DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015095 cel-miR-42* 175849 T04C9.1 gaaGUGGCUUUUUCGUUUGUGGGUg | ||| : | || ||||||| ucaCCCCGCGCACACAUACACCCAa 2 23 274 298 [ce6:III:6005976-6006000:+] 0.5080 158 7 -19.14 -0.9796 MIMAT0015102 cel-miR-60* 175849 T04C9.1 uaAAAUACCGUGAGAAGGUCaa ||||| :| :|||||| acUUUAU-UUA--UUUCCAGau 3 21 34 52 [ce6:III:6005736-6005754:+] 0.5080 127 0 -9.24 -0.1590 MIMAT0015102 cel-miR-60* 175849 T04C9.1 uaAAAUACCGUGAGAAGGUCaa ||||| :| :|||||| acUUUAU-UUA--UUUCCAGau 3 21 34 52 [ce6:III:6005736-6005754:+] 0.5080 127 0 -9.24 -0.1963 MIMAT0015115 cel-miR-239b* 175849 T04C9.1 aaaAACGUGUGGUGUUUUCAcg | || |:: :|||||| cuaUGGCCAAUUUUAAAAGUua 3 20 478 499 [ce6:III:6006180-6006201:+] 0.4948 131 0 -8.00 -0.1830 MIMAT0015116 cel-miR-240* 175849 T04C9.1 guAAGAUCA--GAGUUUUAGGAGc ||:|| | ::|||||||: --UUUUAAUAAAAUGAAAUCCUUu 2 21 1 22 [ce6:III:6005703-6005724:+] 0.5080 135 0 -7.53 -0.1998 MIMAT0015119 cel-miR-247* 175849 T04C9.1 ccAUUAAUCUUU-----GAAAAGAGAu ||| |||| :|||||||| aaUAAAAUGAAAUCCUUUUUUUCUCUc 2 21 5 31 [ce6:III:6005707-6005733:+] 0.5080 147 7 -9.12 -1.3249 MIMAT0015119 cel-miR-247* 175849 T04C9.1 ccAUUAAUCUUUGA-----AAAGAGAu || || |:|:| ||||||| uuUAUUUCCAGAUUUUUUGUUUCUCUc 2 21 40 66 [ce6:III:6005742-6005768:+] 0.5080 143 7 -7.69 -0.7308 MIMAT0015119 cel-miR-247* 175849 T04C9.1 ccAUUAAUCUUU-----GAAAAGAGAu ||| |||| :|||||||| aaUAAAAUGAAAUCCUUUUUUUCUCUc 2 21 5 31 [ce6:III:6005707-6005733:+] 0.5080 147 7 -9.12 -1.2621 MIMAT0015119 cel-miR-247* 175849 T04C9.1 ccAUUAAUCUUUGA-----AAAGAGAu || || |:|:| ||||||| uuUAUUUCCAGAUUUUUUGUUUCUCUc 2 21 40 66 [ce6:III:6005742-6005768:+] 0.5080 143 7 -7.69 -0.7846 MIMAT0000309 cel-miR-253* 175849 T04C9.1 ccagucacaAUCACUCCACac ||| |||||| uucgaaaaaUAG-GAGGUGaa 3 13 573 592 [ce6:III:6006275-6006294:+] 0.4817 126 0 -12.95 -0.2193 MIMAT0000313 cel-miR-258 175849 T04C9.1 uuuuccuaagGAGAGUUUUGg ||:||||||| auuguuuugaCUUUCAAAACu 2 12 132 152 [ce6:III:6005834-6005854:+] 0.5080 151 7 -13.16 -0.9185 MIMAT0000695 cel-miR-353 175849 T04C9.1 uuauGGUUGUGUACC-GUUAAc |||| :|||| ||||| ucgcCCAAACUAUGGCCAAUUu 2 18 469 490 [ce6:III:6006171-6006192:+] 0.4948 129 0 -13.35 -1.0037 MIMAT0015241 cel-miR-797* 175849 T04C9.1 uaAAGUGUCUUUGGUUACUUUu ||:| | || ||||||| -uUUUA-AUAA---AAUGAAAu 2 21 1 17 [ce6:III:6005703-6005719:+] 0.5080 142 7 -4.46 -1.2825 MIMAT0015241 cel-miR-797* 175849 T04C9.1 uaAAGUGUCUUUGGUUACUUUu ||:| | || ||||||| -uUUUA-AUAA---AAUGAAAu 2 21 1 17 [ce6:III:6005703-6005719:+] 0.5080 142 7 -4.46 -1.1497 MIMAT0005031 cel-miR-1018 175849 T04C9.1 gacauucagguuacUAGAGAGa ||||||| cucucauuguuuccAUCUCUCu 2 9 62 83 [ce6:III:6005764-6005785:+] 0.5080 140 7 -16.36 -0.2789 MIMAT0005031 cel-miR-1018 175849 T04C9.1 gacauucagguuacuAGAGAGa |||||| augaaauccuuuuuuUCUCUCa 2 8 11 32 [ce6:III:6005713-6005734:+] 0.5080 120 6 -11.91 -0.6226 MIMAT0005031 cel-miR-1018 175849 T04C9.1 gacauucagguuacuAGAGAGa |||||| uccagauuuuuuguuUCUCUCa 2 8 46 67 [ce6:III:6005748-6005769:+] 0.5080 120 6 -12.23 -0.1777 MIMAT0005031 cel-miR-1018 175849 T04C9.1 gacauucagguuacUAGAGAGa ||||||| cucucauuguuuccAUCUCUCu 2 9 62 83 [ce6:III:6005764-6005785:+] 0.5080 140 7 -16.36 -0.3424 MIMAT0005031 cel-miR-1018 175849 T04C9.1 gacauucagguuacuAGAGAGa |||||| augaaauccuuuuuuUCUCUCa 2 8 11 32 [ce6:III:6005713-6005734:+] 0.5080 120 6 -11.91 -0.3448 MIMAT0005031 cel-miR-1018 175849 T04C9.1 gacauucagguuacuAGAGAGa |||||| uccagauuuuuuguuUCUCUCa 2 8 46 67 [ce6:III:6005748-6005769:+] 0.5080 120 6 -12.23 -0.2203 MIMAT0006590 cel-miR-1823 175849 T04C9.1 aaUGAGGAUUUGUGAAGGUCau ||| :|| :|:|||||| auACU-UUAUUUAUUUCCAGau 3 21 32 52 [ce6:III:6005734-6005754:+] 0.5080 138 0 -16.88 -0.1560 MIMAT0006590 cel-miR-1823 175849 T04C9.1 aaUGAGGAUUUGUGAAGGUCau ||| :|| :|:|||||| auACU-UUAUUUAUUUCCAGau 3 21 32 52 [ce6:III:6005734-6005754:+] 0.5080 138 0 -16.88 -0.1927 MIMAT0006768 cel-miR-1828 175849 T04C9.1 ugaUAGUGAAUUUACGAAGGUCa || :||| | :|||||| cucAUACUUUAUUUAUUUCCAGa 2 21 29 51 [ce6:III:6005731-6005753:+] 0.5080 140 6 -13.88 -0.3235 MIMAT0006768 cel-miR-1828 175849 T04C9.1 ugaUAGUGAAUUUACGAAGGUCa || :||| | :|||||| cucAUACUUUAUUUAUUUCCAGa 2 21 29 51 [ce6:III:6005731-6005753:+] 0.5080 140 6 -13.88 -0.3859 MIMAT0006771 cel-miR-1829c 175849 T04C9.1 augUUGGUAGAACUUAAAGCGAa ||:| |:|| |||| || ugaAAUCCUUUU---UUUCUCUc 2 21 12 31 [ce6:III:6005714-6005733:+] 0.5080 120 0 -4.49 -0.1525 MIMAT0011436 cel-miR-2210* 175849 T04C9.1 cacccaucucguuAGCUGAAAu |:|||||| agauucgauuguuUUGACUUUc 2 10 125 146 [ce6:III:6005827-6005848:+] 0.5080 129 6 -7.96 -0.1031 MIMAT0011444 cel-miR-2214 175849 T04C9.1 uugCGGCCAGUUCAACAAC-AGUUAc ||| ||: | || || ||||| cugGCCAGUUCACUUUGUGAUCAAUc 2 23 82 107 [ce6:III:6005784-6005809:+] 0.5080 130 0 -14.23 -0.5884 MIMAT0011444 cel-miR-2214 175849 T04C9.1 uugCGGCCAGUUCAACAAC-AGUUAc ||| ||: | || || ||||| cugGCCAGUUCACUUUGUGAUCAAUc 2 23 82 107 [ce6:III:6005784-6005809:+] 0.5080 130 0 -14.23 -0.5802 MIMAT0011446 cel-miR-2215 175849 T04C9.1 uuuGUUGUGCGCGAUGCU-AAGa |:| |||||:||||| ||| uuuCGA-ACGCGUUACGAGUUCu 2 20 389 410 [ce6:III:6006091-6006112:+] 0.5080 137 0 -24.97 -0.2294 MIMAT0011456 cel-miR-2218a* 175849 T04C9.1 auguuuGAUGUGAUAAGACCGGa :| ||: ||||||| cauuguUUCCAUCUCUCUGGCCa 2 18 66 88 [ce6:III:6005768-6005790:+] 0.5080 145 7 -13.94 -0.7868 MIMAT0011456 cel-miR-2218a* 175849 T04C9.1 auguuuGAUGUGAUAAGACCGGa :| ||: ||||||| cauuguUUCCAUCUCUCUGGCCa 2 18 66 88 [ce6:III:6005768-6005790:+] 0.5080 145 7 -13.94 -0.8380 MIMAT0014446 cel-miR-2953-5p 175849 T04C9.1 uaaAAGUGCUUGUGAAGACAu ||| : | : ||||||| agaUUCUUUAUUCCUUCUGUg 2 19 344 364 [ce6:III:6006046-6006066:+] 0.5080 150 7 -11.87 -0.2421 MIMAT0000045 cel-miR-73 175849 T04C9.1 ugacuuGACGGAUG-UAGAA-CGGu :| ||| | ||||| ||| auuauuUUUCCUCCAAUCUUAGCCu 2 18 503 527 [ce6:III:6006205-6006229:+] 0.4817 120 0 -12.94 -0.9055 MIMAT0000058 cel-miR-85 175849 T04C9.1 cgugcuGAAAAGUUUA-UGAAACAu || ||: | ||||||| aucucuCUGGCCAGUUCACUUUGUg 2 19 76 100 [ce6:III:6005778-6005802:+] 0.5080 145 7 -12.12 -0.2054 MIMAT0000058 cel-miR-85 175849 T04C9.1 cgugcuGAAAAGUUUA-UGAAACAu || ||: | ||||||| aucucuCUGGCCAGUUCACUUUGUg 2 19 76 100 [ce6:III:6005778-6005802:+] 0.5080 145 7 -12.12 -0.2582 MIMAT0000059 cel-miR-86 175849 T04C9.1 cuGACACCGUUUCGUAAGUGAAu || |||| | :||||||| cuCUCUGGCCA---GUUCACUUu 2 22 78 97 [ce6:III:6005780-6005799:+] 0.5080 153 7 -15.50 -0.2164 MIMAT0000059 cel-miR-86 175849 T04C9.1 cuGACACCGUUUCGUAAGUGAAu || |||| | :||||||| cuCUCUGGCCA---GUUCACUUu 2 22 78 97 [ce6:III:6005780-6005799:+] 0.5080 153 7 -15.50 -0.2972 MIMAT0000296 cel-miR-240 175849 T04C9.1 ucgcuucuaaacccCCGGUCAu ||||||| guuuccaucucucuGGCCAGUu 2 9 70 91 [ce6:III:6005772-6005793:+] 0.5080 140 7 -12.68 -0.7413 MIMAT0000296 cel-miR-240 175849 T04C9.1 ucgcuucuaaacccCCGGUCAu ||||||| guuuccaucucucuGGCCAGUu 2 9 70 91 [ce6:III:6005772-6005793:+] 0.5080 140 7 -12.68 -0.8734 MIMAT0000314 cel-miR-259 175849 T04C9.1 acgauggucuaauccuACUCUAAa ||||||| uucuuuuuaaaacucuUGAGAUUc 2 9 326 349 [ce6:III:6006028-6006051:+] 0.5080 140 7 -7.63 -0.8552 MIMAT0004220 cel-miR-785 175849 T04C9.1 agauGUGUUUUGUUAAGUGAAu | | :: ||:||||||| aucuCUCUGGCCAGUUCACUUu 2 19 76 97 [ce6:III:6005778-6005799:+] 0.5080 154 7 -14.60 -0.2265 MIMAT0004220 cel-miR-785 175849 T04C9.1 agauGUGUUUUGUUAAGUGAAu | | :: ||:||||||| aucuCUCUGGCCAGUUCACUUu 2 19 76 97 [ce6:III:6005778-6005799:+] 0.5080 154 7 -14.60 -0.3100

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 T04C9.1; CELE_T04C9.1 cel-miR-231 536 561 AAGAC--GGACAACUAGUGCUCGAAU || ||||| :|:||||| AUCCCCCCCUGUCAAGUAUGAGCUA- T04C9.1; CELE_T04C9.1 cel-miR-234 1019 1044 UUCCCAUAAG--AGC--UCGUUAUU- | |||||| ||| :||||||| -CGAGUAUUCGUUCGGCGGCAAUAAC T04C9.1; CELE_T04C9.1 cel-miR-245 941 988 -CUCGA----------UGAACCUCC--------------CCUGGUUA ||||| :||| |||| ||||||| GGAGCUGGUGGAGAUGGCUUUGAGGAAUUGGAAAGAAUUGGACCAAC T04C9.1; CELE_T04C9.1 cel-miR-248 850 879 ACUCGCAA---UAGG--CACGUGCACAUA- || :||| :||| ||||| |||||| CGAAUGUUUUAGUCCUUGUGCA-GUGUAUU T04C9.1; CELE_T04C9.1 cel-miR-249 851 871 CCGUUGCGAGUUUUCAGGA-CACU ||:|:|: |||||| ||| --GAAUGUUUU--AGUCCUUGUGC T04C9.1; CELE_T04C9.1 cel-miR-264 1031 1064 GUAUUGUUGUUGG--------------UGGGCGG- ::|::|||: |:|:||| --CGGCGGCAAUAACGGUAGAGAAUGAAUCUGCCA T04C9.1; CELE_T04C9.1 cel-miR-55 990 1017 -GAGUCG---UCUUUGAA--UAUGCCCAU ||::|| ||:| ||| |||||| GCUUGGCUUUAGGAUCUUCAAUACGGA-- T04C9.1; CELE_T04C9.1 cel-miR-56* 1041 1065 AUGUUGGGUUUUACCUAGGCGGU- || : |:|||| |||:|||| AACGGUAGAGAAUGAAUCUGCCAA T04C9.1; CELE_T04C9.1 cel-miR-59 113 134 GUAGUAGGACUAUUUGCUAAGCU- ||:||| ||||||| -UUCGUCCACACAA--GAUUCGAU T04C9.1; CELE_T04C9.1 cel-miR-73 1052 1077 UGACUU-GACGGA--UGUAGAACGGU- |||| ||||| ||||||| ||: -AUGAAUCUGCCAAAACAUCUU-CCGC T04C9.1; CELE_T04C9.1 cel-miR-75 940 965 ACUUCGGCCAACC---AUCGAAAUU- |:|||:|| ||| |:|||||:| AGGAGCUGG-UGGAGAUGGCUUUGAG T04C9.1; CELE_T04C9.1 cel-miR-786 1019 1040 UAACUUGU-AGUAAGUC-CCGUAAU ||: ||:|||:| |||| --CGAGUAUUCGUUCGGCGGCAA-- T04C9.1; CELE_T04C9.1 cel-miR-795 87 118 UUCGAGCG----ACUAGUUAGAUG--GAGU- ||:|| | |||||||||| :||: CAGUUCACUUUGUGAUCAAUCUCAGAUUCGU T04C9.1; CELE_T04C9.1 cel-miR-797 233 251 -AGAAGAGUAACACUAACGACACUAU |:||| || ||||||||| AUUUUC-CA-----AUUGCUGUGU-- T04C9.1; CELE_T04C9.1 cel-miR-82 81 112 UGACCGA--AAGUGC--UACU----AGAGU- ||||| ||||| :||| ||||| UCUGGCCAGUUCACUUUGUGAUCAAUCUCAG T04C9.1; CELE_T04C9.1 cel-miR-85 674 696 CGUGCUGAAA-AGUUUAUGAAACAU :|| |||||||||||| --CUGAAAAAAUCAAAUACUUUGA- T04C9.1; CELE_T04C9.1 cel-miR-87 898 928 CGUGU-GGACUUU-GAA-----ACGAGUG- :|: |:||||: ||| ||||||| AUAUUCCUUGAAGCCUUCUGGAUGCUCACU T04C9.1; CELE_T04C9.1 cel-miR-231 538 561 aagacGGACAACUAGUGCUCGAau ||||| | :|:||||| cccccCCTGTCAAGTATGAGCTat T04C9.1; CELE_T04C9.1 cel-miR-234 1018 1042 uuCCCAUAAG--AGC--UCGUUAUU | |||||| ||| :||||||| tcGAGTATTCGTTCGGCGGCAATAA T04C9.1; CELE_T04C9.1 cel-miR-245 962 987 CUCGAUGAACC--UC---CCCUGGUUa ||| | |||| || ||||||| GAG-GAATTGGAAAGAATTGGACCAAc T04C9.1; CELE_T04C9.1 cel-miR-249 849 870 ccgUUGCGAGUUUUCAGG-ACACu ||:|:|: ||||| |||| ccgAATGTTT--TAGTCCTTGTGc T04C9.1; CELE_T04C9.1 cel-miR-264 1062 1081 GUAUUGUUGUUGGUGGGCGg || |||| | ||:| ||| CAAAACATCTTCCGCACGCt T04C9.1; CELE_T04C9.1 cel-miR-41 259 284 aUCCA----CUAAAAAGUGGGCCACu |||| :|| ||||||| | | gAGGTTTCATGTTCTTCACCCCGCGc T04C9.1; CELE_T04C9.1 cel-miR-55 991 1018 GAGUCG---UCUUUGAA--UAUGCCCAu ||::|| ||:| ||| |||||| | CTTGGCTTTAGGATCTTCAATACGGATt T04C9.1; CELE_T04C9.1 cel-miR-59 112 132 guAGUAGGACUAUUUGCUAAGCU ||:||| | || ||||||| atTCGTCCACACAA--GATTCGA T04C9.1; CELE_T04C9.1 cel-miR-73 1051 1075 UGACUU-GACGG--AUGUAGAACGGu | |||| ||||| ||||||| || AATGAATCTGCCAAAACATCTT-CCg T04C9.1; CELE_T04C9.1 cel-miR-786 1016 1041 UAA-CUUGU-AGUAAGUC-CCGUAAU ||| ||::| ||:|||:| |||| || ATTCGAGTATTCGTTCGGCGGCAATA T04C9.1; CELE_T04C9.1 cel-miR-797 226 252 agaagAGUAACA--CUAACGACACuau |:||| | ||||||||| accaaTTATTTTCCAATTGCTGTGtcc T04C9.1; CELE_T04C9.1 cel-miR-85 673 696 cgugcugaaaAGUUUAUGAAACau |||||||||||| tctgaaaaaaTCAAATACTTTGat T04C9.1; CELE_T04C9.1 cel-miR-86 78 97 cuGACACCGUUUCGUAAGUGAAu || |||| | :||||||| ctCTCTGGCCA---GTTCACTTt T04C9.1; CELE_T04C9.1 cel-miR-87 910 926 CGUGUGGACUUUGAAACGAGUG || | :|||:| ||||||| GC-CTTCTGGA----TGCTCAC T04C9.1; CELE_T04C9.1 cel-miR-245 980 987 ------CUCGA-UGAACCUCC--------------CCUGGUUA ||| :||| |||| ||||||| CUGGUGGAGAUGGCUUUGAGGAAUUGGAAAGAAUUGGACCAAC T04C9.1; CELE_T04C9.1 cel-miR-86 90 97 CU-----------------------GACACCGUUUCGUAAGUGAAU || |||| :||||||| UUUGUUUCUCUCAUUGUUUCCAUCUCUCUGGCCA---GUUCACUUU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score T04C9.1 RAID00014011 cel-miR-73-3p miRNA MIMAT0000045 T04C9.1 mRNA 175849 Prediction 0.1828 T04C9.1 RAID00335507 cel-miR-785-3p miRNA MIMAT0004220 T04C9.1 mRNA 175849 Prediction 0.1828 T04C9.1 RAID00464649 cel-miR-240-3p miRNA MIMAT0000296 T04C9.1 mRNA 175849 Prediction 0.2202 T04C9.1 RAID00727807 cel-miR-259-5p miRNA MIMAT0000314 T04C9.1 mRNA 175849 Prediction 0.1828 T04C9.1 RAID00764678 cel-miR-797-5p miRNA MIMAT0004232 T04C9.1 mRNA 175849 Prediction 0.1828 T04C9.1 RAID02207599 cel-miR-245-3p miRNA MIMAT0000301 T04C9.1 mRNA 175849 Prediction 0.2202 T04C9.1 RAID02754123 cel-miR-236-3p miRNA MIMAT0000291 T04C9.1 mRNA 175849 Prediction 0.1828 T04C9.1 RAID03236225 cel-miR-86-5p miRNA MIMAT0000059 T04C9.1 mRNA 175849 Prediction 0.2202 T04C9.1 RAID03509179 cel-miR-85-3p miRNA MIMAT0000058 T04C9.1 mRNA 175849 Prediction 0.2202