACU |||||||| ccccccaaaaaattCCCGGTGA rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-353 169 191 UUAUG-GUU-GUGUACCGUUaac || || |:: |||:|||||| AAAACTCGGCCACGTGGCAAgcc rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-36 89 106 guacgcUUAAAAGUGGGCCACU |||| |||||||| ccaaaaAATT----CCCGGTGA rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-37 85 106 ugacguucacaaguGGGCCACU |||||||| ccccccaaaaaattCCCGGTGA rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-38 85 106 ugaggucaaaaagAGGGCCACU ||||||||| ccccccaaaaaatTCCCGGTGA rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-39 85 106 guucgacuaaaUGUGGGCCACU |: |||||||| ccccccaaaaaATTCCCGGTGA rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-40 85 106 aaucgacuacaUGUGGGCCACU |: |||||||| ccccccaaaaaATTCCCGGTGA rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-41 85 106 auccacuaaaaaguGGGCCACU |||||||| ccccccaaaaaattCCCGGTGA rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-42 85 106 agacaucuacaauuGGGCCACU |||||||| ccccccaaaaaattCCCGGTGA rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-53 179 205 ucGUGCCUUU------GUUUACAUGCCCAc |::|| || |:|| |||||| caCGTGGCAAGCCCCCCGAA---ACGGGTt rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-56 173 205 GAGUCG-----CCUUU------GUAAUGCCCAu |||:|| || || |: |||||| CTCGGCCACGTGGCAAGCCCCCCGAAACGGGTt rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-78 137 159 cguguUUGUUGG--UCCGGAGGu ||: || |||| || ttctgAATTTCCTGTGGCCGCCt rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-784 100 120 agaugcaugcGUCUAACACGGU | | |||||||| ccggtgataaCTG-TTGTGCCA rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-790 99 122 GCGCCACAAGCG-C-UCACGGUUc | ||||| | | | ||||||| CCCGGTGATAACTGTTGTGCCAAa rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-791 102 122 acggaAUAGACGCCUCACGGUUU || |||: |||||||| ggtgaTAACTGT--TGTGCCAAA rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-793 64 83 AGACAGAUUGAUUCUAUGGAGU |||| || | | | |||||| TCTGACTTCCCA--ACACCTCA rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-800 175 207 GCC-GU---CUGUUAAAG-------GCUCAAAc ||| || |:||| | ||:|||| CGGCCACGTGGCAAGCCCCCCGAAACGGGTTTt rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-249 146 153 CCGUUGCGAGUUUUC---------------------AGGACACU |: :|| |||||| |||||||: UGUUGUGC-CAAAAGAAAAGCUUAGGUUUCUGAAUUUCCUGUGGC rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-261 125 132 G------------CACUUUUGA------------UUUUUCGAU |||| |||| :||||||| CAAAAAAUUCCCGGUGAUAACUGUUGUGCCAAAAGAAAAGCUU rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-262 163 170 UAGUCUU-------------------------UUGUAGCUCUUUG :|| ||||||| AGCUUAGGUUUCUGAAUUUCCUGUGGCCGCCUGAC--CGAGAAAA rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-35 99 106 UGACGAUCAAAGGU------------------------GGGCCACU ||| |||| |||||||| UCUGAC---UUCCCAACACCUCAUCCCCCCAAAAAAUUCCCGGUGAU rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-36 99 106 GUACGCUUAAAAGU---------------------GGGCCACU |||||||| UCUGACUUCCCAACACCUCAUCCCCCCAAAAAAUUCCCGGUGAU rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-37 99 106 UGACGUUCACAAGU---------------------GGGCCACU |||||||| UCUGACUUCCCAACACCUCAUCCCCCCAAAAAAUUCCCGGUGAU rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-38 99 106 UGA----------------------GGUCAAAAAGAGGGCCACU ||| :||||||||| UCUGACUUCCCAACACCUCAUCCCCCCAAAAAA-UUCCCGGUGAU rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-39 99 106 GUUCGACU-AAAUGU-----------------------GGGCCACU |||| || || |||||||| U---CUGACUUCCCAACACCUCAUCCCCCCAAAAAAUUCCCGGUGAU rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-40 99 106 AAUCGACUACAUGU---------------------GGGCCACU |||||||| UCUGACUUCCCAACACCUCAUCCCCCCAAAAAAUUCCCGGUGAU rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-41 99 106 AUCCACUAAAAAGU---------------------GGGCCACU |||||||| UCUGACUUCCCAACACCUCAUCCCCCCAAAAAAUUCCCGGUGAU rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-42 99 106 AGACAUCUACAAUU---------------------GGGCCACU |||||||| UCUGACUUCCCAACACCUCAUCCCCCCAAAAAAUUCCCGGUGAU rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-784 113 120 AGAUG--------------------CAUGCGUC-UAACACGGU ||: :|||||||| ACCUCAUCCCCCCAAAAAAUUCCCGGUGAUAACUGUUGUGCCAA rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-790 115 122 GC-------------------GCCACAA---GCGCUCACGGUUC ||||| :|: ||||||| CUCAUCCCCCCAAAAAAUUCCCGGUGAUAACUGUU-GUGCCAAA rabx-5; CELE_Y39A1A.5; Y39A1A.5 cel-miR-791 115 122 A----------------------CGGAAUAGACGCCUCACGGUUU |: || |||: |||||||| CUCAUCCCCCCAAAAAAUUCCCGGUGAUAACUGUU--GUGCCAAAA

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score rabx-5 RAID00515332 cel-miR-36-3p miRNA MIMAT0000007 rabx-5 mRNA 176481 Prediction 0.1828 rabx-5 RAID00781742 cel-miR-791-3p miRNA MIMAT0004226 rabx-5 mRNA 176481 Prediction 0.1828 rabx-5 RAID00929575 cel-miR-38-3p miRNA MIMAT0000009 rabx-5 mRNA 176481 Prediction 0.1828 rabx-5 RAID01522847 cel-miR-235-3p miRNA MIMAT0000290 rabx-5 mRNA 176481 Prediction 0.1828 rabx-5 RAID01809401 cel-miR-41-3p miRNA MIMAT0000012 rabx-5 mRNA 176481 Prediction 0.1828 rabx-5 RAID02345070 cel-miR-35-3p miRNA MIMAT0000006 rabx-5 mRNA 176481 Prediction 0.1828 rabx-5 RAID02362742 cel-miR-39-3p miRNA MIMAT0000010 rabx-5 mRNA 176481 Prediction 0.1828 rabx-5 RAID02707440 cel-miR-790-5p miRNA MIMAT0004225 rabx-5 mRNA 176481 Prediction 0.1828 rabx-5 RAID02753075 cel-miR-37-3p miRNA MIMAT0000008 rabx-5 mRNA 176481 Prediction 0.1828 rabx-5 RAID02828987 cel-miR-249-3p miRNA MIMAT0000305 rabx-5 mRNA 176481 Prediction 0.1828 rabx-5 RAID03269249 cel-miR-784-5p miRNA MIMAT0004219 rabx-5 mRNA 176481 Prediction 0.1828 rabx-5 RAID03633282 cel-miR-40-3p miRNA MIMAT0000011 rabx-5 mRNA 176481 Prediction 0.1828 rabx-5 RAID04000061 cel-miR-228-5p miRNA MIMAT0000283 rabx-5 mRNA 176481 Prediction 0.1828 rabx-5 RAID04034136 cel-miR-42-3p miRNA MIMAT0000013 rabx-5 mRNA 176481 Prediction 0.1828