DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000317 cel-miR-262 172012 R12E2.1 uaGUCUUUUGUAGCUCUUUg ::|||| : |||| ||| ugUGGAAAUUUUCGAUAAAg 2 19 85 104 [ce6:I:4184773-4184792:+] 0.7913 130 0 -7.66 -0.1256 MIMAT0005032 cel-miR-1019 172012 R12E2.1 gaCCUUUCGUUACACCUUAAUGUc ||||| || |||||||| ccGGAAA-CA-----GAAUUACAu 2 23 188 205 [ce6:I:4184876-4184893:+] 0.6212 146 7 -10.95 -0.3092 MIMAT0006771 cel-miR-1829c 172012 R12E2.1 augUUGGUAGAACUU--AAAGCGAa ||:| | | ||| ||||| | ugaAAUC-UGUGGAAAUUUUCGAUa 2 21 78 101 [ce6:I:4184766-4184789:+] 0.7913 121 0 -9.37 -0.1777 MIMAT0011437 cel-miR-2211* 172012 R12E2.1 gcaGUCUACCUCUU-AUCUACCUcc |:| |||||:| | |||||| augCGGUUGGAGGAUUUGAUGGAca 3 22 45 69 [ce6:I:4184733-4184757:+] 0.7913 152 0 -24.54 -0.2711 MIMAT0000002 cel-lin-4 172012 R12E2.1 agugUGAACUCCAG-AGUCCCu | |||: ||| |||||| guggAGUUGGUGUCGUCAGGGu 2 18 156 177 [ce6:I:4184844-4184865:+] 0.7913 129 6 -20.08 -0.3887 MIMAT0000038 cel-miR-66 172012 R12E2.1 aguguagggAUUAGUCACA-GUAc |||| ||||| ||| gauguuaaaUAAUAAGUGUACAUa 2 15 241 264 [ce6:I:4184929-4184952:+] 0.4765 126 0 -9.37 -1.2933 MIMAT0000039 cel-miR-67 172012 R12E2.1 agaugagaaagauCCUCCAACAcu || |||||| guggagucggaguGGCGGUUGUug 3 12 9 32 [ce6:I:4184697-4184720:+] 0.7913 127 0 -12.55 -0.1423 MIMAT0000047 cel-miR-75 172012 R12E2.1 acuuCGGCCAACCAUCGAAAUu |::|| | ||||||| gguuGUUGGAGAGAAGCUUUAu 2 19 25 46 [ce6:I:4184713-4184734:+] 0.7913 150 7 -13.55 -0.9076 MIMAT0000051 cel-miR-79 172012 R12E2.1 ucgaAACCAUUGGAUCGAAAUa |||| |: ||||||| guugUUGG-AGAGAAGCUUUAu 2 19 26 46 [ce6:I:4184714-4184734:+] 0.7913 148 7 -12.82 -0.9010 MIMAT0000284 cel-miR-229 172012 R12E2.1 gcUACCUUUUCUAUUGGUCACA-GUAa ||| || ||||: ||||| ||| ugAUGUUAA--AUAAUAAGUGUACAUa 2 25 240 264 [ce6:I:4184928-4184952:+] 0.4765 133 0 -14.24 -1.2909

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 R12E2.1; CELE_R12E2.1 cel-lin-4 157 178 AGUGUGAACUCCAG-AGUCCCU : | |||: ||| |||||| -UGGAGUUGGUGUCGUCAGGGU R12E2.1; CELE_R12E2.1 cel-miR-229 112 173 -GCUACCUUU----------UCUAU-----------UGG-------------UCACAGUAA ||||||||: ||||: :|: :|||||:| UCGAUGGAAGACGCACUCGCAGAUGUUCUACCGACGGCUGGGCGGUGGAGUUGGUGUCGUC R12E2.1; CELE_R12E2.1 cel-miR-237 146 178 -UCGACAAGC--UCUUA-----AG-AGUCCCU :|||| || :||:| || |||||| CGGCUGGGCGGUGGAGUUGGUGUCGUCAGGGU R12E2.1; CELE_R12E2.1 cel-miR-254 22 51 GGAUGUCAGCG--CUUUCU---AA--ACGU- :|:||:|: ||:||| || |||: --GGCGGUUGUUGGAGAGAAGCUUUAUGCGG R12E2.1; CELE_R12E2.1 cel-miR-264 114 133 GUAUUGUUGUUG-GUGGGCGG | :| :|| |||:||| --GAUGGAAGACGCACUCGCA R12E2.1; CELE_R12E2.1 cel-miR-271 132 158 -UUACGAAAGGG----UGGGCCGCU- :|||:| || :|: ||||: AGAUGUUCUACCGACGGCUGGGCGGU R12E2.1; CELE_R12E2.1 cel-miR-357 184 228 -UGAGG---------------ACGU-----UGCUGACCGUAAAU :|||| |||| ||||| || ||||| UGCUCCGGAAACAGAAUUACAUGCAGUGAAACGAC-GGGAUUUAU R12E2.1; CELE_R12E2.1 cel-miR-37 125 161 -UGA-CGUUCACAAG-UGG----------GCCACU- ||| |||: ||||| ||| |||||: CACUCGCAGAUGUUCUACCGACGGCUGGGCGGUGGA R12E2.1; CELE_R12E2.1 cel-miR-38 125 161 -UGAG-GUCAAAAAGA-GG----------GCCACU- |||| ||| |||| || |||||: CACUCGCAGAUGUUCUACCGACGGCUGGGCGGUGGA R12E2.1; CELE_R12E2.1 cel-miR-392 104 120 AGUAGUGUGCACUAGCUACUAU |:||| |||||||: ----GAUACGA-AUCGAUGGA- R12E2.1; CELE_R12E2.1 cel-miR-40 146 169 AAUCGACUA--CAUGUGGGCCACU :||||: ||: | ::|||| -CGGCUGGGCGGUGGAGUUGGUGU R12E2.1; CELE_R12E2.1 cel-miR-48 127 156 -AGCGU-----AGA-------UGACUCGGAUGGAGU ||||| ||| :|||:|| CUCGCAGAUGUUCUACCGACGGCUGGGCG------- R12E2.1; CELE_R12E2.1 cel-miR-55 206 223 GAGUCGUCUUUGAAUAUGCCCAU |||: ||||| ||||| -GCAGU-GAAACG---ACGGGA- R12E2.1; CELE_R12E2.1 cel-miR-56 206 223 GAGUCGCCUUUGUAAUGCCCAU |||:| ||||: ||||| -GCAGUG-AAACG--ACGGGA- R12E2.1; CELE_R12E2.1 cel-miR-57 147 180 UGUGUGUCG-------AGCUAGAU--GUCCCAU- :| :|| |:|:| | ||||||: -GGCUGGGCGGUGGAGUUGGUGUCGUCAGGGUGG R12E2.1; CELE_R12E2.1 cel-miR-63 141 173 AAAGGUUGAGCGA-----------AGUCACAGUAU ||:|| ||| |::|||||:| --ACCGACG-GCUGGGCGGUGGAGUUGGUGUCGUC R12E2.1; CELE_R12E2.1 cel-miR-64 153 173 AAGCCAUUGCGAAGUCACAGUAU ||||:: |::|||||:| -GCGGUGGAG--UUGGUGUCGUC R12E2.1; CELE_R12E2.1 cel-miR-65 145 173 AAGCCAAUGCGA------AGUCACAGUAU ||| |: || |::|||||:| -ACGGCUGGGCGGUGGAGUUGGUGUCGUC R12E2.1; CELE_R12E2.1 cel-miR-66 152 173 AGUGUAGGGAUUAGUCACAGUAC :|: |:|::|||||:| -GGCGGUGG-AGUUGGUGUCGUC R12E2.1; CELE_R12E2.1 cel-miR-788 6 28 GACGUUUACCUUCAAUCU--UCGCCU ||:|||| || :|| :|||| ---GAAGUGGA-GUCGGAGUGGCGGU R12E2.1; CELE_R12E2.1 cel-miR-789 159 181 UGUUAACCACUG-GGUCCGUCCCU |:|||||| | :|||| || -GAGUUGGUGUCGUCAGGGUGGC- R12E2.1; CELE_R12E2.1 cel-miR-79 21 48 -UCGA----AACCAUUGGAUCGAAAUA- :|| |||| |: |||||||| UGGCGGUUGUUGG-AGAGAAGCUUUAUG R12E2.1; CELE_R12E2.1 cel-miR-795 126 145 UUCGAGCGACUAGUUAGAUGGAGU ||||| ||| |||||| --ACUCGCAGAUGU-UCUACCG-- R12E2.1; CELE_R12E2.1 cel-miR-797 71 91 AGAAGAGUAACACUAACGACACUAU ||:||| ||| |||||: ---ACUUAUU-UGAAAUCUGUGGA- R12E2.1; CELE_R12E2.1 cel-miR-799 161 183 GGUGAUCGAAAUAGUCCCAA-GU- :|:|: :||||||| || --GUUGGUGUCGUCAGGGUGGCAG R12E2.1; CELE_R12E2.1 cel-lin-4 156 177 agugUGAACUCCAG-AGUCCCu | |||: ||| |||||| gtggAGTTGGTGTCGTCAGGGt R12E2.1; CELE_R12E2.1 cel-miR-229 143 172 GCUACC--UUUUCUA--UUGGUCACAGUAa ||| || ::: |:| |::::|||||:| CGACGGCTGGGCGGTGGAGTTGGTGTCGTc R12E2.1; CELE_R12E2.1 cel-miR-237 147 177 uCGACAAGC--UCUUA-----AG-AGUCCCu |||| || :||:| || |||||| gGCTGGGCGGTGGAGTTGGTGTCGTCAGGGt R12E2.1; CELE_R12E2.1 cel-miR-254 44 64 ggAUGUCAGCGCUUUCUAAACgu |:|:|| :|:|:|||||| taTGCGGT--TGGAGGATTTGat R12E2.1; CELE_R12E2.1 cel-miR-264 113 132 guauugUUGUUGGUGGGCGg || | |||:||| cgatggAAGACGCACTCGCa R12E2.1; CELE_R12E2.1 cel-miR-271 130 151 uuaCGAAAGGGUGG--GCCGcu | | |:|:||| |||| gcaGATGTTCTACCGACGGCtg R12E2.1; CELE_R12E2.1 cel-miR-357 205 226 ugaggACGUUGCUGACCGUAAAU || |||||| || ||||| tgcagTGAAACGAC-GGGATTTA R12E2.1; CELE_R12E2.1 cel-miR-37 126 152 UGA-CGUUCACAAG-UGG--GCC-ACu ||| |||: ||||| ||| ||| || ACTCGCAGATGTTCTACCGACGGCTGg R12E2.1; CELE_R12E2.1 cel-miR-38 126 152 UGAG-GUCAAAAAGA-GG--GCC-ACu |||| ||| | |||| || ||| || ACTCGCAGATGTTCTACCGACGGCTGg R12E2.1; CELE_R12E2.1 cel-miR-392 100 120 aguagUGUGCACUAGCUACuau |:||| ||||||| taaagATACG-AATCGATGgaa R12E2.1; CELE_R12E2.1 cel-miR-40 127 152 aAUCGACUACAUG-UGG--GCC-ACu | || ||||| | ||| ||| || cTCGCAGATGTTCTACCGACGGCTGg R12E2.1; CELE_R12E2.1 cel-miR-48 122 146 aGCGUAGAUGACU-C-GGAUGGagu |||| : :| || | :||||| aCGCACTCGCAGATGTTCTACCgac R12E2.1; CELE_R12E2.1 cel-miR-55 201 223 gaGU-CGU--CUUUGAAUAUGCCCau || ||| ||||| ||||| taCATGCAGTGAAACG---ACGGGat R12E2.1; CELE_R12E2.1 cel-miR-56 205 223 gaGUCGCCUUUGUAAUGCCCau |||: |||||: ||||| tgCAGT-GAAACG--ACGGGat R12E2.1; CELE_R12E2.1 cel-miR-57 154 178 ugugugUCGAGC-UAGAUGUCCCAu ||:| | :|| |||||| cggtggAGTTGGTGTCGTCAGGGTg R12E2.1; CELE_R12E2.1 cel-miR-63 142 172 aaagGUUGA---GCGA----AGUCACAGUAu |::|| || | |::|||||:| ccgaCGGCTGGGCGGTGGAGTTGGTGTCGTc R12E2.1; CELE_R12E2.1 cel-miR-64 152 172 aaGCCAUUGCGAAGUCACAGUAu ||||:: | |::|||||:| ggCGGTGGAG--TTGGTGTCGTc R12E2.1; CELE_R12E2.1 cel-miR-65 152 172 aaGCCAAUGCGAAGUCACAGUAu |||| : | |::|||||:| ggCGGTGGAG--TTGGTGTCGTc R12E2.1; CELE_R12E2.1 cel-miR-66 150 172 aguguagggaUUAGUCACAGUAc |:|::|||||:| tgggcggtggAGTTGGTGTCGTc R12E2.1; CELE_R12E2.1 cel-miR-75 16 46 aCUUCG--GCCAAC-------CAUCGAAAUu |:||: |||||| | ||||||| cGGAGTGGCGGTTGTTGGAGAGAAGCTTTAt R12E2.1; CELE_R12E2.1 cel-miR-788 1 13 gacguuuaccuucaaUCUUCGCCU |||||:||| -----------tcggAGAAGTGGA R12E2.1; CELE_R12E2.1 cel-miR-788 21 44 gaCGUUUAC--CUUCAAUCUUCGccu ||:: || |:|| |||||| tgGCGGTTGTTGGAG--AGAAGCttt R12E2.1; CELE_R12E2.1 cel-miR-789 158 177 ugUUAACCACUGGGUCCGUCCCu |:|||||| | | ||||| ggAGTTGGTGTC---GTCAGGGt R12E2.1; CELE_R12E2.1 cel-miR-795 124 146 uucGAGCGACUAGUUAGAUGGagu ||||| ||| : |||||| gcaCTCGCAGAT-GTTCTACCgac R12E2.1; CELE_R12E2.1 cel-miR-797 68 91 agaaGAGUAACACUAACGACACuau ||:||| ||| ||||| cagaCTTATT-TGAAATCTGTGgaa R12E2.1; CELE_R12E2.1 cel-miR-799 159 180 ggugAUCGAAAUAGUCCCAagu |:|: | :||||||| gagtTGGTGTCGTCAGGGTggc R12E2.1; CELE_R12E2.1 cel-miR-75 39 46 ------ACUUCGGCCA-ACCA--------------UCGAAAUU ||:||:||| ||| ||||||| GAGAAGUGGAGUCGGAGUGGCGGUUGUUGGAGAGAAGCUUUAU R12E2.1; CELE_R12E2.1 cel-miR-79 39 46 ------------------UCGA----AACCAUUGGAUCGAAAUA :|| |||| |: |||||||| GAGAAGUGGAGUCGGAGUGGCGGUUGUUGG-AGAGAAGCUUUAUG

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score R12E2.1 RAID00670046 cel-miR-229-5p miRNA MIMAT0000284 R12E2.1 mRNA 172012 Prediction 0.1828 R12E2.1 RAID01971304 cel-miR-66-5p miRNA MIMAT0000038 R12E2.1 mRNA 172012 Prediction 0.1828 R12E2.1 RAID02727860 cel-miR-75-3p miRNA MIMAT0000047 R12E2.1 mRNA 172012 Prediction 0.1828 R12E2.1 RAID02847300 cel-miR-67-3p miRNA MIMAT0000039 R12E2.1 mRNA 172012 Prediction 0.1828 R12E2.1 RAID03301975 cel-lin-4-5p miRNA MIMAT0000002 R12E2.1 mRNA 172012 Prediction 0.1828 R12E2.1 RAID03314694 cel-miR-79-3p miRNA MIMAT0000051 R12E2.1 mRNA 172012 Prediction 0.2202