DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000027 cel-miR-56* 174250 tag-308 auguuggguuuuaccuAGGCGGu |||||| aaugugaugauucguuUCCGCCg 2 8 53 75 [ce6:II:7752410-7752432:+] 0.5442 120 6 -16.88 -0.1261 MIMAT0015102 cel-miR-60* 174250 tag-308 uaaaauaccgugagaAGGUCAa |||||| uuuucuauguucaaaUCCAGUa 2 8 33 54 [ce6:II:7731015-7731036:+] 0.6408 120 6 -9.76 -0.1377 MIMAT0015110 cel-miR-84* 174250 tag-308 cgGCUCA-AUCAACUU---UGUAACAc :|||| || |:: ||||||| aaUGAGUAGAGAGGGGCUCACAUUGUc 2 22 58 84 [ce6:II:7731040-7731066:+] 0.6408 143 7 -16.46 -0.5396 MIMAT0015112 cel-miR-229* 174250 tag-308 gauACUGUGGGCU-AUGGAAAGa | :::||:|: |:|||||| cuuUCGUGCCUGGUUGCCUUUCu 2 20 159 181 [ce6:II:7731141-7731163:+] 0.6408 142 6 -20.22 -0.1054 MIMAT0015115 cel-miR-239b* 174250 tag-308 aaaaacGUGUGG-UGUUUUCAcg :| ||: | |||||| cuaaaaUAGACUAAAAAAAGUuu 3 17 225 247 [ce6:II:7731207-7731229:+] 0.6408 127 0 -7.10 -0.2124 MIMAT0015119 cel-miR-247* 174250 tag-308 ccaUUAAUCUUUGAAA-AGAGAu ||| | || :||| ||||| aaaAAUCAUAAUUUUUGUCUCUg 2 20 104 126 [ce6:II:7731086-7731108:+] 0.6408 131 0 -8.48 -1.2825 MIMAT0015119 cel-miR-247* 174250 tag-308 ccauuaaucuuUGAAAAGAGAu ||| |||||| auguccacaguACUGUUCUCUg 2 12 8 29 [ce6:II:7730990-7731011:+] 0.6408 123 6 -11.61 -0.2174 MIMAT0000313 cel-miR-258 174250 tag-308 uuuuccuAAGGAGAGUUUUgg ||: |:|||||| acguuuuUUUAUUUCAAAAau 3 15 190 210 [ce6:II:7752547-7752567:+] 0.5442 134 0 -5.65 -0.1851 MIMAT0015240 cel-miR-788* 174250 tag-308 gcuaAGAUUAGGUAAAGg |:|:| ||||||| uacaUUUGA-CCAUUUCu 2 15 81 97 [ce6:II:7752438-7752454:+] 0.5442 148 7 -11.57 -1.0781 MIMAT0004229 cel-miR-794 174250 tag-308 ucacUGUUGCUACUAAUGGAgu || || || |||||| uucuACUAC-CUG-UUACCUag 3 19 10 29 [ce6:II:7752367-7752386:+] 0.5442 126 0 -7.30 -0.2824 MIMAT0004235 cel-miR-800 174250 tag-308 gccgucUGUUAAAGGCUCAAAc |||||||::|||||| uuauucACAAUUUUUGAGUUUc 2 17 270 291 [ce6:II:7731252-7731273:+] 0.6408 160 6 -16.60 -0.3428 MIMAT0005033 cel-miR-1020 174250 tag-308 gacuuucacaguguCUUAUUa |||||| uauauaauuauuauGAAUAAa 2 8 263 283 [ce6:II:7752620-7752640:+] 0.6256 120 6 -4.28 -0.8244 MIMAT0006587 cel-miR-1820 174250 tag-308 cuuguagUAGCUU--UUUG-UUAGUUUu ||:||| | | ||||||| auguggaAUUGAACUCAUCAAAUCAAAc 2 19 224 251 [ce6:II:7752581-7752608:+] 0.5849 148 7 -12.20 -1.0073 MIMAT0006587 cel-miR-1820 174250 tag-308 cuUGUAGUAGCUUUUUGUUAGUUUu |:|| ||: | | ||| ||| auAUAUAAUU-AUUAUGAAUAAAAa 2 24 262 285 [ce6:II:7752619-7752642:+] 0.6256 121 0 -3.63 -0.1013 MIMAT0006587 cel-miR-1820 174250 tag-308 cuUGUAGUAGCUUUUUGUUAGUUUu | :|::|: ||| |||:||| caAAGUUGUUUCUAAA-AAUUAAAa 2 24 84 107 [ce6:II:7731066-7731089:+] 0.6408 137 0 -6.19 -0.1269 MIMAT0006590 cel-miR-1823 174250 tag-308 aauGAGGAUUU--GUGAAGGUCAu :|:||| : || |||||| uuuUUUCUAUGUUCAAAUCCAGUa 2 20 31 54 [ce6:II:7731013-7731036:+] 0.6408 122 6 -16.65 -0.1364 MIMAT0006771 cel-miR-1829c 174250 tag-308 auguugguagaacuuAAAGCGaa |||||| cuucccccccaauucUUUCGCga 3 9 159 181 [ce6:II:7752516-7752538:+] 0.5442 120 0 -7.82 -0.1528 MIMAT0011425 cel-miR-2207 174250 tag-308 gaauaugugucagagUUAAGUgu |||||| uuuuuuuauuucaaaAAUUCAaa 3 9 193 215 [ce6:II:7752550-7752572:+] 0.5442 120 0 -5.64 -0.3654 MIMAT0011425 cel-miR-2207 174250 tag-308 gaauAU-GUGUCAGAGUUAAGUGu || |||| |||: |||||| uucuUACCACAAUCUUUAUUCACa 2 20 255 278 [ce6:II:7731237-7731260:+] 0.6408 142 6 -19.90 -0.5612 MIMAT0011438 cel-miR-2211 174250 tag-308 aaAGAGGAGAUUUAAGAUGGACu |||:: || | ||||||| ccUCUUUACU-UCUACUACCUGu 2 22 1 22 [ce6:II:7752358-7752379:+] 0.5442 151 7 -18.07 -1.2862 MIMAT0011441 cel-miR-2213* 174250 tag-308 agUUUGACACUUCU-----CAGGCGGu ||| ||||| || |||||| ucAAAAUGUGAUGAUUCGUUUCCGCCg 2 21 49 75 [ce6:II:7752406-7752432:+] 0.5442 127 6 -22.32 -0.1236 MIMAT0011444 cel-miR-2214 174250 tag-308 uugcggccaguucaacAACAGUUac ||||||| uagagaggggcucacaUUGUCAAag 3 10 64 88 [ce6:II:7731046-7731070:+] 0.6408 125 0 -10.48 -0.1540 MIMAT0011447 cel-miR-2216 174250 tag-308 cggauggcuGAAUUUUACACg :| |||||||| uguuuuuuuUUCAAAAUGUGa 2 13 39 59 [ce6:II:7752396-7752416:+] 0.5442 148 7 -9.43 -1.1791 MIMAT0011450 cel-miR-1832b 174250 tag-308 uagucgCUUAGCGAGACGGGUGa | ||| | ||:|||| ------GUAUC-CAAUGUCCACa 2 18 1 16 [ce6:II:7730983-7730998:+] 0.6408 131 0 -13.54 -0.1858 MIMAT0011458 cel-miR-2218b* 174250 tag-308 agAGUGAUGUUUGAUGUUUAAa |:|:||::|| || ||||| aaUUAUUAUGAA-UAAAAAUU- 2 21 268 287 [ce6:II:7752625-7752644:+] 0.6256 138 0 -5.85 -0.1422 MIMAT0011458 cel-miR-2218b* 174250 tag-308 agAGUGAUG-UUUGAUGUUUAAa |:|:| | ||| | |||||| uuUUAUUUCAAAAAUUCAAAUUu 2 21 196 218 [ce6:II:7752553-7752575:+] 0.5442 135 6 -11.24 -0.1923 MIMAT0011462 cel-miR-2220 174250 tag-308 gacauucAGGUGUUUGUUAAcu |::|: |||||| cacaaucUUUAUUCACAAUUuu 3 16 262 283 [ce6:II:7731244-7731265:+] 0.6408 127 0 -5.42 -0.1268 MIMAT0000001 cel-let-7 174250 tag-308 uuGAUAUGUUGGAUGAUGGAgu || ||| :||||||||| cuCUUUAC-UUCUACUACCUgu 3 21 2 22 [ce6:II:7752359-7752379:+] 0.5442 146 0 -19.04 -0.2316 MIMAT0000014 cel-miR-43 174250 tag-308 cgcugucguucaUUUGACACUAu ||| |||||| uguuuuuuuuucAAAAUGUGAUg 2 12 39 61 [ce6:II:7752396-7752418:+] 0.5442 123 6 -7.99 -0.1009 MIMAT0000019 cel-miR-48 174250 tag-308 agcguAGAUGACUCGGAUGGAgu |:|||| |||||| -ccucUUUACUUCUACUACCUgu 3 19 1 22 [ce6:II:7752358-7752379:+] 0.5442 134 0 -13.55 -0.2274 MIMAT0000032 cel-miR-60 174250 tag-308 acUUGAUCUUUUACACGUAUUAu ||:|| |||| |||||| aaAAUUA-AAAA---UCAUAAUu 2 22 98 116 [ce6:II:7731080-7731098:+] 0.6408 123 6 -6.09 -0.3351 MIMAT0000043 cel-miR-71 174250 tag-308 agugauggguacAGAAAGu |||||| aauuuuugaguuUCUUUCu 2 8 278 296 [ce6:II:7731260-7731278:+] 0.6408 120 6 -5.47 -0.1767 MIMAT0000057 cel-miR-84 174250 tag-308 auguuAUAAUGUAUGAUGGAgu || | | |||||||| cucuuUACUUC-UACUACCUgu 3 18 2 22 [ce6:II:7752359-7752379:+] 0.5442 135 0 -11.68 -0.2316 MIMAT0000287 cel-miR-232 174250 tag-308 aguggcGUCAAUUCUACGUAAAu || | | | |||||| acucauCAAAUCAAACGCAUUUu 2 18 236 258 [ce6:II:7752593-7752615:+] 0.5849 121 6 -7.30 -0.3720 MIMAT0000297 cel-miR-241 174250 tag-308 aguAAAGAGCGUGGAUGGAgu || ||: :| |||||| ucuUUACUUCUA-CUACCUgu 3 19 3 22 [ce6:II:7752360-7752379:+] 0.5442 132 0 -10.23 -0.2178 MIMAT0004215 cel-miR-253 174250 tag-308 ggaaGGGUGUUGCGGAUGAUu |:| : || :|||||| ---cCUCUUUACUUCUACUAc 2 18 1 18 [ce6:II:7752358-7752375:+] 0.5442 137 6 -14.53 -0.2420 MIMAT0000699 cel-miR-357 174250 tag-308 ugAGGACGUUGCUGACCGUAAAu || | ||: | |||||| acUCAUCAAAUCAAACGCAUUUu 2 22 236 258 [ce6:II:7752593-7752615:+] 0.5849 121 6 -10.06 -0.3690 MIMAT0000749 cel-lsy-6 174250 tag-308 gcuuuacgcAGAGUAU-GUUUu |||:||| |||| uugaccauuUCUUAUAGCAAAa 2 13 86 107 [ce6:II:7752443-7752464:+] 0.5442 120 0 -9.64 -1.2816 MIMAT0004225 cel-miR-790 174250 tag-308 gcgcCACAAGCGCUCACGGUUc || | :|: ||| |||| uuuuGUCUCUGUAAGUCCCAAa 2 19 116 137 [ce6:II:7731098-7731119:+] 0.6408 126 0 -10.71 -0.1462 MIMAT0004226 cel-miR-791 174250 tag-308 acGGAAUAGACGC-CUCACGGUUu ::||:||| :| ||| |||| auUUUUGUCUCUGUAAGUCCCAAa 2 22 114 137 [ce6:II:7731096-7731119:+] 0.6408 132 0 -16.25 -0.1406 MIMAT0004227 cel-miR-792 174250 tag-308 agacuuuCAACUUCUCUAAAGUu ||| ||||||:| acuaccuGUUACCUAGAUUUUAu 2 17 14 36 [ce6:II:7752371-7752393:+] 0.5442 132 0 -7.68 -0.1434 MIMAT0004227 cel-miR-792 174250 tag-308 agacuuucaacuucucUAAAGUu |||||| cauuucuuauagcaaaAUUUCAu 2 8 91 113 [ce6:II:7752448-7752470:+] 0.5442 120 6 -3.13 -0.1931 MIMAT0004227 cel-miR-792 174250 tag-308 agacuuucaacuucucUAAAGUu |||||| uuucauacguuuuuuuAUUUCAa 2 8 184 206 [ce6:II:7752541-7752563:+] 0.5442 120 6 -4.46 -0.5192 MIMAT0004227 cel-miR-792 174250 tag-308 agacuuucaacuucucUAAAGUu |||||| uauuucaaaaauucaaAUUUCAu 2 8 199 221 [ce6:II:7752556-7752578:+] 0.5442 120 6 -3.61 -0.1663 MIMAT0004230 cel-miR-795 174250 tag-308 uucGAGCGACUAGUUAGAUGGAgu ||| :| |: |||||| --cCUCUUUACUUCUACUACCUgu 3 22 1 22 [ce6:II:7752358-7752379:+] 0.5442 129 0 -11.01 -0.2337

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 cpna-2; B0228.4 cel-let-7 7 29 UUGAU-AUGUUGGAUGAUGGAGU ||| ||| ||||::||||| UACUUCUACUACCUGUUACCUA- cpna-2; B0228.4 cel-miR-265 154 171 UAUGGUGGGAAGGAGGGAGU- ||||||||| ||| || ---ACACCCUUCC-CCCCCAA cpna-2; B0228.4 cel-miR-56* 33 77 -AUGUUG---------GGUUUUAC-CU---------AGGCGGU ||:||: :||||||| || ||||||: UUAUAAUGUUUUUUUUUCAAAAUGUGAUGAUUCGUUUCCGCCGU cpna-2; B0228.4 cel-let-7 2 22 uuGAUAUGUUGGAUGAUGGAgu || ||| :||||||||| ctCTTTAC-TTCTACTACCTgt cpna-2; B0228.4 cel-miR-265 151 169 uaUGGUGGGAAGGAGGGAGU | ||||||| | ||| || ccAACACCCTT-CCCCCCCA cpna-2; B0228.4 cel-miR-56* 53 75 auguuggguuuuaccuAGGCGGu |||||| aatgtgatgattcgttTCCGCCg

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score cpna-2 RAID00245819 cel-miR-241-5p miRNA MIMAT0000297 cpna-2 mRNA 174250 Prediction 0.1828 cpna-2 RAID00346319 cel-miR-790-5p miRNA MIMAT0004225 cpna-2 mRNA 174250 Prediction 0.1828 cpna-2 RAID00642952 cel-miR-792-3p miRNA MIMAT0004227 cpna-2 mRNA 174250 Prediction 0.1828 cpna-2 RAID00710353 cel-miR-84-5p miRNA MIMAT0000057 cpna-2 mRNA 174250 Prediction 0.1828 cpna-2 RAID00851397 cel-miR-357-3p miRNA MIMAT0000699 cpna-2 mRNA 174250 Prediction 0.1828 cpna-2 RAID00976183 cel-miR-253-3p miRNA MIMAT0004215 cpna-2 mRNA 174250 Prediction 0.1828 cpna-2 RAID01114328 cel-miR-71-5p miRNA MIMAT0000043 cpna-2 mRNA 174250 Prediction 0.1828 cpna-2 RAID01344567 cel-miR-232-3p miRNA MIMAT0000287 cpna-2 mRNA 174250 Prediction 0.1828 cpna-2 RAID02010151 cel-let-7-5p miRNA MIMAT0000001 cpna-2 mRNA 174250 Prediction 0.1828 cpna-2 RAID02462913 cel-miR-791-3p miRNA MIMAT0004226 cpna-2 mRNA 174250 Prediction 0.1828 cpna-2 RAID02568954 cel-miR-60-3p miRNA MIMAT0000032 cpna-2 mRNA 174250 Prediction 0.1828 cpna-2 RAID02628135 cel-miR-795-5p miRNA MIMAT0004230 cpna-2 mRNA 174250 Prediction 0.1828 cpna-2 RAID03039547 cel-miR-48-5p miRNA MIMAT0000019 cpna-2 mRNA 174250 Prediction 0.1828 cpna-2 RAID03302518 cel-lsy-6-3p miRNA MIMAT0000749 cpna-2 mRNA 174250 Prediction 0.1828 cpna-2 RAID03928307 cel-miR-43-3p miRNA MIMAT0000014 cpna-2 mRNA 174250 Prediction 0.1828