DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT033317 cel-miR-392-3p Caenorhabditis elegans EEED8.16 173917 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT032855 cel-miR-1020-3p Caenorhabditis elegans EEED8.16 173917 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT032606 cel-miR-1829b-5p Caenorhabditis elegans EEED8.16 173917 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT032580 cel-miR-1829c-5p Caenorhabditis elegans EEED8.16 173917 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015240 cel-miR-788* 173917 EEED8.16 gcuaagauuagGUAAAGg |||||| ugcauauugaaCAUUUCu 2 8 37 54 [ce6:II:5390356-5390373:-] 0.4739 120 6 -6.85 -0.1461 MIMAT0005522 cel-miR-1021 173917 EEED8.16 ggcuccuAAAGUGUA---C---UAGAGUGAa |||||:|| | :||||||| auagucuUUUCAUAUAUGGUUAGUCUCACUu 2 19 58 88 [ce6:II:5390322-5390352:-] 0.4739 148 7 -17.02 -0.8106 MIMAT0006769 cel-miR-1829a 173917 EEED8.16 uuaucucuuuaagguUACCAAc |||||| auagucuuuucauauAUGGUUa 2 8 58 79 [ce6:II:5390331-5390352:-] 0.4739 120 6 -9.59 -0.1360 MIMAT0011449 cel-miR-1832b* 173917 EEED8.16 uuUCACCCGGCUCGC-UAAGCGAc ||| :: | :| ||||||| guAGUUUAUUUAAUGCAUUCGCUu 2 22 154 177 [ce6:II:5390233-5390256:-] 0.4739 144 7 -10.37 -0.7792 MIMAT0011449 cel-miR-1832b* 173917 EEED8.16 uuucacccggcucgcUAAGCGAc ||||||| cucacuugaauauuuAUUCGCUu 2 9 82 104 [ce6:II:5390306-5390328:-] 0.4739 140 7 -8.31 -0.9960 MIMAT0011455 cel-miR-2218a 173917 EEED8.16 acUCCGAAUUUUGAACAUCAAAc | |: |: |:| ||||||| auAUGUAUGCAGCCGGUAGUUUa 2 22 139 161 [ce6:II:5390249-5390271:-] 0.4739 153 7 -9.20 -0.4749 MIMAT0011463 cel-miR-2221 173917 EEED8.16 ugAUCGCCAGACCAUAGUGAAc || :||| | || |||||| uaUA-UGGU-UAGUCUCACUUg 2 21 70 89 [ce6:II:5390321-5390340:-] 0.4739 128 6 -16.77 -0.1125 MIMAT0000043 cel-miR-71 173917 EEED8.16 agUGAUGGG--UA-CAGAAAGu |:| |:: || ||||||: acAUUUCUUUAAUAGUCUUUUc 2 18 47 68 [ce6:II:5390342-5390363:-] 0.4739 127 0 -9.86 -0.1287 MIMAT0000059 cel-miR-86 173917 EEED8.16 cugacaccguuucguaAGUGAAu |||||| ucauauaugguuagucUCACUUg 2 8 67 89 [ce6:II:5390321-5390343:-] 0.4739 120 6 -12.76 -0.1136 MIMAT0004220 cel-miR-785 173917 EEED8.16 agauguguuuuguuaAGUGAAu |||||| cauauaugguuagucUCACUUg 2 8 68 89 [ce6:II:5390321-5390342:-] 0.4739 120 6 -11.63 -0.1170

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 brap-2; EEED8.16 cel-lin-4 1 18 AGUGUGAACUCCAGAGUCC-CU- |||: ||||||| || ------UUGGCAUCUCAGGAGAU brap-2; EEED8.16 cel-miR-232 149 174 AGUGGC-GUCAAUUC---UACGUAAAU :||| :|||| ||||||| -AGCCGGUAGUUUAUUUAAUGCAUUC- brap-2; EEED8.16 cel-miR-241 98 122 -AGU-AAAGAGCGUGGAUGGAGU- ||: |||||: |:| ||:|||| UUCGCUUUCUUUCGCGUAUCUCAU brap-2; EEED8.16 cel-miR-256 130 155 -AUGUCAGAAGAUACGUAA---GGU- |:|:|| ||||:|| ||: GUGCGGUAUA-UAUGUAUGCAGCCGG brap-2; EEED8.16 cel-miR-268 17 41 UGGUUUGACGA---AGAUUAAGAACGG ||| ||: |:|||||:|||| UCCA---UGUCCUAUUUAAUUUUUGCA brap-2; EEED8.16 cel-miR-40 133 157 AAUCGAC--UACA--UGUGGGCCACU :|: |||| :|| ||||| -CGGUAUAUAUGUAUGCAGCCGGUA- brap-2; EEED8.16 cel-miR-55 116 137 -GAGUCGUCUUUGAAUAUGCCCAU |||| | ||| :||:|:||| UCUCAUC-GAAUUUUGUGCGGU-- brap-2; EEED8.16 cel-miR-86 152 178 CUGACACCGUUU---------CGUAAGUGAAU ||:|: ||||||:||| -----CGGUAGUUUAUUUAAUGCAUUCGCUU- brap-2; EEED8.16 cel-miR-232 147 174 aGU-GG-CGUCAAUU---CUACGUAAau || || |:|||| | ||||||| gCAGCCGGTAGTTTATTTAATGCATTcg brap-2; EEED8.16 cel-miR-241 99 120 AGU-AAAGAGCGUGGAUGGAGU ||: |||||: |:| ||:|||| TCGCTTTCTTTCGCGTATCTCA brap-2; EEED8.16 cel-miR-256 153 175 augUCAGA-AGA-UACGUAAGgu |||:| |:| |||||||| ggtAGTTTATTTAATGCATTCgc brap-2; EEED8.16 cel-miR-268 16 40 UGGUUUGACGA-AGAUUAAGAACGg |:| | | || |:|||||:|||| ATCCATGTCCTATTTAATTTTTGCa brap-2; EEED8.16 cel-miR-40 134 157 aaucgacUACAU--GUGGGCCAcu ||||| || ||||| ggtatatATGTATGCAGCCGGTag brap-2; EEED8.16 cel-miR-55 117 138 GAGUCGUCUUUGAAUAUGCCcau |||| | ||| :||:|:||| CTCATC-GAATTTTGTGCGGtat brap-2; EEED8.16 cel-miR-86 150 177 CUGACACC------GUUUCGUAAGUGAAu | | || | :|| ||||||:||| GCCGGTAGTTTATTTAATGCATTCGCTT-

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score brap-2 RAID00423832 cel-miR-785-3p miRNA MIMAT0004220 brap-2 mRNA 173917 Prediction 0.1828 brap-2 RAID01413225 cel-miR-1829b-5p miRNA MIMAT0006770 brap-2 mRNA 173917 NGS (Next Generation Sequencing) 0.5483 brap-2 RAID02703993 cel-miR-1020-3p miRNA MIMAT0005033 brap-2 mRNA 173917 NGS (Next Generation Sequencing) 0.5483 brap-2 RAID02961389 cel-miR-392-3p miRNA MIMAT0000768 brap-2 mRNA 173917 NGS (Next Generation Sequencing) 0.5483 brap-2 RAID03410275 cel-miR-71-5p miRNA MIMAT0000043 brap-2 mRNA 173917 Prediction 0.1828 brap-2 RAID03412188 cel-miR-86-5p miRNA MIMAT0000059 brap-2 mRNA 173917 Prediction 0.1828 brap-2 RAID03680835 cel-miR-1829c-5p miRNA MIMAT0006771 brap-2 mRNA 173917 NGS (Next Generation Sequencing) 0.5483