DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT034616 cel-miR-79-3p Caenorhabditis elegans fust-1 174175 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT033197 cel-miR-792-3p Caenorhabditis elegans fust-1 174175 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015112 cel-miR-229* 174175 C27H5.3 gauACUGUGGGCUAUGGAAAga | |:|:|| |||||| auuUUAUAUCC---ACCUUUau 3 20 79 97 [ce6:II:7155302-7155320:+] 0.6327 127 0 -11.35 -0.1530 MIMAT0015114 cel-miR-238* 174175 C27H5.3 cgaaacuugcaggcucUUGUAGGu ||||||: ucuccccauaaauuuuAACAUCUa 2 9 13 36 [ce6:II:7155236-7155259:+] 0.6327 124 0 -8.47 -0.7568 MIMAT0015119 cel-miR-247* 174175 C27H5.3 ccauuaaucuuugaaAAGAGAu |||||| aacaucuaauuuaaaUUCUCUg 2 8 29 50 [ce6:II:7155252-7155273:+] 0.6327 120 6 -8.08 -0.2729 MIMAT0000324 cel-miR-268 174175 C27H5.3 ugguuugacgaagaUUAAGAACGg ||||:|||| uuaacgaaaauaaaAAUUUUUGCa 2 11 164 187 [ce6:II:7155387-7155410:+] 0.6327 134 0 -10.46 -0.1209 MIMAT0015239 cel-miR-786* 174175 C27H5.3 cauuUAUGGGGUUGACUAUAAGc |||:|| :| |||||| uuuuAUAUCCACCUUUAUAUUCu 2 20 80 102 [ce6:II:7155303-7155325:+] 0.6327 131 6 -10.93 -0.1656 MIMAT0005522 cel-miR-1021 174175 C27H5.3 ggcuccUAAAGUGUACUAGAGUGAa ||||||: | || |||| uuuuauAUUUCAUUUUUUCCCACUu 2 20 132 156 [ce6:II:7155355-7155379:+] 0.6327 135 0 -12.21 -0.2552 MIMAT0005523 cel-miR-1022 174175 C27H5.3 cuaccGCAGGAUU---GUUACUAGAa | |:| || ||||| ||| cgauaCAUUCAAAUUUCAAUGUUCUu 2 19 107 132 [ce6:II:7155330-7155355:+] 0.6327 121 0 -9.03 -0.1265 MIMAT0005523 cel-miR-1022 174175 C27H5.3 cuaccgcaggauuguuACUAGAa |||||| ucuaauuuaaauucucUGAUCUc 2 8 33 55 [ce6:II:7155256-7155278:+] 0.6327 120 6 -7.32 -0.2315 MIMAT0006587 cel-miR-1820 174175 C27H5.3 cuuGUAGUAGCUUUUUGUUAGUUUu :||: |: || :| ||| ||| uuuUAUU-UUUAACGAAAAUAAAAa 2 23 156 179 [ce6:II:7155379-7155402:+] 0.6327 124 0 -6.84 -0.1090 MIMAT0006776 cel-miR-1834 174175 C27H5.3 aaccUAGAGUUACCA-ACUAGAGa ||:| ||| | ||||||| ucuaAUUUAAAUUCUCUGAUCUCu 2 20 33 56 [ce6:II:7155256-7155279:+] 0.6327 158 7 -12.65 -1.0476 MIMAT0011432 cel-miR-2209a 174175 C27H5.3 acAUCACAUU--GGCGACUAGAGa || | ||| :| |||||||| ucUAAUUUAAAUUCUCUGAUCUCu 2 21 33 56 [ce6:II:7155256-7155279:+] 0.6327 159 7 -15.27 -1.0529 MIMAT0011447 cel-miR-2216 174175 C27H5.3 cggauggcugaauuUUACACg |||||| ucucugaucucuucAAUGUGa 2 8 45 65 [ce6:II:7155268-7155288:+] 0.6327 120 6 -12.95 -0.2711 MIMAT0011451 cel-miR-2217* 174175 C27H5.3 cuagcuguggcuGACGGGUGAGAc :| ||||||:| uauauuucauuuUUUCCCACUUUu 2 13 135 158 [ce6:II:7155358-7155381:+] 0.6327 132 0 -16.06 -0.1990 MIMAT0011454 cel-miR-2209b 174175 C27H5.3 acuuCGUGUUGGCGAGUAGAGa || || | |||:|||| ----GC-CAUCAACUCGUCUCc 2 19 1 17 [ce6:II:7155224-7155240:+] 0.6327 136 0 -15.45 -0.2250 MIMAT0011458 cel-miR-2218b* 174175 C27H5.3 agaGUGAUGUU-UG-AUGUUUAAa :||| |:| || | |||||| uucUACUUCGAUACAUUCAAAUUu 2 20 99 122 [ce6:II:7155322-7155345:+] 0.6327 129 6 -10.61 -0.2122 MIMAT0011462 cel-miR-2220 174175 C27H5.3 gaCAUUCAGGUGUUUGUUAAcu | :|| |: ||||||| guGAGAGACUUGUAACAAUUuu 3 21 62 83 [ce6:II:7155285-7155306:+] 0.6327 132 0 -8.33 -0.1410 MIMAT0000003 cel-miR-1 174175 C27H5.3 auguAUGAAGAAAUGUAAGgu |||||| ||||||| auucUACUUCGAUACAUUCaa 3 18 98 118 [ce6:II:7155321-7155341:+] 0.6327 149 0 -16.04 -0.5002 MIMAT0000030 cel-miR-58 174175 C27H5.3 uaacggcaUGACUUGCUAGAGu |:| :|||||| uaauuuaaAUUCUCUGAUCUCu 2 15 35 56 [ce6:II:7155258-7155279:+] 0.6327 126 6 -9.18 -0.1059 MIMAT0000053 cel-miR-80 174175 C27H5.3 agccgAAAGUUGA-UUACUAGAGu ||| ||:| ||||||| ucuaaUUUAAAUUCUCUGAUCUCu 2 19 33 56 [ce6:II:7155256-7155279:+] 0.6327 153 7 -9.96 -1.0476 MIMAT0000054 cel-miR-81 174175 C27H5.3 ugaucgaAAGUGCUACUAGAGu ||| | ||||||| auuuaaaUUCUC--UGAUCUCu 2 16 37 56 [ce6:II:7155260-7155279:+] 0.6327 144 7 -9.77 -1.0292 MIMAT0000055 cel-miR-82 174175 C27H5.3 ugaccgaAAGUGCUACUAGAGu ||| | ||||||| auuuaaaUUCUC--UGAUCUCu 2 16 37 56 [ce6:II:7155260-7155279:+] 0.6327 144 7 -9.77 -1.0292 MIMAT0000060 cel-miR-87 174175 C27H5.3 cguguggacUUUGAAACGAGUg || :||||| || gaaaauaaaAAUUUUUGCACAu 2 14 169 190 [ce6:II:7155392-7155413:+] 0.6327 121 0 -6.65 -0.1527 MIMAT0000307 cel-miR-251 174175 C27H5.3 uuauucucgccgugguGAUGAAuu |||||| uauccaccuuuauauuCUACUUcg 3 9 85 108 [ce6:II:7155308-7155331:+] 0.6327 120 0 -9.42 -0.4395 MIMAT0000308 cel-miR-252 174175 C27H5.3 aaUGGACGCCGUGAUGAUGAAua |||| : :|:| |||||| ccACCU-UUAUAUU-CUACUUcg 3 22 88 108 [ce6:II:7155311-7155331:+] 0.6327 129 0 -11.51 -0.4147 MIMAT0004227 cel-miR-792 174175 C27H5.3 agacuuucaacuucucUAAAGUu |||||| acuucgauacauucaaAUUUCAa 2 8 103 125 [ce6:II:7155326-7155348:+] 0.6327 120 6 -4.72 -0.3636 MIMAT0004227 cel-miR-792 174175 C27H5.3 agacuuucaacuucucUAAAGUu |||||| ucaauguucuuuuuauAUUUCAu 2 8 122 144 [ce6:II:7155345-7155367:+] 0.6327 120 6 -3.31 -0.4655 MIMAT0004231 cel-miR-796 174175 C27H5.3 aauGAUUGGAGUUGAUGUAAGgu || ||:||:| ||||||| auuCU-ACUUCGA-UACAUUCaa 3 21 98 118 [ce6:II:7155321-7155341:+] 0.6327 144 0 -17.15 -0.5106

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 fust-1; C27H5.3; CELE_C27H5.3 cel-let-7 81 110 UUGAUAUGU-UGGAU------GAUGGAGU- :||||: |||| ||||:||: -UUUAUAUCCACCUUUAUAUUCUACUUCGA fust-1; C27H5.3; CELE_C27H5.3 cel-miR-1 101 118 AUGUAUGAAGAAAUGUAAGGU |||||| ||||||| ---CUACUUCGAUACAUUCA- fust-1; C27H5.3; CELE_C27H5.3 cel-miR-265 1 22 UAUGGUGGGAA---GGAGGGAGU- :|||:| :||||| || --GCCAUCAACUCGUCUCCC-CAU fust-1; C27H5.3; CELE_C27H5.3 cel-miR-796 96 118 AAUGAU-UGGAGUUGAUGUAAGGU ||:| ||:||:| ||||||| AUAUUCUACUUCGA-UACAUUCA- fust-1; C27H5.3; CELE_C27H5.3 cel-miR-81 43 57 UGAUCGAAAGUGCUACUAGAGU ||| ||||||| ------AUUCUC--UGAUCUCU fust-1; C27H5.3; CELE_C27H5.3 cel-miR-82 43 57 UGACCGAAAGUGCUACUAGAGU ||| ||||||| ------AUUCUC--UGAUCUCU fust-1; C27H5.3; CELE_C27H5.3 cel-miR-84 75 110 AUGUUAU------------AAUGUAUGAUGGAGU- ||||| |||:|| ||||:||: AACAAUUUUAUAUCCACCUUUAUAUUCUACUUCGA fust-1; C27H5.3; CELE_C27H5.3 cel-let-7 80 108 uugAUAU-GUUGG----AU--GAUGGAGu |||| | ||| || ||||:|| tttTATATCCACCTTTATATTCTACTTCg fust-1; C27H5.3; CELE_C27H5.3 cel-miR-1 98 118 auguAUGAAGAAAUGUAAGgu |||||| ||||||| attcTACTTCGATACATTCaa fust-1; C27H5.3; CELE_C27H5.3 cel-miR-265 3 21 uauGGUGGGAAGGAGGGagu | ||:| | ||||| catCAACTCGT-CTCCCcat fust-1; C27H5.3; CELE_C27H5.3 cel-miR-796 98 118 aAUGAUUGGAGUUGAUGUAAGgu | || ||:||:| ||||||| aTTCT-ACTTCGA-TACATTCaa fust-1; C27H5.3; CELE_C27H5.3 cel-miR-84 87 108 AUGUUAUAAUGUAUGAUGGAGu | || |||:|| ||||:|| TCCACCTTTATATTCTACTTCg fust-1; C27H5.3; CELE_C27H5.3 cel-miR-81 49 56 UGAUCGA-----------------------AAGUGCUACUAGAGU ||| | ||||||| CUCCCCAUAAAUUUUAACAUCUAAUUUAAAUUCUC--UGAUCUCU fust-1; C27H5.3; CELE_C27H5.3 cel-miR-82 49 56 UGACCGA-----------------------AAGUGCUACUAGAGU ||| | ||||||| CUCCCCAUAAAUUUUAACAUCUAAUUUAAAUUCUC--UGAUCUCU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score fust-1 RAID00410537 cel-miR-1-3p miRNA MIMAT0000003 fust-1 mRNA 174175 CLIP-seq//Prediction 0.6308 fust-1 RAID00942456 cel-miR-79-3p miRNA MIMAT0000051 fust-1 mRNA 174175 NGS (Next Generation Sequencing) 0.5483 fust-1 RAID01119002 cel-miR-81-3p miRNA MIMAT0000054 fust-1 mRNA 174175 CLIP-seq//Prediction 0.6308 fust-1 RAID01344898 cel-miR-252-5p miRNA MIMAT0000308 fust-1 mRNA 174175 CLIP-seq//Prediction 0.6308 fust-1 RAID01467684 cel-miR-2209a-3p miRNA MIMAT0011432 fust-1 mRNA 174175 CLIP-seq 0.5483 fust-1 RAID01525489 cel-miR-87-3p miRNA MIMAT0000060 fust-1 mRNA 174175 CLIP-seq//Prediction 0.6308 fust-1 RAID02436668 cel-miR-58b-3p miRNA MIMAT0006776 fust-1 mRNA 174175 CLIP-seq 0.5483 fust-1 RAID02835829 cel-miR-58a-3p miRNA MIMAT0000030 fust-1 mRNA 174175 CLIP-seq//Prediction 0.6308 fust-1 RAID02943549 cel-miR-80-3p miRNA MIMAT0000053 fust-1 mRNA 174175 CLIP-seq//Prediction 0.6308 fust-1 RAID03353076 cel-miR-82-3p miRNA MIMAT0000055 fust-1 mRNA 174175 CLIP-seq//Prediction 0.6308 fust-1 RAID03632816 cel-miR-796 miRNA MIMAT0004231 fust-1 mRNA 174175 CLIP-seq//Prediction 0.6308 fust-1 RAID03716537 cel-miR-251 miRNA MIMAT0000307 fust-1 mRNA 174175 CLIP-seq//Prediction 0.6308 fust-1 RAID03793535 cel-miR-792-3p miRNA MIMAT0004227 fust-1 mRNA 174175 NGS (Next Generation Sequencing)//Prediction 0.6308