DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015102 cel-miR-60* 175709 K10D2.1 uaAAAUACCGUGAGAAGGUCAa ||||| : ||||||||| aaUUUAUUUUUAUCUUCCAGUa 2 21 4 25 [ce6:III:5195773-5195794:+] 0.4871 164 7 -16.03 -1.2077 MIMAT0015109 cel-miR-81* 175709 K10D2.1 agagUCUAGUGCCACUUUUGgc ||||: || |||||| gaagAGAUU-CG--GAAAACaa 3 19 345 363 [ce6:III:5196165-5196183:+] 0.5582 129 0 -11.56 -0.1585 MIMAT0015115 cel-miR-239b* 175709 K10D2.1 aaaaacgugugguguUUUCACg |||||| agcaugauuucaauuAAAGUGu 2 8 249 270 [ce6:III:5196018-5196039:+] 0.5582 120 6 -12.74 -0.1315 MIMAT0015118 cel-miR-244* 175709 K10D2.1 aggAAAUCGACUUUUCGU-CAu ||| | ||:||||| || uuaUUUUUCGGAGAAGCAUGUc 2 19 270 291 [ce6:III:5196039-5196060:+] 0.5582 126 0 -11.41 -0.3979 MIMAT0015119 cel-miR-247* 175709 K10D2.1 ccauuaaucuuuGAAAAGAGAu :|||||||| uuucccaccguuUUUUUCUCUa 2 11 98 119 [ce6:III:5195867-5195888:+] 0.4776 146 7 -10.66 -1.1351 MIMAT0000313 cel-miR-258 175709 K10D2.1 uuuuccuaagGAG-AGUUUUgg ||| |||||| aauuacccagCUCUUCAAAAaa 3 12 372 393 [ce6:III:5196235-5196256:+] 0.6094 126 0 -8.53 -0.1263 MIMAT0000324 cel-miR-268 175709 K10D2.1 ugguuUGACGAAGAUUAAGAACGg |:|| | |||||||||: aucuuAUUG-UGAUAAUUCUUGUa 2 20 506 528 [ce6:III:5196622-5196644:+] 0.5636 145 0 -17.90 -0.3101 MIMAT0015239 cel-miR-786* 175709 K10D2.1 caUUUAUGGGGUUG--ACUA-UAAGc ::||| :|: |: |||| |||| guGGAUAAUCUUAUUGUGAUAAUUCu 2 22 499 524 [ce6:III:5196615-5196640:+] 0.5636 120 0 -11.82 -0.6378 MIMAT0015241 cel-miR-797* 175709 K10D2.1 uaaagugucuuuGGUUACUUUu :|||||||| acucuguuuauuUCAAUGAAAa 2 11 24 45 [ce6:III:5196646-5196667:+] 0.5636 146 7 -11.29 -1.1856 MIMAT0005523 cel-miR-1022 175709 K10D2.1 cuACCGCAGGAUUGUU-ACUAGAa || | |:||| :|| ||||:| uaUGUCUUUCUAUUAAUUGAUUUa 2 22 28 51 [ce6:III:5195797-5195820:+] 0.4823 121 0 -10.50 -0.1131 MIMAT0006590 cel-miR-1823 175709 K10D2.1 aaUGAGGAUUUGUGAAGGUCAu |:|::|| |||||||| uuAUUUUUA---UCUUCCAGUa 2 21 7 25 [ce6:III:5195776-5195794:+] 0.4871 148 7 -19.62 -1.2061 MIMAT0006768 cel-miR-1828 175709 K10D2.1 ugauAGUGAAUUUACGAAGGUCa |:|:|| || ||||||| uaauUUAUUUUUAU-CUUCCAGu 2 20 3 24 [ce6:III:5195772-5195793:+] 0.4871 157 7 -16.60 -1.0715 MIMAT0006769 cel-miR-1829a 175709 K10D2.1 uuaUCUCUUUAAGGUU-ACCAAc ||| : ||| || ||||| cggAGAUCGUUUCGAAUUGGUUc 2 20 440 462 [ce6:III:5196556-5196578:+] 0.5636 123 0 -14.49 -0.2978 MIMAT0011427 cel-miR-2208a 175709 K10D2.1 ccuauagucuaagcccAUGUGAa |||||| aauucuaacuacaauuUACACUg 2 8 184 206 [ce6:III:5195953-5195975:+] 0.4129 120 6 -4.91 -0.1370 MIMAT0011429 cel-miR-2208b-5p 175709 K10D2.1 ccuauagucuaggcccAUGUGAa |||||| aauucuaacuacaauuUACACUg 2 8 184 206 [ce6:III:5195953-5195975:+] 0.4129 120 6 -7.49 -0.1384 MIMAT0011431 cel-miR-2209a* 175709 K10D2.1 cuuccucuucucaccAAUGUGAg ||||||| aauucuaacuacaauUUACACUg 2 9 184 206 [ce6:III:5195953-5195975:+] 0.4129 140 7 -6.57 -1.0283 MIMAT0011433 cel-miR-2209c* 175709 K10D2.1 uuuguucugcacgccAAUGUGAg ||||||| aauucuaacuacaauUUACACUg 2 9 184 206 [ce6:III:5195953-5195975:+] 0.4129 140 7 -5.87 -1.0283 MIMAT0011434 cel-miR-2209c 175709 K10D2.1 acaucacauuggccacCAGAAAa |||||| aucuuccaguauuuauGUCUUUc 2 8 15 37 [ce6:III:5195784-5195806:+] 0.4871 120 6 -5.50 -0.3574 MIMAT0011462 cel-miR-2220 175709 K10D2.1 gaCAU-UCAGGUGUUUGUUAAcu ||| || |::: |||||| ugGUAUAG-CUGU-UACAAUUua 3 21 147 167 [ce6:III:5195916-5195936:+] 0.4776 123 0 -6.84 -0.1689 MIMAT0000004 cel-miR-2 175709 K10D2.1 cguguaguuucGACCGACACUAu || :|||||| ----------uCUUAUUGUGAUa 2 13 1 13 [ce6:III:5196623-5196635:+] 0.5636 128 6 -10.77 -0.1359 MIMAT0000004 cel-miR-2 175709 K10D2.1 cguguaguUUCGACCGACACUAu || || :|||||| ugguggauAAUCUUAUUGUGAUa 2 16 497 519 [ce6:III:5196613-5196635:+] 0.5636 135 6 -11.23 -0.1776 MIMAT0000014 cel-miR-43 175709 K10D2.1 cgcugucguucauuUGACACUAu |:|||||| ----------ucuuAUUGUGAUa 2 10 1 13 [ce6:III:5196623-5196635:+] 0.5636 129 6 -10.21 -0.1359 MIMAT0000014 cel-miR-43 175709 K10D2.1 cgCUGUC-GUUCAUUUGACACUAu |:::| :|| |:|||||| cuGGUGGAUAAUCUUAUUGUGAUa 2 22 496 519 [ce6:III:5196612-5196635:+] 0.5636 132 6 -15.42 -0.1793 MIMAT0000030 cel-miR-58 175709 K10D2.1 uaacggCAUGACUUGCUAGAGu |||| ||||||||| uucaugGUAC--AACGAUCUCu 2 17 70 89 [ce6:III:5195839-5195858:+] 0.4776 157 7 -17.39 -0.7625 MIMAT0000043 cel-miR-71 175709 K10D2.1 agUGAUGGGUACAGAAAGu | ||:::||||||||| ccAGUAUUUAUGUCUUUCu 2 18 20 38 [ce6:III:5195789-5195807:+] 0.4823 165 7 -20.14 -1.2502 MIMAT0000048 cel-miR-76 175709 K10D2.1 aguuccGAAGUAGU-UGUUGCUu :||||| : ||||||| uguuucUUUCAUGGUACAACGAu 2 17 63 85 [ce6:III:5195832-5195854:+] 0.4776 155 7 -14.40 -0.5819 MIMAT0000051 cel-miR-79 175709 K10D2.1 ucgAAACCAUUGGAUCGA-AAUa ||| |::: ||||| ||| caaUUUACUGGUAUAGCUGUUAc 2 20 139 161 [ce6:III:5195908-5195930:+] 0.4776 123 0 -8.13 -1.0457 MIMAT0000058 cel-miR-85 175709 K10D2.1 cgugcUGAAAAGUUUAUGAAACAu | || |:: | ||| ||| gugauAAUUCUUGUAGACUCUGUu 2 20 8 31 [ce6:III:5196630-5196653:+] 0.5636 123 0 -8.04 -0.1962 MIMAT0000285 cel-miR-230 175709 K10D2.1 agaggaccagcgugUUGAUUAUg |||||||| ------------ggAACUAAUAa 2 10 1 11 [ce6:III:5194624-5194634:+] 0.5454 145 7 -6.76 -1.1291 MIMAT0000291 cel-miR-236 175709 K10D2.1 ucgcAGUAAUGGACUGUCAUAAu |: |||:|| ||||||| uuuaUUUUUAUCUUCCAGUAUUu 2 20 6 28 [ce6:III:5195775-5195797:+] 0.4871 163 7 -12.53 -0.9888 MIMAT0000306 cel-miR-250 175709 K10D2.1 acgguugucaACUGACACUAa | |:|||||| --------ucUUAUUGUGAUa 2 12 1 13 [ce6:III:5196623-5196635:+] 0.5636 131 6 -7.75 -0.1359 MIMAT0000306 cel-miR-250 175709 K10D2.1 acggUUGUCA-ACUGACACUAa :|:| | | |:|||||| ggugGAUAAUCUUAUUGUGAUa 2 18 498 519 [ce6:III:5196614-5196635:+] 0.5636 136 6 -10.79 -0.1776 MIMAT0000697 cel-miR-355 175709 K10D2.1 guaUCGAGUCCGAUUUUGUUu || |: || ||||||| aagAGAUUCGG--AAAACAAu 2 19 346 364 [ce6:III:5196166-5196184:+] 0.5582 147 7 -9.04 -0.7150 MIMAT0004227 cel-miR-792 175709 K10D2.1 agacuuucaacuucucUAAAGUu |||||| cuuguagacucuguuuAUUUCAa 2 8 17 39 [ce6:III:5196639-5196661:+] 0.5636 120 6 -5.76 -0.1437 MIMAT0004227 cel-miR-792 175709 K10D2.1 agAC-UUUCAACUUCU-CUAAAGUu || :|| || |: | ||||||| auUGUGAACUUCAGCAUGAUUUCAa 2 22 237 261 [ce6:III:5196006-5196030:+] 0.4856 155 7 -10.11 -1.1614 MIMAT0004232 cel-miR-797 175709 K10D2.1 agaagaguaacacuAACGACACUAu || :|||||| ------------ucUUAUUGUGAUa 2 12 1 13 [ce6:III:5196623-5196635:+] 0.5636 131 6 -13.56 -0.1346 MIMAT0004232 cel-miR-797 175709 K10D2.1 agaAGAGUAAC-ACU--AACGACACUAu ||| :| | | | || :|||||| uugUCUGGUGGAUAAUCUUAUUGUGAUa 2 23 492 519 [ce6:III:5196608-5196635:+] 0.5636 136 6 -14.92 -0.1810

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score K10D2.1 RAID00147760 cel-miR-82-3p miRNA MIMAT0000055 K10D2.1 mRNA 175709 Prediction 0.1828 K10D2.1 RAID00216834 cel-miR-236-3p miRNA MIMAT0000291 K10D2.1 mRNA 175709 Prediction 0.1828 K10D2.1 RAID00227073 cel-miR-58a-3p miRNA MIMAT0000030 K10D2.1 mRNA 175709 Prediction 0.2381 K10D2.1 RAID00419530 cel-miR-71-5p miRNA MIMAT0000043 K10D2.1 mRNA 175709 Prediction 0.1828 K10D2.1 RAID00959944 cel-miR-85-3p miRNA MIMAT0000058 K10D2.1 mRNA 175709 Prediction 0.1828 K10D2.1 RAID01771746 cel-miR-2-3p miRNA MIMAT0000004 K10D2.1 mRNA 175709 Prediction 0.1828 K10D2.1 RAID01777887 cel-miR-43-3p miRNA MIMAT0000014 K10D2.1 mRNA 175709 Prediction 0.1828 K10D2.1 RAID01946729 cel-miR-792-3p miRNA MIMAT0004227 K10D2.1 mRNA 175709 Prediction 0.1828 K10D2.1 RAID02305114 cel-miR-797-5p miRNA MIMAT0004232 K10D2.1 mRNA 175709 Prediction 0.1828 K10D2.1 RAID02355340 cel-miR-76-3p miRNA MIMAT0000048 K10D2.1 mRNA 175709 Prediction 0.1828 K10D2.1 RAID02669922 cel-miR-79-3p miRNA MIMAT0000051 K10D2.1 mRNA 175709 Prediction 0.1828 K10D2.1 RAID02875859 cel-miR-355-5p miRNA MIMAT0000697 K10D2.1 mRNA 175709 Prediction 0.1828 K10D2.1 RAID03092385 cel-miR-230-3p miRNA MIMAT0000285 K10D2.1 mRNA 175709 CLIP-seq//Prediction 0.6308 K10D2.1 RAID03304733 cel-miR-250-3p miRNA MIMAT0000306 K10D2.1 mRNA 175709 Prediction 0.1828