DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015099 cel-miR-51* 259719 C28G1.5 acgUGGACAUGGACGAA-GGUAc :::| ||::| ||| |||| ugaGUUUAUAUUUUCUUGCCAUa 2 20 678 700 [ce6:X:8827247-8827269:-] 0.5000 123 0 -8.87 -1.1157 MIMAT0015105 cel-miR-64* 259719 C28G1.5 cguacggugaCUAGCAACGUg | |:|||||| aguacaaaaaGUUUGUUGCAa 2 12 248 268 [ce6:X:8827679-8827699:-] 0.5000 131 6 -10.72 -0.1360 MIMAT0015110 cel-miR-84* 259719 C28G1.5 cggcucaAUCAACUUUGUAACAc || || |||||||| uuuuuacUAAAUG-AACAUUGUu 2 17 1295 1316 [ce6:X:8826631-8826652:-] 0.5000 150 7 -8.38 -1.0976 MIMAT0015114 cel-miR-238* 259719 C28G1.5 cgaaacUUGCAGGCUCUU-GUAGGu :|:|| | | || ||||| cccuccGAUGUGCAAAAACCAUCCa 2 19 18 42 [ce6:X:8828033-8828057:-] 0.5321 122 0 -13.13 -0.4174 MIMAT0015118 cel-miR-244* 259719 C28G1.5 aggaAAUCGACUUUUCGUCau | | || |||||| aagcUCAUCUUUUAAGCAGaa 3 18 812 832 [ce6:X:8827115-8827135:-] 0.5000 125 0 -9.50 -0.1496 MIMAT0000315 cel-miR-260 259719 C28G1.5 gauguucuCAAGCUGUAGUg || ||||||| uucuauccGUAGGACAUCAa 2 13 521 540 [ce6:X:8827407-8827426:-] 0.5000 144 7 -11.98 -0.5787 MIMAT0000316 cel-miR-261 259719 C28G1.5 gcacuUUUGAUUUUUCGAu |||| ||||||| guuucAAAC--AAAAGCUc 2 15 542 558 [ce6:X:8827389-8827405:-] 0.5000 147 7 -6.33 -0.3189 MIMAT0000316 cel-miR-261 259719 C28G1.5 gcacuUUUGAUUUUUCGAu |: | ||||||| cuuuuAGUCACAAAAGCUc 2 15 799 817 [ce6:X:8827130-8827148:-] 0.5000 142 7 -5.22 -0.3885 MIMAT0000322 cel-miR-266 259719 C28G1.5 cgaAACGGUUUCAGAACGGa || :| ||||||| gagUUUAUAUUUUCUUGCCa 2 18 679 698 [ce6:X:8827249-8827268:-] 0.5000 141 7 -11.07 -1.2503 MIMAT0000324 cel-miR-268 259719 C28G1.5 ugguuugaCGAAGAU-UAAGAACGg |:|| || ||||||| gcacgugaGUUUAUAUUUUCUUGCc 2 17 673 697 [ce6:X:8827250-8827274:-] 0.5000 151 7 -15.63 -0.9885 MIMAT0000325 cel-miR-269 259719 C28G1.5 ucaaaacggucucAGAACGg |||||| ugaguuuauauuuUCUUGCc 2 8 678 697 [ce6:X:8827250-8827269:-] 0.5000 120 6 -13.25 -0.1152 MIMAT0000698 cel-miR-356 259719 C28G1.5 acuaaaCAAGCGCAACG-AGUu |||||: |||| ||| ggccgaGUUCGU-UUGCGUCAc 2 16 51 71 [ce6:X:8827876-8827877,8828006-8828024:-] 0.5321 121 0 -13.82 -0.1255 MIMAT0015239 cel-miR-786* 259719 C28G1.5 caUUUAUGGGGUUGACUAUAAGc ||||| :||| ||||||| uaAAAUA---UAACGGAUAUUCu 2 22 1209 1228 [ce6:X:8826719-8826738:-] 0.5000 161 7 -10.27 -0.6655 MIMAT0015241 cel-miR-797* 259719 C28G1.5 uaaAGUGUCU-UUGG---UUACUUuu ||| | | ||:| |||||| ccaUCAAAAAUAAUCAAAAAUGAAca 3 20 904 929 [ce6:X:8827018-8827043:-] 0.5000 129 0 -6.54 -0.1343 MIMAT0015241 cel-miR-797* 259719 C28G1.5 uaaagugucuuUGG-UUACUUuu ||: |||||| guuuuuuuuuuACUAAAUGAAca 3 12 1289 1311 [ce6:X:8826636-8826658:-] 0.5000 122 0 -4.75 -0.1645 MIMAT0006587 cel-miR-1820 259719 C28G1.5 cuugUAGUAGCUUUUUGUUAGUUUu | |||| |||||:||||||| aauaACCAUC-AAAAAUAAUCAAAa 2 22 899 922 [ce6:X:8827025-8827048:-] 0.5000 179 7 -18.08 -1.2111 MIMAT0006587 cel-miR-1820 259719 C28G1.5 cuuguagUAGCUUUUUGUUAGUUUu ||:| || :|||||||| ggcaaaaAUUGCAACGCAAUCAAAu 2 19 639 663 [ce6:X:8827284-8827308:-] 0.5000 166 7 -12.93 -0.1699 MIMAT0006771 cel-miR-1829c 259719 C28G1.5 auGUUGGUAGAACUU-AAAG-CGAa :||| ||:| |:| |||| ||| caUAACAAUUUAGGAUUUUCAGCUc 2 22 1128 1152 [ce6:X:8826795-8826819:-] 0.5000 132 0 -12.35 -0.7515 MIMAT0011428 cel-miR-2208a* 259719 C28G1.5 acuucauAUGGUCUUUGACGUa || :|||||||||| gccgcauUAAUAGAAACUGCAg 2 16 987 1008 [ce6:X:8826939-8826960:-] 0.5000 163 7 -16.05 -0.2553 MIMAT0011444 cel-miR-2214 259719 C28G1.5 uugcggccaguucaaCAACAGUUAc ||||||||| ---------------GUUGUCAAUu 2 11 1 10 [ce6:X:8828065-8828074:-] 0.5321 150 7 -9.67 -0.3012 MIMAT0011454 cel-miR-2209b 259719 C28G1.5 acuucgUGUUGGCGAGUAGAga |:|||| :|||||| gauucaAUAACCAUUCAUCUaa 3 17 1237 1258 [ce6:X:8826689-8826710:-] 0.5000 144 0 -17.08 -0.2047 MIMAT0011455 cel-miR-2218a 259719 C28G1.5 acuccgAAUUUUGAACA-UCAAAc |||| :| || ||||| auguugUUAACGCACGUGAGUUUa 2 18 662 685 [ce6:X:8827262-8827285:-] 0.5000 121 0 -5.50 -0.8038 MIMAT0014446 cel-miR-2953-5p 259719 C28G1.5 uaaaaGUGCUUGUGAAGACAu | :||| |||||||| cuaaaCUUGAAAACUUCUGUg 2 17 203 223 [ce6:X:8827724-8827744:-] 0.5000 160 7 -17.20 -0.7406 MIMAT0000021 cel-miR-50 259719 C28G1.5 gggUUCUUAUGGUCUG-UAUAGu |||||| :| || ||||| ugaAAGAAUUUC--ACAAUAUCa 2 20 566 586 [ce6:X:8827361-8827381:-] 0.5000 124 0 -13.74 -0.4986 MIMAT0000023 cel-miR-52 259719 C28G1.5 ucgugCCUUUGUAUACAU-GCCCAc |||||| | | || ||||| aaauaGGAAAC-U-UCUACCGGGUa 2 20 1085 1107 [ce6:X:8826840-8826862:-] 0.5000 123 0 -16.19 -0.6363 MIMAT0000024 cel-miR-53 259719 C28G1.5 ucgugCCUUUGUUUACAU-GCCCAc |||||| | || ||||| aaauaGGAAAC--UUCUACCGGGUa 2 20 1085 1107 [ce6:X:8826840-8826862:-] 0.5000 120 0 -16.19 -0.6400 MIMAT0000026 cel-miR-55 259719 C28G1.5 gagucgUCUUUGAAUAU-GCCCAu :||||||| || ||||| uaaauaGGAAACUUCUACCGGGUa 2 18 1084 1107 [ce6:X:8826840-8826863:-] 0.5000 137 0 -20.06 -0.6326 MIMAT0000028 cel-miR-56 259719 C28G1.5 gagucgCCUUUGUA-AU-GCCCAu |||||| | || ||||| uaaauaGGAAACUUCUACCGGGUa 2 17 1084 1107 [ce6:X:8826840-8826863:-] 0.5000 127 0 -18.77 -0.6437 MIMAT0000032 cel-miR-60 259719 C28G1.5 acuUGAUCUUUUAC-ACGU-AUUAu | |||||| || ||| |||| auuAAUAGAAACUGCAGCACUAAUu 2 21 992 1016 [ce6:X:8826931-8826955:-] 0.5000 131 0 -9.20 -0.3326 MIMAT0000032 cel-miR-60 259719 C28G1.5 acuUGAUCUUUUA--CA---CGU-AUUAu | |:|||||| || ||| |||| uuuAAUGGAAAAUGGGUGCCGCAUUAAUa 2 21 970 998 [ce6:X:8826949-8826977:-] 0.5000 122 0 -12.87 -0.3363 MIMAT0000043 cel-miR-71 259719 C28G1.5 aguGAUGG-GUACAGAAAGu | ||| :: ||||||| aauCAACCUUGCGUCUUUCa 2 17 1178 1197 [ce6:X:8826750-8826769:-] 0.5000 147 7 -15.75 -0.7671 MIMAT0000044 cel-miR-72 259719 C28G1.5 agucgauacgGUUGUAGAACGGa :| : ||||||| cgugaguuuaUAUUUUCUUGCCa 2 14 676 698 [ce6:X:8827249-8827271:-] 0.5000 141 7 -13.16 -1.2515 MIMAT0000045 cel-miR-73 259719 C28G1.5 ugACUUGACGGAU-GUAGAACGGu |||::| : || : ||||||| cgUGAGUU-UAUAUUUUCUUGCCa 2 22 676 698 [ce6:X:8827249-8827271:-] 0.5000 150 7 -17.94 -1.2515 MIMAT0000046 cel-miR-74 259719 C28G1.5 acaUCUGACGGUAAAGAACGGu || :| : ||||||||| gugAGUUUAUAUUUUCUUGCCa 2 20 677 698 [ce6:X:8827249-8827270:-] 0.5000 155 7 -16.67 -1.2515 MIMAT0000058 cel-miR-85 259719 C28G1.5 cgUGCUGAAAAGUUUAUGAA-ACAu || | || ||| |||| ||| aaACUAAACUUGAAA-ACUUCUGUg 2 23 200 223 [ce6:X:8827724-8827747:-] 0.5000 120 0 -7.37 -0.7301 MIMAT0000283 cel-miR-228 259719 C28G1.5 ggCACUUAAGU---ACGUCACGGUAa ||||:||:| | : |||||| acGUGAGUUUAUAUUUUCUUGCCAUa 2 22 675 700 [ce6:X:8827247-8827272:-] 0.5000 128 6 -21.16 -0.1194 MIMAT0000293 cel-miR-238 259719 C28G1.5 agacuuACCGUAGC--CUCAUGUUu | ||||:| ||||||| ucaaucUUGCAUUGAACAGUACAAa 2 18 231 255 [ce6:X:8827692-8827716:-] 0.5000 152 7 -15.56 -0.6944 MIMAT0000294 cel-miR-239a 259719 C28G1.5 ggucAUGGAUACACAUCAUGUUu |:| | || ||||||| aucuUGCAU-UGAACAGUACAAa 2 20 234 255 [ce6:X:8827692-8827713:-] 0.5000 145 7 -10.57 -0.7055 MIMAT0000295 cel-miR-239b 259719 C28G1.5 gucaugaaAACACAUCAUGUUu ||| ||||||| aucuugcaUUGAACAGUACAAa 2 15 234 255 [ce6:X:8827692-8827713:-] 0.5000 146 7 -10.00 -0.7055 MIMAT0000307 cel-miR-251 259719 C28G1.5 uuauUCUCGCC-GUGGUGAUGAAUu | | ||| :|:: ||||||| aaauAUAACGGAUAUU-CUACUUAu 2 21 1211 1234 [ce6:X:8826713-8826736:-] 0.5000 149 7 -14.84 -1.0515 MIMAT0000308 cel-miR-252 259719 C28G1.5 aauggacGCC-GUGAUGAUGAAUa ||| :|:| ||||||| aauauaaCGGAUAUU-CUACUUAu 2 17 1212 1234 [ce6:X:8826713-8826735:-] 0.5000 149 7 -17.03 -1.0515 MIMAT0004219 cel-miR-784 259719 C28G1.5 agaUGCAUGCGUCUAAC-ACGGu |:| | |||||||| |||| aagAUGCA-GCAGAUUGCUGCCu 2 20 473 494 [ce6:X:8827453-8827474:-] 0.5000 133 0 -20.89 -0.2244 MIMAT0004220 cel-miR-785 259719 C28G1.5 agaUGUGUUUUGU-UAAG-UGAAu |:|:|| : | |||| |||| aaaAUAUAACGGAUAUUCUACUUa 2 20 1210 1233 [ce6:X:8826714-8826737:-] 0.5000 122 0 -10.63 -1.1831 MIMAT0004225 cel-miR-790 259719 C28G1.5 gcgcCACAAGCGCUCACG-GUUc || ||: | ||||| ||| uaaaGUUUUUUC-AGUGCUCAAc 2 19 289 310 [ce6:X:8827637-8827658:-] 0.5000 120 0 -12.58 -0.5081 MIMAT0004227 cel-miR-792 259719 C28G1.5 agacUUUCAACUUCUCUAAAGUu |||| | ||||||| acauAAAGACAUAAUGAUUUCAu 2 20 859 881 [ce6:X:8827066-8827088:-] 0.5000 147 7 -8.08 -0.9459

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score C28G1.5 RAID00249569 cel-miR-228-5p miRNA MIMAT0000283 C28G1.5 mRNA 259719 Prediction 0.1828 C28G1.5 RAID00714514 cel-miR-60-3p miRNA MIMAT0000032 C28G1.5 mRNA 259719 Prediction 0.1828 C28G1.5 RAID00921265 cel-miR-71-5p miRNA MIMAT0000043 C28G1.5 mRNA 259719 Prediction 0.1828 C28G1.5 RAID01165569 cel-miR-72-5p miRNA MIMAT0000044 C28G1.5 mRNA 259719 Prediction 0.1828 C28G1.5 RAID01231843 cel-miR-238-3p miRNA MIMAT0000293 C28G1.5 mRNA 259719 Prediction 0.1828 C28G1.5 RAID01287577 cel-miR-50-5p miRNA MIMAT0000021 C28G1.5 mRNA 259719 Prediction 0.1828 C28G1.5 RAID01315365 cel-miR-790-5p miRNA MIMAT0004225 C28G1.5 mRNA 259719 Prediction 0.1828 C28G1.5 RAID01458145 cel-miR-85-3p miRNA MIMAT0000058 C28G1.5 mRNA 259719 Prediction 0.1828 C28G1.5 RAID01857741 cel-miR-52-5p miRNA MIMAT0000023 C28G1.5 mRNA 259719 Prediction 0.1828 C28G1.5 RAID01955153 cel-miR-56-3p miRNA MIMAT0000028 C28G1.5 mRNA 259719 Prediction 0.1828 C28G1.5 RAID02001078 cel-miR-784-5p miRNA MIMAT0004219 C28G1.5 mRNA 259719 Prediction 0.1828 C28G1.5 RAID02029348 cel-miR-73-3p miRNA MIMAT0000045 C28G1.5 mRNA 259719 Prediction 0.1828 C28G1.5 RAID02105221 cel-miR-53-5p miRNA MIMAT0000024 C28G1.5 mRNA 259719 Prediction 0.1828 C28G1.5 RAID02265966 cel-miR-74-3p miRNA MIMAT0000046 C28G1.5 mRNA 259719 Prediction 0.1828 C28G1.5 RAID02334742 cel-miR-785-3p miRNA MIMAT0004220 C28G1.5 mRNA 259719 Prediction 0.1828 C28G1.5 RAID02423369 cel-miR-792-3p miRNA MIMAT0004227 C28G1.5 mRNA 259719 Prediction 0.1828 C28G1.5 RAID02952277 cel-miR-239a-5p miRNA MIMAT0000294 C28G1.5 mRNA 259719 Prediction 0.1828 C28G1.5 RAID03232299 cel-miR-55-3p miRNA MIMAT0000026 C28G1.5 mRNA 259719 Prediction 0.1828 C28G1.5 RAID03236019 cel-miR-239b-5p miRNA MIMAT0000295 C28G1.5 mRNA 259719 Prediction 0.1828 C28G1.5 RAID03758743 cel-miR-252-5p miRNA MIMAT0000308 C28G1.5 mRNA 259719 Prediction 0.1828 C28G1.5 RAID03941243 cel-miR-251 miRNA MIMAT0000307 C28G1.5 mRNA 259719 Prediction 0.1828