DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015099 cel-miR-51* 177339 T12E12.1 acguGGACAUGGACGAAGGUAc ::| ||:: :|||||| uuucUUUAUAUUCUUUUCCAUa 2 19 91 112 [ce6:IV:5558473-5558494:+] 0.4459 134 6 -8.79 -0.1248 MIMAT0015102 cel-miR-60* 177339 T12E12.1 uaAAAUACCGUG-AGAAGGUCAa ||||| || | |||||:||| guUUUAUAGCUCUUCUUCUAGUa 2 21 8 30 [ce6:IV:5558390-5558412:+] 0.4459 159 0 -18.15 -0.1397 MIMAT0004229 cel-miR-794 177339 T12E12.1 ucacUGUUGCUACUAAUGGAGu | ||| || ||||||| cuaaAAAACAAU--UUACCUCc 2 19 54 73 [ce6:IV:5558436-5558455:+] 0.4459 151 7 -10.18 -0.8899 MIMAT0005031 cel-miR-1018 177339 T12E12.1 gaCAUUCAGGUUACUAGAGAGa | :| ||| : |||||||| uuGGGAUUCCUGAGAUCUCUCu 2 21 251 272 [ce6:IV:5558633-5558654:+] 0.4459 160 7 -19.64 -0.4441 MIMAT0006590 cel-miR-1823 177339 T12E12.1 aaugaggauuuguGAAGGUCAu ||||:||| uuuuauagcucuuCUUCUAGUa 2 10 9 30 [ce6:IV:5558391-5558412:+] 0.4459 129 0 -16.34 -0.1438 MIMAT0011452 cel-miR-2217 177339 T12E12.1 uggcuuuguccguguuCCCAGCu |||||| accuccauucaaaaauGGGUCGa 2 8 68 90 [ce6:IV:5558450-5558472:+] 0.4459 120 6 -16.68 -0.1683 MIMAT0011455 cel-miR-2218a 177339 T12E12.1 acuccgaauuuuGAACAUCAAAc || ||||||| auagcucuucuuCUAGUAGUUUu 2 12 13 35 [ce6:IV:5558395-5558417:+] 0.4459 147 7 -10.02 -0.8887 MIMAT0014446 cel-miR-2953-5p 177339 T12E12.1 uaAAAGUGCUUGUGAAGACAu |||| ||: :|||||| cuUUUCCAUAAUCUUUCUGUa 2 20 103 123 [ce6:IV:5558485-5558505:+] 0.4459 143 6 -11.83 -0.1224 MIMAT0014446 cel-miR-2953-5p 177339 T12E12.1 uaAAAGUGCUUGU-GAAGACAu ||| | ||:: :|||||| aaUUUGA--AAUGUUUUCUGUa 2 20 222 241 [ce6:IV:5558604-5558623:+] 0.4459 131 6 -12.87 -0.1625 MIMAT0000004 cel-miR-2 177339 T12E12.1 cguGUAGUU--UCGACCGACACUAu | |::| | :| ||||||| gcuCCUUGACCAUUUAUCUGUGAUc 2 21 172 196 [ce6:IV:5558554-5558578:+] 0.4459 143 7 -9.25 -0.6433 MIMAT0000014 cel-miR-43 177339 T12E12.1 cgcugucGUUCAUUUGACACUAu | | | | ||||||| uccuugaCCAUUUAUCUGUGAUc 2 17 174 196 [ce6:IV:5558556-5558578:+] 0.4459 148 7 -12.30 -0.6359 MIMAT0000015 cel-miR-44 177339 T12E12.1 ucgacuuACACAGAGAUCAgu | | :|||||| uuauagcUCUUCUUCUAGUag 3 15 11 31 [ce6:IV:5558393-5558413:+] 0.4459 122 0 -9.53 -0.4180 MIMAT0000016 cel-miR-45 177339 T12E12.1 ucgacuuACACAGAGAUCAgu | | :|||||| uuauagcUCUUCUUCUAGUag 3 15 11 31 [ce6:IV:5558393-5558413:+] 0.4459 122 0 -9.53 -0.4180 MIMAT0000032 cel-miR-60 177339 T12E12.1 acuugaucuuuuacacGUAUUAu |||||| ucuuuauauucuuuucCAUAAUc 2 8 93 115 [ce6:IV:5558475-5558497:+] 0.4459 120 6 -2.84 -0.1742 MIMAT0000033 cel-miR-61 177339 T12E12.1 cuacucauugccAAGAUCAgu ||||||| uuauagcucuucUUCUAGUag 3 10 11 31 [ce6:IV:5558393-5558413:+] 0.4459 125 0 -7.61 -0.4180 MIMAT0000282 cel-miR-124 177339 T12E12.1 accGUAAGUGGCGCACGGAAu ||||:|: ||||||| acuCAUUUAU--AGUGCCUUu 2 19 348 366 [ce6:IV:5558730-5558748:+] 0.4459 151 7 -18.18 -1.0012 MIMAT0000303 cel-miR-247 177339 T12E12.1 ucuucucuuauccGAGAUCAgu :|||||| uuuauagcucuucUUCUAGUag 3 10 10 31 [ce6:IV:5558392-5558413:+] 0.4459 121 0 -7.98 -0.4180 MIMAT0000306 cel-miR-250 177339 T12E12.1 acggUUGUCAACUGACACUAa | || || ||||||| cuugACCAUUUAUCUGUGAUc 2 18 176 196 [ce6:IV:5558558-5558578:+] 0.4459 153 7 -12.59 -0.6322 MIMAT0000697 cel-miR-355 177339 T12E12.1 guaucgaguccgaUUUUGUUu ||||||| cccauguaucuaaAAAACAAu 2 9 45 65 [ce6:IV:5558427-5558447:+] 0.4459 140 7 -6.91 -1.0060 MIMAT0004232 cel-miR-797 177339 T12E12.1 agAAGAGUAAC-ACUAA--CGACACUAu | ||| ||| ||| ||||||| auUGCUCCUUGACCAUUUAUCUGUGAUc 2 24 169 196 [ce6:IV:5558551-5558578:+] 0.4459 153 7 -13.62 -0.6396 MIMAT0004232 cel-miR-797 177339 T12E12.1 agaagagUAACACUAACGACAC-UAu ||||| || ||||| || auguaggAUUGU--UUUCUGUGUAUu 2 19 286 309 [ce6:IV:5558668-5558691:+] 0.4459 123 0 -10.79 -0.6597

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 T12E12.1 cel-miR-124 350 367 ACCGUAAGUGGCGCACGGAAU ||||:|: ||||||| --UCAUUUAUA--GUGCCUUU T12E12.1 cel-miR-2 152 197 CGUGUAGUUU----------CGACC------------GACACUAU :|||||| ||| ||||||| AUACAUCACACUCUUUAAUUGCUCCUUGACCAUUUAUCUGUGAUC T12E12.1 cel-miR-241 349 372 -AGUAAAGAGCGUGGAUGGAGU- |||||| |::||| :|||| CUCAUUUAUAGUGCCUUUCUCAU T12E12.1 cel-miR-249 203 224 CCGUUGCGAGUUUU-CAGGACACU- ||:|: ||:|||||| ----CCGUUUCUCCUGUUCUGUGAA T12E12.1 cel-miR-250 170 197 -ACGG----UUGUCAACU-GACACUAA |||: :|| ||||||| UUGCUCCUUGACCAUUUAUCUGUGAUC T12E12.1 cel-miR-256 292 315 AUGUCAGAAGAUACGUA-AGGU- |: ||:||||:||:|| |||| GAUUGUUUUCUGUGUAUUUCCAU T12E12.1 cel-miR-43 177 197 CGCUGUCGUUCAUUUGACACUAU :||| || ||||||| UUGAC--CAUUUAU-CUGUGAUC T12E12.1 cel-miR-48 348 372 AGCGUAGAUGACUCGGAUGGAGU- | |||:||: | |||| :|||| ACUCAUUUAUAGUGCCUUUCUCAU T12E12.1 cel-miR-73 253 280 UGACUUGACGGAUG-UAGA------ACGGU |:|:| |||: |||| |||| --GGGAUU-CCUGAGAUCUCUCUUUUGCCC T12E12.1 cel-miR-794 60 74 UCACUGUUGCUACUAAUGGAGU ||||: ||||||| ---AACAAU-----UUACCUCC T12E12.1 cel-miR-797 269 307 -AGAAG---------AGUAACA-CUAACG----ACACUAU ||||: |||| |||||: |||| CUCUUUUGCCCAUGUUCAUGUAGGAUUGUUUUCUGUGU-- T12E12.1 cel-miR-80 250 271 -AGCCGAAAGUUGAUUACUAGAGU |:|| ||| ||:| |||||| UUUGGGAUUC--CUGA-GAUCUCU T12E12.1 cel-miR-81 250 271 UGAUCGAAAGUGCUACUAGAGU :|:| ||| :|| |||||| UUUGGGAUUCCUGA-GAUCUCU T12E12.1 cel-miR-82 250 271 UGACCGAAAGUGCUACUAGAGU :||| ||| :|| |||||| UUUGGGAUUCCUGA-GAUCUCU T12E12.1 cel-miR-87 255 283 CGUGUGGACUUUG------AAACGAGUG- |: |||||:|: ||||| ||: -GAUUCCUGAGAUCUCUCUUUUGCCCAUG T12E12.1 cel-miR-124 348 366 accGUAAGUGGCGCACGGAAu ||||:|: ||||||| actCATTTAT--AGTGCCTTt T12E12.1 cel-miR-241 350 370 AGUAAAGAGCGUGGAUGGAGU |||||| | |::||| :|||| TCATTTATAGTGCCTTTCTCA T12E12.1 cel-miR-249 199 222 ccguuGC-GAGUUUUCAGGACACU || :|| ||:|||||| attccCGTTTCTCCTGTTCTGTGA T12E12.1 cel-miR-73 259 279 uGACUUGACGGAUGUAGAACGGu ||||: | :|| | |:||||| cCTGAGATCTCT-C-TTTTGCCc T12E12.1 cel-miR-797 270 308 AGAAGA---GUA-----ACA--CUAAC----GACACuau ||||:| ||| ||| ||||| ||||| TCTTTTGCCCATGTTCATGTAGGATTGTTTTCTGTGtat T12E12.1 cel-miR-80 251 270 AGCCGAAAGUUGAUUACUAGAGu |:|| ||| || : |||||| TTGGGATTC--CT-GAGATCTCt T12E12.1 cel-miR-87 254 281 CGUGUGGACUUU------GAAACGAGUg | |: |||||:| :||||| || GGATTCCTGAGATCTCTCTTTTGCCCAt T12E12.1 cel-miR-124 359 366 ACC------------------------GUAAGUGGCGCACGGAAU ||||:|: ||||||| AUUUUUUUUGUCCUGUUCACACAUACUCAUUUAUA--GUGCCUUU T12E12.1 cel-miR-2 189 196 CGUGUAGUUU----------CGACC------------GACACUAU |||||| ||| ||||||| --ACAUCACACUCUUUAAUUGCUCCUUGACCAUUUAUCUGUGAUC T12E12.1 cel-miR-250 189 196 -----------------ACGG----UUGUCAACU-GACACUAA |||: :|| ||||||| ACAUCACACUCUUUAAUUGCUCCUUGACCAUUUAUCUGUGAUC T12E12.1 cel-miR-43 189 196 C-----------------------GCUGUCGUUCAUUUGACACUAU :||| || || ||||||| ACAUCACACUCUUUAAUUGCUCCUUGAC--CAUUUAU-CUGUGAUC T12E12.1 cel-miR-794 66 73 UCAC--------------------------UGUUGCUACUAAUGGAGU ||||: ||||||| GUUUUCUGUAUAUCCCCAUGUAUCUAAAAAACAAU-----UUACCUCC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score T12E12.1 RAID00409538 cel-miR-45-3p miRNA MIMAT0000016 T12E12.1 mRNA 177339 Prediction 0.1828 T12E12.1 RAID00935798 cel-miR-58a-3p miRNA MIMAT0000030 T12E12.1 mRNA 177339 Prediction 0.1828 T12E12.1 RAID01013451 cel-miR-355-5p miRNA MIMAT0000697 T12E12.1 mRNA 177339 Prediction 0.1828 T12E12.1 RAID01055268 cel-miR-247-3p miRNA MIMAT0000303 T12E12.1 mRNA 177339 Prediction 0.1828 T12E12.1 RAID01531838 cel-miR-84-5p miRNA MIMAT0000057 T12E12.1 mRNA 177339 Prediction 0.1828 T12E12.1 RAID01557094 cel-miR-60-3p miRNA MIMAT0000032 T12E12.1 mRNA 177339 Prediction 0.1828 T12E12.1 RAID01701251 cel-miR-82-3p miRNA MIMAT0000055 T12E12.1 mRNA 177339 Prediction 0.1828 T12E12.1 RAID01989523 cel-miR-61-3p miRNA MIMAT0000033 T12E12.1 mRNA 177339 Prediction 0.1828 T12E12.1 RAID02772583 cel-miR-250-3p miRNA MIMAT0000306 T12E12.1 mRNA 177339 Prediction 0.2202 T12E12.1 RAID02848446 cel-miR-124-3p miRNA MIMAT0000282 T12E12.1 mRNA 177339 Prediction 0.2381 T12E12.1 RAID03324685 cel-miR-2-3p miRNA MIMAT0000004 T12E12.1 mRNA 177339 Prediction 0.2202 T12E12.1 RAID03561861 cel-miR-43-3p miRNA MIMAT0000014 T12E12.1 mRNA 177339 Prediction 0.2202 T12E12.1 RAID03887796 cel-miR-797-5p miRNA MIMAT0004232 T12E12.1 mRNA 177339 Prediction 0.2381 T12E12.1 RAID04031004 cel-miR-44-3p miRNA MIMAT0000015 T12E12.1 mRNA 177339 Prediction 0.1828