DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015102 cel-miR-60* 174210 bath-44 uaaAAUACCGUGAGAAGGUCAa |||| |||| ||||||| acaUUAUUACACU-UUCCAGUu 2 20 486 506 [ce6:II:7397232-7397252:+] 0.4679 165 7 -17.04 -1.0244 MIMAT0004233 cel-miR-798 174210 bath-44 agucaguuauacauUCCGAAu |||||| uuacauucauaauuAGGCUUc 2 8 83 103 [ce6:II:7396829-7396849:+] 0.5405 120 6 -10.50 -0.1785 MIMAT0005523 cel-miR-1022 174210 bath-44 cuACCGCAGGA---UUGUUAC-UAGAa | || ||:| ||: ||| |||| guUUGCAUCUUAGAAAUCAUGAAUCUc 2 22 133 159 [ce6:II:7396879-7396905:+] 0.5405 120 0 -10.12 -0.4546 MIMAT0006590 cel-miR-1823 174210 bath-44 aaUGAGGAUUUGUGAAGGUCAu |:| :|| || :||||||| acAUUAUUACAC-UUUCCAGUu 2 21 486 506 [ce6:II:7397232-7397252:+] 0.4679 158 7 -15.91 -1.0483 MIMAT0006772 cel-miR-1830 174210 bath-44 cggaucuuuugcacuUUGGAGc |||||| caugucauguuuuuuAACCUCu 2 8 47 68 [ce6:II:7396793-7396814:+] 0.5405 120 6 -8.23 -0.1084 MIMAT0011431 cel-miR-2209a* 174210 bath-44 cuuccucUUCUCACCAAUGUGAg || | | ||||||| uucacucAACA-UUAUUACACUu 2 17 478 499 [ce6:II:7397224-7397245:+] 0.4679 142 7 -7.77 -1.0563 MIMAT0011433 cel-miR-2209c* 174210 bath-44 uuuguucugcacgccAAUGUGAg ||||||| auucacucaacauuaUUACACUu 2 9 477 499 [ce6:II:7397223-7397245:+] 0.4679 140 7 -7.77 -1.0563 MIMAT0011439 cel-miR-2212 174210 bath-44 guuucagucggauacuAGACGGu |||||| gaccucuuuuucauuuUCUGCCc 2 8 213 235 [ce6:II:7396959-7396981:+] 0.5405 120 6 -11.00 -0.1038 MIMAT0011447 cel-miR-2216 174210 bath-44 cggauggcugaAUUUUACACg |:||||||| guuucauuuuaUGAAAUGUGa 2 11 504 524 [ce6:II:7397250-7397270:+] 0.4679 146 7 -10.18 -0.8914 MIMAT0011457 cel-miR-2218b 174210 bath-44 cuuuuacuacaUCAAACA-UCAGa ||||||| |||| cccccauccucAGUUUGUGAGUCa 2 13 180 203 [ce6:II:7396926-7396949:+] 0.5405 124 0 -11.63 -0.6389 MIMAT0011461 cel-miR-2220* 174210 bath-44 cuauuuaucaaauacCAGAAUg |||||| uaccacaaaacuaguGUCUUAa 2 8 395 416 [ce6:II:7397141-7397162:+] 0.4679 120 6 -6.95 -0.1203 MIMAT0014446 cel-miR-2953-5p 174210 bath-44 uaaAAGUGCU--UGUGAAGACAu ||||: | | :||||||| acaUUCAUAAUUAGGCUUCUGUg 2 19 85 107 [ce6:II:7396831-7396853:+] 0.5405 153 7 -15.35 -0.9471 MIMAT0000003 cel-miR-1 174210 bath-44 auguaugaagaAAUGUAAGgu |||||||| uauuuucaaacUUACAUUCau 3 11 72 92 [ce6:II:7396818-7396838:+] 0.5405 130 0 -9.23 -0.1698 MIMAT0000035 cel-miR-63 174210 bath-44 aaagguugagcgaagucACAGUAu |||||| aaaugugaaauaaaauaUGUCAUu 2 8 517 540 [ce6:II:7397263-7397286:+] 0.4679 120 6 -6.24 -0.1325 MIMAT0000036 cel-miR-64 174210 bath-44 aagccauugcgaagucACAGUAu |||||| aaugugaaauaaaauaUGUCAUu 2 8 518 540 [ce6:II:7397264-7397286:+] 0.4679 120 6 -7.50 -0.1312 MIMAT0000037 cel-miR-65 174210 bath-44 aagccaaugcgaagucACAGUAu |||||| aaugugaaauaaaauaUGUCAUu 2 8 518 540 [ce6:II:7397264-7397286:+] 0.4679 120 6 -7.43 -0.1299 MIMAT0000038 cel-miR-66 174210 bath-44 aguguagggauuagucACAGUAc |||||| aaugugaaauaaaauaUGUCAUu 2 8 518 540 [ce6:II:7397264-7397286:+] 0.4679 120 6 -5.34 -0.1287 MIMAT0000039 cel-miR-67 174210 bath-44 agAUGAGAAAGAUCCU-CCAA--CACu ||:| || |||||| |||| ||| caUAUUGUUGCUAGGACGGUUUCGUGc 2 23 267 293 [ce6:II:7397013-7397039:+] 0.4679 129 0 -19.78 -0.2825 MIMAT0000049 cel-miR-77 174210 bath-44 accugucGAUACCGGACUACUu | || | ||||||| aaagcccCCAUUGACUGAUGAg 2 16 329 350 [ce6:II:7397075-7397096:+] 0.4679 151 7 -12.75 -0.2323 MIMAT0000053 cel-miR-80 174210 bath-44 agccGAAAGUUGAUUAC-UAGAGu ||| || | ||| ||||| gcauCUUAGAAAUCAUGAAUCUCa 2 20 137 160 [ce6:II:7396883-7396906:+] 0.5405 127 0 -10.93 -0.5256 MIMAT0000284 cel-miR-229 174210 bath-44 gcUACCUUUUCUAUUGGUCACAGUAa ||| :||| | ||: |||||| aaAUGUGAAAUAAAAU--AUGUCAUu 2 25 517 540 [ce6:II:7397263-7397286:+] 0.4679 133 6 -11.13 -0.1157 MIMAT0000290 cel-miR-235 174210 bath-44 agUCCGGCCCCUCUCACGUUAu ||| | || ||||||| cuAGGAC-GGUUUCGUGCAAUu 2 21 277 297 [ce6:II:7397023-7397043:+] 0.4679 146 7 -18.81 -0.1999 MIMAT0004231 cel-miR-796 174210 bath-44 aauGAUUGGAGUU--GAUGUAAGgu :|| ::|||| :||||||| uccUUAUUUUCAAACUUACAUUCau 3 21 68 92 [ce6:II:7396814-7396838:+] 0.5405 143 0 -14.04 -0.1715

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score bath-44 RAID00066436 cel-miR-796 miRNA MIMAT0004231 bath-44 mRNA 174210 Prediction 0.1828 bath-44 RAID00312745 cel-miR-64-5p miRNA MIMAT0000036 bath-44 mRNA 174210 Prediction 0.1828 bath-44 RAID00581571 cel-miR-63-3p miRNA MIMAT0000035 bath-44 mRNA 174210 CLIP-seq//Prediction 0.6308 bath-44 RAID00603729 cel-miR-65-5p miRNA MIMAT0000037 bath-44 mRNA 174210 Prediction 0.1828 bath-44 RAID00875430 cel-miR-66-5p miRNA MIMAT0000038 bath-44 mRNA 174210 Prediction 0.1828 bath-44 RAID01004407 cel-miR-1-3p miRNA MIMAT0000003 bath-44 mRNA 174210 Prediction 0.1828 bath-44 RAID01686477 cel-miR-67-3p miRNA MIMAT0000039 bath-44 mRNA 174210 Prediction 0.1828 bath-44 RAID02151270 cel-miR-77-3p miRNA MIMAT0000049 bath-44 mRNA 174210 Prediction 0.1828 bath-44 RAID03146460 cel-miR-80-3p miRNA MIMAT0000053 bath-44 mRNA 174210 Prediction 0.1828 bath-44 RAID03513802 cel-miR-235-3p miRNA MIMAT0000290 bath-44 mRNA 174210 Prediction 0.2202 bath-44 RAID03605355 cel-miR-229-5p miRNA MIMAT0000284 bath-44 mRNA 174210 CLIP-seq//Prediction 0.6308