DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015113 cel-miR-230* 180800 vps-41 auUAUAAUUUAGCGGCUGGUUCa || | |||: |: |||||| ucAUCAUCAAUU-CUAACCAAGa 2 22 258 279 [ce6:X:5289284-5289305:+] 0.6097 127 6 -10.30 -0.2869 MIMAT0015115 cel-miR-239b* 180800 vps-41 aaAAACGUGUGGUGUUUUCACg ||| |: | :|:||||||| agUUUUCGGA-UAUAAAAGUGu 2 21 291 311 [ce6:X:5289317-5289337:+] 0.6097 158 7 -13.65 -1.0862 MIMAT0000313 cel-miR-258 180800 vps-41 uuuuccUAAGG---AGAGUUUUGg |||:| :||||||: ugucaaAUUUCAAACUUCAAAAUu 2 16 64 87 [ce6:X:5289571-5289594:+] 0.4822 126 0 -8.10 -0.1136 MIMAT0000698 cel-miR-356 180800 vps-41 acuaaacaagcgcaACGAGUu |||||| agauguucauuaugUGCUCAa 2 8 236 256 [ce6:X:5289262-5289282:+] 0.6097 120 6 -14.74 -0.3384 MIMAT0005522 cel-miR-1021 180800 vps-41 ggcUCCUAAAGUGUACUAGAGUGAa | ||| | | ||| ||||||| ugaACGAUCUGA-AUGUUCUCACUc 2 23 162 185 [ce6:X:5289188-5289211:+] 0.6097 164 7 -15.99 -0.6295 MIMAT0015266 cel-miR-1822* 180800 vps-41 cggcuaucgaaagggucUCUUUGa |||||| aucaucaauucuaaccaAGAAACa 2 8 260 283 [ce6:X:5289286-5289309:+] 0.6097 120 6 -10.14 -0.1618 MIMAT0006589 cel-miR-1822 180800 vps-41 ucucaaaaagacucCCGUCGAg ||||||| caaggacugauaucGGCAGCUg 2 9 185 206 [ce6:X:5289211-5289232:+] 0.6097 140 7 -16.04 -0.6009 MIMAT0006769 cel-miR-1829a 180800 vps-41 uuauCUCUUUAAGG----UUACCAAc |:|||||| : ||||||| ---uGGGAAAUUAUUAAAAAUGGUUc 2 19 1 23 [ce6:X:5289027-5289049:+] 0.4310 153 7 -14.07 -0.7871 MIMAT0011425 cel-miR-2207 180800 vps-41 gaauaugugucAGAGUUAAGUgu | |:|||||| ----------aUAUUAAUUCAgg 3 13 1 13 [ce6:X:5289508-5289520:+] 0.5497 128 0 -6.20 -0.1522 MIMAT0011425 cel-miR-2207 180800 vps-41 gaaUAUGUGUCAGAGUUAAGUgu :|::| | | |:|||||| aacGUGUA-AAUAUUAAUUCAgg 3 21 422 443 [ce6:X:5289499-5289520:+] 0.5497 134 0 -9.60 -0.1708 MIMAT0011444 cel-miR-2214 180800 vps-41 uugcggccaguucaacaACAGUUac |||||| aaauuugaaauuucaaaUGUCAAau 3 9 47 71 [ce6:X:5289554-5289578:+] 0.4822 120 0 -6.19 -0.1290 MIMAT0011447 cel-miR-2216 180800 vps-41 cggauggcUGAAUUUUACAcg |:|| |||||| aauuugaaAUUUCAAAUGUca 3 14 48 68 [ce6:X:5289555-5289575:+] 0.4822 133 0 -8.08 -0.1026 MIMAT0011461 cel-miR-2220* 180800 vps-41 cuAUUUAUCAAAUACCAGAAUg || ||| | | |||||| guUAUAUAUAUGUUUGUCUUAu 2 21 133 154 [ce6:X:5289640-5289661:+] 0.4271 128 6 -9.04 -0.1772 MIMAT0000004 cel-miR-2 180800 vps-41 cguguaguuucgaccGACACUAu ||||||| uacuuauguucauuuCUGUGAUc 2 9 97 119 [ce6:X:5289604-5289626:+] 0.4822 140 7 -9.42 -0.7271 MIMAT0000004 cel-miR-2 180800 vps-41 cguguaguuucgaccGACACUAu ||||||| uacuuauguucauuuCUGUGAUc 2 9 527 549 [ce6:X:5289604-5289626:+] 0.4822 140 7 -9.42 -0.6354 MIMAT0000014 cel-miR-43 180800 vps-41 cgcugucguucauuuGACACUAu ||||||| uacuuauguucauuuCUGUGAUc 2 9 97 119 [ce6:X:5289604-5289626:+] 0.4822 140 7 -8.87 -0.7160 MIMAT0000014 cel-miR-43 180800 vps-41 cgcugucguucauuuGACACUAu ||||||| uacuuauguucauuuCUGUGAUc 2 9 527 549 [ce6:X:5289604-5289626:+] 0.4822 140 7 -8.87 -0.6243 MIMAT0000031 cel-miR-59 180800 vps-41 guaguaggaCUAUUUGC-UAAGCu || ||||| ||||| ugcaaaaacGA-AAACGCAUUCGc 2 15 106 128 [ce6:X:5289132-5289154:+] 0.5203 120 0 -12.06 -0.7254 MIMAT0000049 cel-miR-77 180800 vps-41 acCUGUCGAUA-CCG--GACUACUu ||| | ||| ||| ||||||| agGACUGAUAUCGGCAGCUGAUGAa 2 21 187 211 [ce6:X:5289213-5289237:+] 0.6097 162 7 -23.82 -0.8177 MIMAT0000058 cel-miR-85 180800 vps-41 cgugcUGAA-AA-GUUUAUGAA-ACAu |:|| || |:: ||||| ||| ucaaaAUUUAUUACGGCUACUUAUGUu 2 20 80 106 [ce6:X:5289587-5289613:+] 0.4822 121 0 -11.09 -0.8837 MIMAT0000058 cel-miR-85 180800 vps-41 cgugcUGAA-AA-GUUUAUGAA-ACAu |:|| || |:: ||||| ||| ucaaaAUUUAUUACGGCUACUUAUGUu 2 20 510 536 [ce6:X:5289587-5289613:+] 0.4822 121 0 -11.09 -0.7912 MIMAT0000059 cel-miR-86 180800 vps-41 cugACACC-GUUUCGUAAGUGAAu || || || | : ||||||| aaaUGCGGACACAUUUUUCACUUg 2 21 314 337 [ce6:X:5289340-5289363:+] 0.6097 155 7 -13.14 -0.5894 MIMAT0000060 cel-miR-87 180800 vps-41 cguguggacuuugaaACGAGUg |||||| cagauguucauuaugUGCUCAa 2 8 235 256 [ce6:X:5289261-5289282:+] 0.6097 120 6 -9.57 -0.3525 MIMAT0000288 cel-miR-233 180800 vps-41 ggcguguacgcguaACGAGUu |||||| agauguucauuaugUGCUCAa 2 8 236 256 [ce6:X:5289262-5289282:+] 0.6097 120 6 -13.66 -0.3468 MIMAT0000304 cel-miR-248 180800 vps-41 acucgcaaUAGGCACGUGCACAUa | :| | ||||||| caaaucgaACUCAUCAACGUGUAa 2 17 407 430 [ce6:X:5289484-5289507:+] 0.5497 144 7 -12.60 -1.2316 MIMAT0000306 cel-miR-250 180800 vps-41 acgguuGUCAACUGACACUAa || || ||||||| uauguuCAUUU--CUGUGAUc 2 16 101 119 [ce6:X:5289608-5289626:+] 0.4822 144 7 -9.15 -0.6872 MIMAT0000306 cel-miR-250 180800 vps-41 acgguuGUCAACUGACACUAa || || ||||||| uauguuCAUUU--CUGUGAUc 2 16 531 549 [ce6:X:5289608-5289626:+] 0.4822 144 7 -9.15 -0.5958 MIMAT0000307 cel-miR-251 180800 vps-41 uuauucucgccGUGGUGAUGAAUu :|| :||||||| ucaaaauuuauUACGGCUACUUAu 2 14 80 103 [ce6:X:5289587-5289610:+] 0.4822 149 7 -11.91 -0.5783 MIMAT0000307 cel-miR-251 180800 vps-41 uuauucucgccGUGGUGAUGAAUu :|| :||||||| ucaaaauuuauUACGGCUACUUAu 2 14 510 533 [ce6:X:5289587-5289610:+] 0.4822 149 7 -11.91 -0.4801 MIMAT0000308 cel-miR-252 180800 vps-41 aauggacgccGUGAUGAUGAAUa :|| :||||||| caaaauuuauUACGGCUACUUAu 2 14 81 103 [ce6:X:5289588-5289610:+] 0.4822 149 7 -12.54 -0.5783 MIMAT0000308 cel-miR-252 180800 vps-41 aauggacgccGUGAUGAUGAAUa :|| :||||||| caaaauuuauUACGGCUACUUAu 2 14 511 533 [ce6:X:5289588-5289610:+] 0.4822 149 7 -12.54 -0.4801 MIMAT0000697 cel-miR-355 180800 vps-41 guaucgaguccgaUUUUGUUu :|||||| caauucuaaccaaGAAACAAc 2 9 265 285 [ce6:X:5289291-5289311:+] 0.6097 124 6 -4.33 -0.2161 MIMAT0004220 cel-miR-785 180800 vps-41 agaUGUGUUU-UGU--UAAGUGAAu |::|::| ||| ||||||| caaAUGCGGACACAUUUUUCACUUg 2 20 313 337 [ce6:X:5289339-5289363:+] 0.6097 149 7 -14.69 -0.5858 MIMAT0004225 cel-miR-790 180800 vps-41 gcgCCACAAGCGCU-CACG-GUUc | ||||| : | |||| ||| ccaGAUGUUCAUUAUGUGCUCAAa 2 20 234 257 [ce6:X:5289260-5289283:+] 0.6097 122 0 -12.04 -1.1931 MIMAT0004232 cel-miR-797 180800 vps-41 agAAGAGUAACACUAACGACACUAu | ||:|| | ||| ||||||| gcUACUUAUGUUCAUUUCUGUGAUc 2 24 95 119 [ce6:X:5289602-5289626:+] 0.4822 171 7 -16.48 -0.7122 MIMAT0004232 cel-miR-797 180800 vps-41 agAAGAGUAACACUAACGACACUAu | ||:|| | ||| ||||||| gcUACUUAUGUUCAUUUCUGUGAUc 2 24 525 549 [ce6:X:5289602-5289626:+] 0.4822 171 7 -16.48 -0.6206

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score vps-41 RAID00470288 cel-miR-790-5p miRNA MIMAT0004225 vps-41 mRNA 180800 Prediction 0.1828 vps-41 RAID00649085 cel-miR-355-5p miRNA MIMAT0000697 vps-41 mRNA 180800 Prediction 0.1828 vps-41 RAID00690174 cel-miR-251 miRNA MIMAT0000307 vps-41 mRNA 180800 Prediction 0.1828 vps-41 RAID01230009 cel-miR-86-5p miRNA MIMAT0000059 vps-41 mRNA 180800 Prediction 0.1828 vps-41 RAID01406829 cel-miR-59-3p miRNA MIMAT0000031 vps-41 mRNA 180800 Prediction 0.1828 vps-41 RAID01828901 cel-miR-248 miRNA MIMAT0000304 vps-41 mRNA 180800 Prediction 0.2202 vps-41 RAID01870603 cel-miR-250-3p miRNA MIMAT0000306 vps-41 mRNA 180800 Prediction 0.2202 vps-41 RAID02335540 cel-miR-785-3p miRNA MIMAT0004220 vps-41 mRNA 180800 Prediction 0.1828 vps-41 RAID02343933 cel-miR-77-3p miRNA MIMAT0000049 vps-41 mRNA 180800 Prediction 0.1828 vps-41 RAID02364073 cel-miR-252-5p miRNA MIMAT0000308 vps-41 mRNA 180800 Prediction 0.1828 vps-41 RAID02560279 cel-miR-87-3p miRNA MIMAT0000060 vps-41 mRNA 180800 Prediction 0.1828 vps-41 RAID02935495 cel-miR-85-3p miRNA MIMAT0000058 vps-41 mRNA 180800 Prediction 0.1828 vps-41 RAID03118044 cel-miR-797-5p miRNA MIMAT0004232 vps-41 mRNA 180800 Prediction 0.2381 vps-41 RAID03632298 cel-miR-2-3p miRNA MIMAT0000004 vps-41 mRNA 180800 Prediction 0.2202 vps-41 RAID03687746 cel-miR-233-3p miRNA MIMAT0000288 vps-41 mRNA 180800 Prediction 0.1828 vps-41 RAID04026032 cel-miR-43-3p miRNA MIMAT0000014 vps-41 mRNA 180800 Prediction 0.2202