DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000312 cel-miR-257 180930 T28B4.1 agugacccaugaggACUAUGag |||||| uuauuacaauaaaaUGAUACaa 3 9 115 136 [ce6:X:6596068-6596089:+] 0.4674 120 0 -6.77 -0.1674 MIMAT0004235 cel-miR-800 180930 T28B4.1 gccgucuguuAAAGGCUCAAAc ||| :|||||| uuuauccuuuUUUAUGAGUUUu 2 13 12 33 [ce6:X:6595965-6595986:+] 0.5553 136 6 -6.95 -0.2566 MIMAT0005032 cel-miR-1019 180930 T28B4.1 gaccuuucguuacaccuUAAUGUc |||||| gugauuucaugcugauuAUUACAa 2 8 100 123 [ce6:X:6596053-6596076:+] 0.4674 120 6 -5.53 -0.2270 MIMAT0005522 cel-miR-1021 180930 T28B4.1 ggcuccuaaaguguacuAGAGUGAa ||||||| -------------acacUCUCACUu 2 9 1 12 [ce6:X:6595954-6595965:+] 0.5553 140 7 -12.86 -1.0664 MIMAT0011455 cel-miR-2218a 180930 T28B4.1 acUCCGAAUUUUGAACAU-CAAAc || :|||||| ||||| |||| ugAGUUUUAAAA-UUGUAUGUUUa 2 22 26 48 [ce6:X:6595979-6596001:+] 0.5553 143 0 -14.76 -1.2897 MIMAT0011463 cel-miR-2221 180930 T28B4.1 ugaucgccagaccauAGUGAAc |||||| ---------acacucUCACUUu 2 8 1 13 [ce6:X:6595954-6595966:+] 0.5553 120 6 -5.06 -0.1283 MIMAT0000004 cel-miR-2 180930 T28B4.1 cgUGUA-GUUUCGACCGACACUAu |:|| :| | | ||||||| uuAUAUGUAUAUGUAACUGUGAUu 2 22 82 105 [ce6:X:6596035-6596058:+] 0.5113 148 7 -11.57 -1.1159 MIMAT0000014 cel-miR-43 180930 T28B4.1 cgcUGU-CGUUCAU-UUGACACUAu |:| |:| |: ||||||||| uuuAUAUGUAUAUGUAACUGUGAUu 2 21 81 105 [ce6:X:6596034-6596058:+] 0.5113 154 7 -14.47 -1.1137 MIMAT0000047 cel-miR-75 180930 T28B4.1 acuucggccAACCAUCGAAAUu || ||:|||| uauccuuuuUUAUGAGUUUUAa 2 14 14 35 [ce6:X:6595967-6595988:+] 0.5553 125 0 -6.96 -0.1094 MIMAT0000051 cel-miR-79 180930 T28B4.1 ucGAAACCAUUGGAUCGAAAUa |||| || : ||:|||| ucCUUUUUUA--UGAGUUUUAa 2 21 16 35 [ce6:X:6595969-6595988:+] 0.5553 133 0 -5.65 -0.1084 MIMAT0000059 cel-miR-86 180930 T28B4.1 cugacaccguuucguaAGUGAAu |||||| ----------acacucUCACUUu 2 8 1 13 [ce6:X:6595954-6595966:+] 0.5553 120 6 -7.18 -0.1270 MIMAT0000306 cel-miR-250 180930 T28B4.1 acgguUGUCAACUGACACUAa |:| | |||||||| uauguAUAUGUAACUGUGAUu 2 17 85 105 [ce6:X:6596038-6596058:+] 0.5113 152 7 -12.87 -1.1159 MIMAT0000749 cel-lsy-6 180930 T28B4.1 gcuuuacgcagAGUAUGUUuu | |||||| uuacaauaaaaUGAUACAAc- 3 11 118 137 [ce6:X:6596071-6596090:+] 0.4674 122 0 -4.74 -0.2131 MIMAT0000768 cel-miR-392 180930 T28B4.1 aguagugugcacuAGCUACUAu |||||||| aaaauuuuuauuuUCGAUGAUg 2 10 48 69 [ce6:X:6596001-6596022:+] 0.5553 145 7 -12.80 -1.1135 MIMAT0004220 cel-miR-785 180930 T28B4.1 agauguguuuuguuaAGUGAAu |||||| ---------acacucUCACUUu 2 8 1 13 [ce6:X:6595954-6595966:+] 0.5553 120 6 -7.17 -0.1295 MIMAT0004227 cel-miR-792 180930 T28B4.1 agACUUUCAACUU--CUCUAAAGUu || | | || | ||||||| uaUGUAUAUGUAACUGUGAUUUCAu 2 22 85 109 [ce6:X:6596038-6596062:+] 0.5113 144 7 -8.18 -0.9180 MIMAT0004232 cel-miR-797 180930 T28B4.1 agaaGAGUA-ACACUA-AC---GACACUAu :|:|| ||| || || ||||||| caaaUUUAUAUGU-AUAUGUAACUGUGAUu 2 22 77 105 [ce6:X:6596030-6596058:+] 0.5113 148 7 -12.23 -1.1091

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score T28B4.1 RAID00804834 cel-miR-2-3p miRNA MIMAT0000004 T28B4.1 mRNA 180930 Prediction 0.1828 T28B4.1 RAID00811929 cel-miR-43-3p miRNA MIMAT0000014 T28B4.1 mRNA 180930 Prediction 0.1828 T28B4.1 RAID00911297 cel-miR-785-3p miRNA MIMAT0004220 T28B4.1 mRNA 180930 Prediction 0.1828 T28B4.1 RAID01024640 cel-miR-792-3p miRNA MIMAT0004227 T28B4.1 mRNA 180930 Prediction 0.1828 T28B4.1 RAID01115481 cel-miR-75-3p miRNA MIMAT0000047 T28B4.1 mRNA 180930 Prediction 0.1828 T28B4.1 RAID01338575 cel-miR-797-5p miRNA MIMAT0004232 T28B4.1 mRNA 180930 Prediction 0.2202 T28B4.1 RAID01434267 cel-lsy-6-3p miRNA MIMAT0000749 T28B4.1 mRNA 180930 Prediction 0.1828 T28B4.1 RAID01735574 cel-miR-79-3p miRNA MIMAT0000051 T28B4.1 mRNA 180930 Prediction 0.1828 T28B4.1 RAID02209480 cel-miR-392-3p miRNA MIMAT0000768 T28B4.1 mRNA 180930 Prediction 0.1828 T28B4.1 RAID02368084 cel-miR-250-3p miRNA MIMAT0000306 T28B4.1 mRNA 180930 Prediction 0.1828 T28B4.1 RAID03790227 cel-miR-86-5p miRNA MIMAT0000059 T28B4.1 mRNA 180930 Prediction 0.1828