DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015099 cel-miR-51* 179246 atg-18 acguGGACAUGG-ACGAAGGUAc ||||| :| | :|||||| uauuCCUGUCUCAUUUUUCCAUc 2 19 96 118 [ce6:V:8629583-8629605:-] 0.5863 145 6 -16.33 -0.2150 MIMAT0015099 cel-miR-51* 179246 atg-18 acguGGACAUGG-ACGAAGGUAc ||||| :| | :|||||| uauuCCUGUCUCAUUUUUCCAUc 2 19 161 183 [ce6:V:8629583-8629605:-] 0.5863 145 6 -16.33 -0.2087 MIMAT0015110 cel-miR-84* 179246 atg-18 cggcucaaucaacuuuGUAACAc |||||| uauaaucacaucgauuCAUUGUu 2 8 443 465 [ce6:V:8629236-8629258:-] 0.5175 120 6 -6.90 -0.1745 MIMAT0015110 cel-miR-84* 179246 atg-18 cggcucaaucaacuuuGUAACAc |||||| uauaaucacaucgauuCAUUGUu 2 8 508 530 [ce6:V:8629236-8629258:-] 0.5175 120 6 -6.90 -0.1686 MIMAT0000312 cel-miR-257 179246 atg-18 agugacccAUGAGGAC-UAUGAg | :||||| ||||| uaucacauUUUUCCUGAAUACUu 2 15 301 323 [ce6:V:8629378-8629400:-] 0.4709 122 0 -17.95 -0.9611 MIMAT0000312 cel-miR-257 179246 atg-18 agugACCCAUGAGGACUA-UGAg ||| : ||||||| ||| aauaUGGACGAUCCUGAUGACUu 2 19 15 37 [ce6:V:8629729-8629751:-] 0.5863 126 0 -17.40 -0.2406 MIMAT0000312 cel-miR-257 179246 atg-18 agugacccAUGAGGAC-UAUGAg | :||||| ||||| uaucacauUUUUCCUGAAUACUu 2 15 366 388 [ce6:V:8629378-8629400:-] 0.4709 122 0 -17.95 -0.9529 MIMAT0000326 cel-miR-270 179246 atg-18 gaggugACGAU-GUAGUACGg | :|| :||||||| ucuuugUAUUAUUAUCAUGCa 2 15 117 137 [ce6:V:8629564-8629584:-] 0.5863 145 7 -12.78 -1.2504 MIMAT0000326 cel-miR-270 179246 atg-18 gaggugACGAU-GUAGUACGg | :|| :||||||| ucuuugUAUUAUUAUCAUGCa 2 15 182 202 [ce6:V:8629564-8629584:-] 0.5863 145 7 -12.78 -1.2465 MIMAT0005522 cel-miR-1021 179246 atg-18 ggCU-CCUAAAGU-GUA-CUAGAGUGAa || | | ||| ||| |||||||| caGAUGUACAUCACCAUCCAUCUCACUu 2 24 136 163 [ce6:V:8629538-8629565:-] 0.5863 156 7 -16.06 -0.9831 MIMAT0005522 cel-miR-1021 179246 atg-18 ggCU-CCUAAAGU-GUA-CUAGAGUGAa || | | ||| ||| |||||||| caGAUGUACAUCACCAUCCAUCUCACUu 2 24 201 228 [ce6:V:8629538-8629565:-] 0.5863 156 7 -16.06 -0.9733 MIMAT0006586 cel-miR-1819 179246 atg-18 agGUAGUUCGAGUUAGUAAGGu ::|:| :|: |||||||: auUGUUAUCUUUUAUCAUUCUu 2 21 460 481 [ce6:V:8629220-8629241:-] 0.4854 140 0 -11.73 -0.2365 MIMAT0006586 cel-miR-1819 179246 atg-18 agguAGUUCGAGUUAGUAAGgu |: :|| : |||||| auacUUUGGCAUUCUCAUUCga 3 19 413 434 [ce6:V:8629267-8629288:-] 0.5495 126 0 -8.40 -0.1149 MIMAT0006586 cel-miR-1819 179246 atg-18 agGUAGUUCGAGUUAGUAAGGu ::|:| :|: |||||||: auUGUUAUCUUUUAUCAUUCUu 2 21 525 546 [ce6:V:8629220-8629241:-] 0.4854 140 0 -11.73 -0.3231 MIMAT0006586 cel-miR-1819 179246 atg-18 agguAGUUCGAGUUAGUAAGgu |: :|| : |||||| auacUUUGGCAUUCUCAUUCga 3 19 478 499 [ce6:V:8629267-8629288:-] 0.5495 126 0 -8.40 -0.1147 MIMAT0006775 cel-miR-1833 179246 atg-18 cgugugaauaaagcguUCGGAGc |||||| ucuucaugucccaagcAGCCUCa 2 8 21 43 [ce6:V:8629658-8629680:-] 0.5863 120 6 -13.67 -0.1301 MIMAT0006775 cel-miR-1833 179246 atg-18 cgugugaauaaagcguUCGGAGc |||||| ucuucaugucccaagcAGCCUCa 2 8 86 108 [ce6:V:8629658-8629680:-] 0.5863 120 6 -13.67 -0.1270 MIMAT0011428 cel-miR-2208a* 179246 atg-18 acuucauauggucUUUGACGUa |||:|||| ucauucuuuaauuAAAUUGCAu 2 10 474 495 [ce6:V:8629206-8629227:-] 0.4854 129 0 -8.28 -0.1296 MIMAT0011430 cel-miR-2208b-3p 179246 atg-18 acuucACAUGGUUUUAG-ACGUa ||||::| ||| |||| aucuuUGUAUUAUUAUCAUGCAg 2 18 116 138 [ce6:V:8629563-8629585:-] 0.5863 125 0 -13.19 -1.1016 MIMAT0011430 cel-miR-2208b-3p 179246 atg-18 acuucACAUGGUUUUAG-ACGUa ||||::| ||| |||| aucuuUGUAUUAUUAUCAUGCAg 2 18 181 203 [ce6:V:8629563-8629585:-] 0.5863 125 0 -13.19 -1.0939 MIMAT0011446 cel-miR-2215 179246 atg-18 uuuguugugcgcgauGCUAAGa |||||| auuuuauaaucacauCGAUUCa 2 8 439 460 [ce6:V:8629241-8629262:-] 0.5175 120 6 -9.79 -0.2526 MIMAT0011446 cel-miR-2215 179246 atg-18 uuuguugugcgcgauGCUAAGa |||||| auuuuauaaucacauCGAUUCa 2 8 504 525 [ce6:V:8629241-8629262:-] 0.5175 120 6 -9.79 -0.2293 MIMAT0011454 cel-miR-2209b 179246 atg-18 acUUCGUGU--UGGCGAGUAGAGa | |:||| ||| : |||||| agAUGUACAUCACCAUCCAUCUCa 2 21 137 160 [ce6:V:8629541-8629564:-] 0.5863 131 6 -17.07 -0.1583 MIMAT0011454 cel-miR-2209b 179246 atg-18 acUUCGUGU--UGGCGAGUAGAGa | |:||| ||| : |||||| agAUGUACAUCACCAUCCAUCUCa 2 21 202 225 [ce6:V:8629541-8629564:-] 0.5863 131 6 -17.07 -0.1534 MIMAT0011462 cel-miR-2220 179246 atg-18 gacaUUCAG-GUGUUUGUUAAcu | ||: : :|||||||| auucACGUUAUUUAAACAAUUuu 3 19 278 300 [ce6:V:8629401-8629423:-] 0.4709 133 0 -8.44 -0.1063 MIMAT0011462 cel-miR-2220 179246 atg-18 gacaUUCAG-GUGUUUGUUAAcu | ||: : :|||||||| auucACGUUAUUUAAACAAUUuu 3 19 343 365 [ce6:V:8629401-8629423:-] 0.4709 133 0 -8.44 -0.1035 MIMAT0014446 cel-miR-2953-5p 179246 atg-18 uaAAAGUGCUUGUGAAGACAu | |||: || |:|||||| uuUCUCAUCAA-AUUUCUGUa 2 20 391 410 [ce6:V:8629291-8629310:-] 0.5102 145 6 -12.62 -0.2389 MIMAT0014446 cel-miR-2953-5p 179246 atg-18 uaaAAG-UGCUUGU-GAAG-ACAu ||| |||| || |||| ||| ucaUUCAACGAUCAUCUUCAUGUc 2 19 7 30 [ce6:V:8629671-8629694:-] 0.5863 128 0 -14.30 -1.0278 MIMAT0014446 cel-miR-2953-5p 179246 atg-18 uaAAAGUGCUUGUGAAGACAu | |||: || |:|||||| uuUCUCAUCAA-AUUUCUGUa 2 20 456 475 [ce6:V:8629291-8629310:-] 0.5102 145 6 -12.62 -0.2325 MIMAT0014446 cel-miR-2953-5p 179246 atg-18 uaaAAG-UGCUUGU-GAAG-ACAu ||| |||| || |||| ||| ucaUUCAACGAUCAUCUUCAUGUc 2 19 72 95 [ce6:V:8629671-8629694:-] 0.5863 128 0 -14.30 -0.5379 MIMAT0000030 cel-miR-58 179246 atg-18 uaacggcaUGACUUGCUAG-AGu |:| ||||||| || uucaauucAUUCAACGAUCAUCu 2 15 1 23 [ce6:V:8629678-8629700:-] 0.5863 122 0 -10.81 -0.8356 MIMAT0000030 cel-miR-58 179246 atg-18 uaacggcaUGACUUGCUAG-AGu |:| ||||||| || uucaauucAUUCAACGAUCAUCu 2 15 66 88 [ce6:V:8629678-8629700:-] 0.5863 122 0 -10.81 -0.7361 MIMAT0000038 cel-miR-66 179246 atg-18 agUGUAGGG---AUUAGUCACA-GUAc | ||:|: ||:| ||||| ||| cgAAAUUCUGAAUAGUGAGUGUGCAUa 2 22 247 273 [ce6:V:8629428-8629454:-] 0.4823 124 0 -13.08 -0.6993 MIMAT0000038 cel-miR-66 179246 atg-18 agUGUAGGG---AUUAGUCACA-GUAc | ||:|: ||:| ||||| ||| cgAAAUUCUGAAUAGUGAGUGUGCAUa 2 22 312 338 [ce6:V:8629428-8629454:-] 0.4823 124 0 -13.08 -0.6895 MIMAT0000042 cel-miR-70 179246 atg-18 uaCCUUUGUGGUUGCUGC-AUAAu | | ||:::| : ||| |||| guGCAUACGUUAUUCACGUUAUUu 2 22 267 290 [ce6:V:8629411-8629434:-] 0.4766 121 0 -9.72 -0.9732 MIMAT0000042 cel-miR-70 179246 atg-18 uaCCUUUGUGGUUGCUGC-AUAAu | | ||:::| : ||| |||| guGCAUACGUUAUUCACGUUAUUu 2 22 332 355 [ce6:V:8629411-8629434:-] 0.4766 121 0 -9.72 -0.9651 MIMAT0000043 cel-miR-71 179246 atg-18 agugauggguacAGAAAGu |||||| ucuucuucugauUCUUUCu 2 8 74 92 [ce6:V:8629609-8629627:-] 0.5863 120 6 -8.27 -0.1081 MIMAT0000043 cel-miR-71 179246 atg-18 agugauggguacAGAAAGu |||||| ucuucuucugauUCUUUCu 2 8 139 157 [ce6:V:8629609-8629627:-] 0.5863 120 6 -8.27 -0.1046 MIMAT0000049 cel-miR-77 179246 atg-18 accUGUC-GAUACCGGACUACUu |::| | || |||||||| aauAUGGACGAU--CCUGAUGAc 2 20 15 35 [ce6:V:8629731-8629751:-] 0.5863 147 7 -19.17 -0.6500 MIMAT0000058 cel-miR-85 179246 atg-18 cgugcUGAAAAGUU--UAUGAAACau |:|| | | |||||||| aucaaAUUUCUGUAUUAUACUUUGgc 3 20 397 422 [ce6:V:8629279-8629304:-] 0.5102 134 0 -9.91 -0.1304 MIMAT0000058 cel-miR-85 179246 atg-18 cgugcUGAAAAGUUUAUGAAACAu |:||||| | |||||| gucucAUUUUUCCA--UCUUUGUa 2 20 103 124 [ce6:V:8629577-8629598:-] 0.5863 128 6 -12.18 -0.2476 MIMAT0000058 cel-miR-85 179246 atg-18 cgugcUGAAAAGUU--UAUGAAACau |:|| | | |||||||| aucaaAUUUCUGUAUUAUACUUUGgc 3 20 462 487 [ce6:V:8629279-8629304:-] 0.5102 134 0 -9.91 -0.1223 MIMAT0000058 cel-miR-85 179246 atg-18 cgugcUGAAAAGUUUAUGAAACAu |:||||| | |||||| gucucAUUUUUCCA--UCUUUGUa 2 20 168 189 [ce6:V:8629577-8629598:-] 0.5863 128 6 -12.18 -0.2405 MIMAT0000284 cel-miR-229 179246 atg-18 gcuaccuuuucUAUUGGUCACA-GUAa |||:: ||||| ||| cgaaauucugaAUAGUGAGUGUGCAUa 2 16 247 273 [ce6:V:8629428-8629454:-] 0.4823 123 0 -12.57 -0.6918 MIMAT0000284 cel-miR-229 179246 atg-18 gcuaccuuuucUAUUGGUCACA-GUAa |||:: ||||| ||| cgaaauucugaAUAGUGAGUGUGCAUa 2 16 312 338 [ce6:V:8629428-8629454:-] 0.4823 123 0 -12.57 -0.6820 MIMAT0000305 cel-miR-249 179246 atg-18 ccguugcGAGUUUUCAGGACAcu ||: | |||||| auucuuuCUUUCUAUUCCUGUcu 3 17 84 106 [ce6:V:8629595-8629617:-] 0.5863 124 0 -8.75 -0.1457 MIMAT0000305 cel-miR-249 179246 atg-18 ccguugcGAGUUUUCAGGACAcu ||: | |||||| auucuuuCUUUCUAUUCCUGUcu 3 17 149 171 [ce6:V:8629595-8629617:-] 0.5863 124 0 -8.75 -0.1412 MIMAT0004216 cel-miR-255 179246 atg-18 gacauuUUUUAGAGAAGU-CAAa |||| |||||| ||| agccucAAAA--UCUUCAUGUUc 2 17 37 57 [ce6:V:8629644-8629664:-] 0.5863 121 0 -7.88 -0.9261 MIMAT0004216 cel-miR-255 179246 atg-18 gacauuUUUUAGAGAAGU-CAAa |||| |||||| ||| agccucAAAA--UCUUCAUGUUc 2 17 102 122 [ce6:V:8629644-8629664:-] 0.5863 121 0 -7.88 -0.9058 MIMAT0000697 cel-miR-355 179246 atg-18 guaucgaguccgauUUUGUUu |||||| uauucacguuauuuAAACAAu 2 8 277 297 [ce6:V:8629404-8629424:-] 0.4709 120 6 -8.28 -0.1477 MIMAT0000697 cel-miR-355 179246 atg-18 guaucgaguccgauUUUGUUu |||||| uauucacguuauuuAAACAAu 2 8 342 362 [ce6:V:8629404-8629424:-] 0.4709 120 6 -8.28 -0.1439 MIMAT0004221 cel-miR-786 179246 atg-18 uaacuUGUAGUAAG-UCCCGUAAu ::||:|| | |||||| uuucuGUAUUAUACUUUGGCAUUc 2 19 403 426 [ce6:V:8629275-8629298:-] 0.5495 121 6 -9.81 -0.1178 MIMAT0004221 cel-miR-786 179246 atg-18 uaacuUGUAGUAAG-UCCCGUAAu ::||:|| | |||||| uuucuGUAUUAUACUUUGGCAUUc 2 19 468 491 [ce6:V:8629275-8629298:-] 0.5495 121 6 -9.81 -0.1086

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 atg-18; CELE_F41E6.13; F41E6.13 cel-miR-231 163 189 -AAGACGGACAAC-UAGUGCUCGAAU |||| |:|||| ||||| |||| UUUCUUCUUGUUCUAUCACAUGCUUC atg-18; CELE_F41E6.13; F41E6.13 cel-miR-243 361 382 CUAUAGGGCGGCGCUAGCA--UGGC- |||||| |||| |:|| ----CCCCGCCUUU-UCGUCUAUCGA atg-18; CELE_F41E6.13; F41E6.13 cel-miR-264 356 369 GUAUUGUUGUUGGUGGGCGG- |||| |||||| --------AAACCCCCCGCCU atg-18; CELE_F41E6.13; F41E6.13 cel-miR-265 181 203 -UAUGGU--GGGAAGGAGGGAGU ||:|: ||| |::||||| CAUGCUUCUCCCAUUUUCCCUG- atg-18; CELE_F41E6.13; F41E6.13 cel-miR-268 65 107 -UGGUUU---GACGAAGAUUAAGA-------------ACGG ||| || |||||:||||| ||:| AACCUCGUCUCUUCUUCUGAUUCUUUCUUUCUAUUCCUGUCU atg-18; CELE_F41E6.13; F41E6.13 cel-miR-270 112 138 GAGGUG---ACGAU---GUAGUACGG ||||: ||: :||||||| UUCCAUCUUUGUAUUAUUAUCAUGCA atg-18; CELE_F41E6.13; F41E6.13 cel-miR-48 14 45 AGC--GUAGAUG-AC-----UCGGAUGGAGU- || ||||| || ||| :||||| ACGAUCAUCUUCAUGUCCCAAGCA-GCCUCAA atg-18; CELE_F41E6.13; F41E6.13 cel-miR-60 254 275 -ACUUGAUCUUUUACACGUAUUAU |||| ||| :|:|||||||| CUGAA-UAGUGAGUGUGCAUAC-- atg-18; CELE_F41E6.13; F41E6.13 cel-miR-231 164 188 AAGACGGACAA-CUAGUGCUCGAAu |||| |:|||| ||||| |||| TTCTTCTTGTTCTATCACATGCTTc atg-18; CELE_F41E6.13; F41E6.13 cel-miR-243 357 385 cuauaGGGCG-----GC-GCUAGCAUGGc ||||| || | |||| ||| aacccCCCGCCTTTTCGTCTATCGAACCc atg-18; CELE_F41E6.13; F41E6.13 cel-miR-264 348 367 GUAUUGUUGUUGGUGGGCGG || | | |||| |||||| CACCTCTAAAACCCCCCGCC atg-18; CELE_F41E6.13; F41E6.13 cel-miR-265 182 203 UAUG--GUGGGAAGGAGGGAgu ||:| | ||| |::||||| ATGCTTCTCCCATTTTCCCTgt atg-18; CELE_F41E6.13; F41E6.13 cel-miR-268 69 92 ugguuuGACGAAGAUUAAGAACGg || |||||:|||||| | tcgtctCTTCTTCTGATTCTTTCt atg-18; CELE_F41E6.13; F41E6.13 cel-miR-270 112 137 gAGGU---GAC--GAU-GUAGUACGg |||| :|| :|| :||||||| tTCCATCTTTGTATTATTATCATGCa atg-18; CELE_F41E6.13; F41E6.13 cel-miR-60 255 276 ACUUGAUCUUUUACACGUAUuau |||| ||| :|:|||||||| TGAA-TAGTGAGTGTGCATAcgt atg-18; CELE_F41E6.13; F41E6.13 cel-miR-270 130 137 -----------------GAGGUG---ACGAU---GUAGUACGG :||||: ||: :||||||| CUAUUCCUGUCUCAUUUUUCCAUCUUUGUAUUAUUAUCAUGCA

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score atg-18 RAID00579573 cel-miR-77-3p miRNA MIMAT0000049 atg-18 mRNA 179246 CLIP-seq//Prediction 0.6308 atg-18 RAID01178788 cel-miR-70-3p miRNA MIMAT0000042 atg-18 mRNA 179246 Prediction 0.1828 atg-18 RAID01207399 cel-miR-85-3p miRNA MIMAT0000058 atg-18 mRNA 179246 CLIP-seq//Prediction 0.6308 atg-18 RAID02084070 cel-miR-58a-3p miRNA MIMAT0000030 atg-18 mRNA 179246 CLIP-seq//Prediction 0.6308 atg-18 RAID02210232 cel-miR-229-5p miRNA MIMAT0000284 atg-18 mRNA 179246 Prediction 0.1828 atg-18 RAID02262588 cel-miR-66-5p miRNA MIMAT0000038 atg-18 mRNA 179246 Prediction 0.1828 atg-18 RAID02267305 cel-mir-2953 miRNA MI0013633 atg-18 mRNA 179246 Prediction 0.1828 atg-18 RAID02811322 cel-miR-786-3p miRNA MIMAT0004221 atg-18 mRNA 179246 CLIP-seq//Prediction 0.6308 atg-18 RAID02904040 cel-miR-249-3p miRNA MIMAT0000305 atg-18 mRNA 179246 Prediction 0.1828 atg-18 RAID02982847 cel-miR-355-5p miRNA MIMAT0000697 atg-18 mRNA 179246 Prediction 0.1828 atg-18 RAID03057775 cel-miR-255-3p miRNA MIMAT0004216 atg-18 mRNA 179246 Prediction 0.1828 atg-18 RAID03241552 cel-miR-357-3p miRNA MIMAT0000699 atg-18 mRNA 179246 Prediction 0.1828 atg-18 RAID03555810 cel-miR-71-5p miRNA MIMAT0000043 atg-18 mRNA 179246 Prediction 0.1828