DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015095 cel-miR-42* 173602 mnat-1 gaaguggcuuuuucguuuGUGGGUg |||||| aauuuugugcucuuuuucCACCCAu 2 8 483 507 [ce6:II:2473602-2473626:-] 0.4804 120 6 -12.82 -0.1167 MIMAT0015095 cel-miR-42* 173602 mnat-1 gaaguggcuuuuucguuuGUGGGUg |||||| aauuuugugcucuuuuucCACCCAu 2 8 483 507 [ce6:II:2473602-2473626:-] 0.4804 120 6 -12.82 -0.1179 MIMAT0015119 cel-miR-247* 173602 mnat-1 ccaUUAAUCUUUG-AAAAGAGAu |||| : | |||||||| cuaAAUUUCGUCCAUUUUCUCUc 2 20 224 246 [ce6:II:2473863-2473885:-] 0.5012 150 7 -8.66 -0.9993 MIMAT0015119 cel-miR-247* 173602 mnat-1 ccAUUAAUCUUUG-AAAAGAGAu || || :: | ||||||| ccUAUUUUUGGCCAGUUUCUCUc 2 21 459 481 [ce6:II:2473628-2473650:-] 0.4804 143 7 -7.90 -0.5010 MIMAT0015119 cel-miR-247* 173602 mnat-1 ccaUUAAUCUUUG-AAAAGAGAu |||| : | |||||||| cuaAAUUUCGUCCAUUUUCUCUc 2 20 224 246 [ce6:II:2473863-2473885:-] 0.5012 150 7 -8.66 -0.9997 MIMAT0015119 cel-miR-247* 173602 mnat-1 ccAUUAAUCUUUG-AAAAGAGAu || || :: | ||||||| ccUAUUUUUGGCCAGUUUCUCUc 2 21 459 481 [ce6:II:2473628-2473650:-] 0.4804 143 7 -7.90 -0.5015 MIMAT0000321 cel-miR-265 173602 mnat-1 uaugguGGGAAGGAGGGAgu :::||:|||||| uuaaguUUUUUUCUCCCUaa 3 15 295 314 [ce6:II:2473795-2473814:-] 0.5012 134 0 -16.21 -0.3490 MIMAT0000321 cel-miR-265 173602 mnat-1 uaugguGGGAAGGAGGGAgu :::||:|||||| uuaaguUUUUUUCUCCCUaa 3 15 295 314 [ce6:II:2473795-2473814:-] 0.5012 134 0 -16.21 -0.3494 MIMAT0000698 cel-miR-356 173602 mnat-1 acuAAACAAG--CGCAACGAGUu |||| || : ||||||| aauUUUGGUCAUUUUUUGCUCAu 2 19 74 96 [ce6:II:2474013-2474035:-] 0.4982 149 7 -9.61 -1.0903 MIMAT0000698 cel-miR-356 173602 mnat-1 acUAAACAAG---CGCAACGAGUu |||| | | : ||||||| uaAUUUUUACCAUUUUUUGCUCAu 2 20 312 335 [ce6:II:2473774-2473797:-] 0.5012 142 7 -7.75 -1.0780 MIMAT0000698 cel-miR-356 173602 mnat-1 acUAAACA-AGCGC----AACGAGUu |||| | | || ||||||| gcAUUUUUCCCCCGAUUUUUGCUCAu 2 20 342 367 [ce6:II:2473742-2473767:-] 0.5012 141 7 -10.34 -0.7490 MIMAT0000698 cel-miR-356 173602 mnat-1 acuaaacaagcgcAACGAGUu ||||||| uuccguccauuuuUUGCUCAu 2 9 411 431 [ce6:II:2473678-2473698:-] 0.4804 140 7 -10.04 -0.8789 MIMAT0000698 cel-miR-356 173602 mnat-1 acuAAACAAG--CGCAACGAGUu |||| || : ||||||| aauUUUGGUCAUUUUUUGCUCAu 2 19 74 96 [ce6:II:2474013-2474035:-] 0.4982 149 7 -9.61 -1.0906 MIMAT0000698 cel-miR-356 173602 mnat-1 acUAAACAAG---CGCAACGAGUu |||| | | : ||||||| uaAUUUUUACCAUUUUUUGCUCAu 2 20 312 335 [ce6:II:2473774-2473797:-] 0.5012 142 7 -7.75 -1.0783 MIMAT0000698 cel-miR-356 173602 mnat-1 acUAAACA-AGCGC----AACGAGUu |||| | | || ||||||| gcAUUUUUCCCCCGAUUUUUGCUCAu 2 20 342 367 [ce6:II:2473742-2473767:-] 0.5012 141 7 -10.34 -0.7495 MIMAT0000698 cel-miR-356 173602 mnat-1 acuaaacaagcgcAACGAGUu ||||||| uuccguccauuuuUUGCUCAu 2 9 411 431 [ce6:II:2473678-2473698:-] 0.4804 140 7 -10.04 -0.8793 MIMAT0015240 cel-miR-788* 173602 mnat-1 gcUAAGAUUAGGU-AAAGg |||:| : ||| |||| cuAUUUUUGGCCAGUUUCu 2 17 460 478 [ce6:II:2473631-2473649:-] 0.4804 120 0 -8.53 -0.4894 MIMAT0015240 cel-miR-788* 173602 mnat-1 gcUAAGAUUAGGU-AAAGg |||:| : ||| |||| cuAUUUUUGGCCAGUUUCu 2 17 460 478 [ce6:II:2473631-2473649:-] 0.4804 120 0 -8.53 -0.4898 MIMAT0005031 cel-miR-1018 173602 mnat-1 gacauuCAGGUUACUAGAGAGa |||| || |||||| aauuucGUCC-AUUUUCUCUCa 2 17 227 247 [ce6:II:2473862-2473882:-] 0.5012 126 6 -15.50 -0.2045 MIMAT0005031 cel-miR-1018 173602 mnat-1 gacauuCAGGUUACUAGAGAGa |||| || |||||| aauuucGUCC-AUUUUCUCUCa 2 17 227 247 [ce6:II:2473862-2473882:-] 0.5012 126 6 -15.50 -0.2048 MIMAT0015267 cel-miR-1829a* 173602 mnat-1 auguuuguuaaucuucAGGGGAa |||||| auuuucucucaauuuuUCCCCUa 2 8 237 259 [ce6:II:2473850-2473872:-] 0.5012 120 6 -12.67 -0.2560 MIMAT0015267 cel-miR-1829a* 173602 mnat-1 auguuuguuaaucuucAGGGGAa |||||| ucauuugagccuaauuUCCCCUa 2 8 364 386 [ce6:II:2473723-2473745:-] 0.5012 120 6 -9.53 -0.1185 MIMAT0015267 cel-miR-1829a* 173602 mnat-1 auguuuguuaaucuucAGGGGAa |||||| auuuucucucaauuuuUCCCCUa 2 8 237 259 [ce6:II:2473850-2473872:-] 0.5012 120 6 -12.67 -0.2563 MIMAT0015267 cel-miR-1829a* 173602 mnat-1 auguuuguuaaucuucAGGGGAa |||||| ucauuugagccuaauuUCCCCUa 2 8 364 386 [ce6:II:2473723-2473745:-] 0.5012 120 6 -9.53 -0.1187 MIMAT0011458 cel-miR-2218b* 173602 mnat-1 agAGUGAUGUUUGAUGUUUAAa || : |: :|||||||| uuUCCUCAUUUUUUACAAAUUa 2 21 552 573 [ce6:II:2473536-2473557:-] 0.5304 148 7 -13.82 -1.3190 MIMAT0011458 cel-miR-2218b* 173602 mnat-1 agAGUGAUGUUUGAUGUUUAAa || : |: :|||||||| uuUCCUCAUUUUUUACAAAUUa 2 21 552 573 [ce6:II:2473536-2473557:-] 0.5304 148 7 -13.82 -1.2588 MIMAT0000060 cel-miR-87 173602 mnat-1 cguguGGACUUUGAAACGAGUg || :| :|||||||| uuuucCCCCGAUUUUUGCUCAu 2 18 346 367 [ce6:II:2473742-2473763:-] 0.5012 153 7 -15.86 -0.7379 MIMAT0000060 cel-miR-87 173602 mnat-1 cguGUGGACUUUGAAACGAGUg :||| | :|||||||| uuuUACC--AUUUUUUGCUCAu 2 20 316 335 [ce6:II:2473774-2473793:-] 0.5012 148 7 -15.87 -1.0805 MIMAT0000060 cel-miR-87 173602 mnat-1 cguguggACUUUGAAACGAGUg | | :|||||||| auuuuggUCAUUUUUUGCUCAu 2 16 75 96 [ce6:II:2474013-2474034:-] 0.4982 147 7 -15.15 -1.0927 MIMAT0000060 cel-miR-87 173602 mnat-1 cguguggacuuuGAAACGAGUg :|||||||| uuuccguccauuUUUUGCUCAu 2 11 410 431 [ce6:II:2473678-2473699:-] 0.4804 146 7 -15.53 -0.8789 MIMAT0000060 cel-miR-87 173602 mnat-1 cguguGGACUUUGAAACGAGUg || :| :|||||||| uuuucCCCCGAUUUUUGCUCAu 2 18 346 367 [ce6:II:2473742-2473763:-] 0.5012 153 7 -15.86 -0.7384 MIMAT0000060 cel-miR-87 173602 mnat-1 cguGUGGACUUUGAAACGAGUg :||| | :|||||||| uuuUACC--AUUUUUUGCUCAu 2 20 316 335 [ce6:II:2473774-2473793:-] 0.5012 148 7 -15.87 -1.0808 MIMAT0000060 cel-miR-87 173602 mnat-1 cguguggACUUUGAAACGAGUg | | :|||||||| auuuuggUCAUUUUUUGCUCAu 2 16 75 96 [ce6:II:2474013-2474034:-] 0.4982 147 7 -15.15 -1.0930 MIMAT0000060 cel-miR-87 173602 mnat-1 cguguggacuuuGAAACGAGUg :|||||||| uuuccguccauuUUUUGCUCAu 2 11 410 431 [ce6:II:2473678-2473699:-] 0.4804 146 7 -15.53 -0.8793 MIMAT0000288 cel-miR-233 173602 mnat-1 ggcguguacgcguAACGAGUu ||||||| uuuuggucauuuuUUGCUCAu 2 9 76 96 [ce6:II:2474013-2474033:-] 0.4982 140 7 -12.30 -1.0879 MIMAT0000288 cel-miR-233 173602 mnat-1 ggcguguacgcguAACGAGUu ||||||| uuuuuaccauuuuUUGCUCAu 2 9 315 335 [ce6:II:2473774-2473794:-] 0.5012 140 7 -12.30 -1.0730 MIMAT0000288 cel-miR-233 173602 mnat-1 ggcguguacgcguAACGAGUu ||||||| uuucccccgauuuUUGCUCAu 2 9 347 367 [ce6:II:2473742-2473762:-] 0.5012 140 7 -12.30 -0.7490 MIMAT0000288 cel-miR-233 173602 mnat-1 ggcguguacgcguAACGAGUu ||||||| uuccguccauuuuUUGCUCAu 2 9 411 431 [ce6:II:2473678-2473698:-] 0.4804 140 7 -16.84 -0.8720 MIMAT0000288 cel-miR-233 173602 mnat-1 ggcguguacgcguAACGAGUu ||||||| uuuuggucauuuuUUGCUCAu 2 9 76 96 [ce6:II:2474013-2474033:-] 0.4982 140 7 -12.30 -1.0882 MIMAT0000288 cel-miR-233 173602 mnat-1 ggcguguacgcguAACGAGUu ||||||| uuuuuaccauuuuUUGCUCAu 2 9 315 335 [ce6:II:2473774-2473794:-] 0.5012 140 7 -12.30 -1.0733 MIMAT0000288 cel-miR-233 173602 mnat-1 ggcguguacgcguAACGAGUu ||||||| uuucccccgauuuUUGCUCAu 2 9 347 367 [ce6:II:2473742-2473762:-] 0.5012 140 7 -12.30 -0.7495 MIMAT0000288 cel-miR-233 173602 mnat-1 ggcguguacgcguAACGAGUu ||||||| uuccguccauuuuUUGCUCAu 2 9 411 431 [ce6:II:2473678-2473698:-] 0.4804 140 7 -16.84 -0.8725 MIMAT0000296 cel-miR-240 173602 mnat-1 ucgcuucUAAACCCCCGGUCAu |||| ||||||| uuucccuAUUU-UUGGCCAGUu 2 16 455 475 [ce6:II:2473634-2473654:-] 0.4804 145 7 -12.69 -1.0586 MIMAT0000296 cel-miR-240 173602 mnat-1 ucgcuucUAAACCCCCGGUCAu |||| ||||||| uuucccuAUUU-UUGGCCAGUu 2 16 455 475 [ce6:II:2473634-2473654:-] 0.4804 145 7 -12.69 -1.0589 MIMAT0000699 cel-miR-357 173602 mnat-1 ugAGGACGUUGCUGAC-CGUAAAu |:| ::|: ||| |||||| uuUUCGUUGAUUUCUGAGCAUUUu 2 22 22 45 [ce6:II:2474064-2474087:-] 0.5618 121 6 -12.49 -0.5704 MIMAT0000699 cel-miR-357 173602 mnat-1 ugAGGACGUUGCUGAC-CGUAAAu |:| ::|: ||| |||||| uuUUCGUUGAUUUCUGAGCAUUUu 2 22 22 45 [ce6:II:2474064-2474087:-] 0.5618 121 6 -12.49 -0.5709 MIMAT0000749 cel-lsy-6 173602 mnat-1 gcuuuacGCAGAGUAUGUUUu | |:|: |||||| uuuuccuCAUUUUUUACAAAu 2 15 551 571 [ce6:II:2473538-2473558:-] 0.5304 122 6 -7.58 -0.1815 MIMAT0000749 cel-lsy-6 173602 mnat-1 gcuuuacGCAGAGUAUGUUUu | |:|: |||||| uuuuccuCAUUUUUUACAAAu 2 15 551 571 [ce6:II:2473538-2473558:-] 0.5304 122 6 -7.58 -0.2636 MIMAT0004221 cel-miR-786 173602 mnat-1 uaacuuguAGUAAGUCC-CGUAAu |||||: || ||||| uuuuuugcUCAUUUUGGAGCAUUu 2 16 324 347 [ce6:II:2473762-2473785:-] 0.5012 127 0 -13.16 -0.5660 MIMAT0004221 cel-miR-786 173602 mnat-1 uaacuuguAGUAAGUCC-CGUAAu |||||: || ||||| uuuuuugcUCAUUUUGGAGCAUUu 2 16 324 347 [ce6:II:2473762-2473785:-] 0.5012 127 0 -13.16 -0.5665

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score mnat-1 RAID00657534 cel-miR-240-3p miRNA MIMAT0000296 mnat-1 mRNA 173602 Prediction 0.1828 mnat-1 RAID01158841 cel-miR-87-3p miRNA MIMAT0000060 mnat-1 mRNA 173602 Prediction 0.1828 mnat-1 RAID01970919 cel-lsy-6-3p miRNA MIMAT0000749 mnat-1 mRNA 173602 Prediction 0.1828 mnat-1 RAID02305230 cel-miR-233-3p miRNA MIMAT0000288 mnat-1 mRNA 173602 Prediction 0.1828 mnat-1 RAID03170005 cel-miR-786-3p miRNA MIMAT0004221 mnat-1 mRNA 173602 Prediction 0.1828 mnat-1 RAID03619207 cel-miR-357-3p miRNA MIMAT0000699 mnat-1 mRNA 173602 Prediction 0.1828