DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000317 cel-miR-262 171920 pcaf-1 uagucuuuuguAGCUCUUUg |:|||||| uuugugauuuuUUGAGAAAa 2 10 101 120 [ce6:I:3523353-3523372:+] 0.5381 129 6 -8.11 -0.4685 MIMAT0005031 cel-miR-1018 171920 pcaf-1 gacAUUCAGGUUACUAGAGAGa |:| | :| |||||||: uauUGAUUAAGACGAUCUCUUu 2 20 45 66 [ce6:I:3523297-3523318:+] 0.5381 139 0 -12.54 -0.1646 MIMAT0015266 cel-miR-1822* 171920 pcaf-1 cggcuauCGAAAGGGUCUCUUUga | |||::: |||||| cuuuuguGAUUUUUU-GAGAAAaa 3 18 99 121 [ce6:I:3523351-3523373:+] 0.5381 131 0 -9.34 -0.3849 MIMAT0006776 cel-miR-1834 171920 pcaf-1 aaccuagaguuaccaaCUAGAGa |||||| auauauugauuaagacGAUCUCu 2 8 42 64 [ce6:I:3523294-3523316:+] 0.5381 120 6 -10.15 -0.3389 MIMAT0011425 cel-miR-2207 171920 pcaf-1 gaaUAUGUGUCAGAGUUAAGUGu | | |:| | ||||||: gaaAAAAAUA-UAAAAAUUCAUu 2 21 116 137 [ce6:I:3523368-3523389:+] 0.5381 126 0 -6.62 -0.1303 MIMAT0011425 cel-miR-2207 171920 pcaf-1 gaauAUGUGUCA-GAGUUAAGUgu || | || :|||||| uuguUAAUCUGUAAAUAAUUCAau 3 20 1 24 [ce6:I:3523253-3523276:+] 0.5381 122 0 -7.31 -0.1899 MIMAT0011427 cel-miR-2208a 171920 pcaf-1 ccuauagucuaagcccAUGUGAa |||||| uuuuauuuauuuauuaUACACUa 2 8 64 86 [ce6:I:3523316-3523338:+] 0.5381 120 6 -5.55 -0.5961 MIMAT0011429 cel-miR-2208b-5p 171920 pcaf-1 ccuauagucuaggcccAUGUGAa |||||| uuuuauuuauuuauuaUACACUa 2 8 64 86 [ce6:I:3523316-3523338:+] 0.5381 120 6 -8.13 -0.5997 MIMAT0011431 cel-miR-2209a* 171920 pcaf-1 cuuccucuucucaccaAUGUGAg |||||| uuuuauuuauuuauuaUACACUa 2 8 64 86 [ce6:I:3523316-3523338:+] 0.5381 120 6 -6.57 -0.6071 MIMAT0011432 cel-miR-2209a 171920 pcaf-1 acaucacauuggcgaCUAGAGa |||||| uauauugauuaagacGAUCUCu 2 8 43 64 [ce6:I:3523295-3523316:+] 0.5381 120 6 -10.43 -0.3389 MIMAT0011433 cel-miR-2209c* 171920 pcaf-1 uuuguucugcacgccaAUGUGAg |||||| uuuuauuuauuuauuaUACACUa 2 8 64 86 [ce6:I:3523316-3523338:+] 0.5381 120 6 -6.32 -0.5997 MIMAT0011436 cel-miR-2210* 171920 pcaf-1 cacccaucucguuagCUGAAAu |||||| cacuauauugauucaGACUUUu 2 8 82 103 [ce6:I:3523334-3523355:+] 0.5381 120 6 -6.65 -0.1311 MIMAT0000004 cel-miR-2 171920 pcaf-1 cguguAGUUUCGACCGACACUAu |||:| :| :|||||| uugauUCAGACUU--UUGUGAUu 2 19 89 109 [ce6:I:3523341-3523361:+] 0.5381 135 6 -11.61 -0.2270 MIMAT0000014 cel-miR-43 171920 pcaf-1 cgcUGUCGUUCA-UUU---GACACUAu |:| ::| | |:| :|||||| acuAUAUUGAUUCAGACUUUUGUGAUu 2 21 83 109 [ce6:I:3523335-3523361:+] 0.5381 126 6 -11.75 -0.2456 MIMAT0000030 cel-miR-58 171920 pcaf-1 uaacggcaUGACU-UGCUAGAGu |:| | |||||||| auauauugAUUAAGACGAUCUCu 2 15 42 64 [ce6:I:3523294-3523316:+] 0.5381 149 7 -16.46 -1.2705 MIMAT0000053 cel-miR-80 171920 pcaf-1 agccgAAAGUUGAU--UACUAGAGu | |::|:|| | |||||| uuauaUAUUGAUUAAGACGAUCUCu 2 19 40 64 [ce6:I:3523292-3523316:+] 0.5381 125 6 -10.33 -0.3389 MIMAT0000054 cel-miR-81 171920 pcaf-1 ugAUCGAAAGUGCUACUAGAGu || : |:| || |||||| uaUAUUGAUUAAGACGAUCUCu 2 21 43 64 [ce6:I:3523295-3523316:+] 0.5381 128 6 -9.55 -0.3417 MIMAT0000055 cel-miR-82 171920 pcaf-1 ugaccgaaAGUGCUACUAGAGu |:| || |||||| uauauugaUUAAGACGAUCUCu 2 15 43 64 [ce6:I:3523295-3523316:+] 0.5381 126 6 -10.74 -0.3417 MIMAT0000306 cel-miR-250 171920 pcaf-1 acgguuGUCAACUGACACUAa ||| :|||||| uugauuCAGACUUUUGUGAUu 2 16 89 109 [ce6:I:3523341-3523361:+] 0.5381 127 6 -12.62 -0.2412 MIMAT0000749 cel-lsy-6 171920 pcaf-1 gcuuuacgcagagUAUGUUUu |||:||| uuuugagaaaaaaAUAUAAAa 2 9 110 130 [ce6:I:3523362-3523382:+] 0.5381 124 0 -6.30 -0.1181 MIMAT0004232 cel-miR-797 171920 pcaf-1 agAAGAGUAACACUAACGACACUAu | :| ||| || | :|||||| uaUAUUGAUUCAGACUUUUGUGAUu 2 24 85 109 [ce6:I:3523337-3523361:+] 0.5381 147 6 -10.73 -0.2412

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score pcaf-1 RAID00362666 cel-miR-250-3p miRNA MIMAT0000306 pcaf-1 mRNA 171920 Prediction 0.1828 pcaf-1 RAID00644409 cel-miR-81-3p miRNA MIMAT0000054 pcaf-1 mRNA 171920 Prediction 0.1828 pcaf-1 RAID01651814 cel-miR-797-5p miRNA MIMAT0004232 pcaf-1 mRNA 171920 Prediction 0.1828 pcaf-1 RAID01913073 cel-lsy-6-3p miRNA MIMAT0000749 pcaf-1 mRNA 171920 Prediction 0.1828 pcaf-1 RAID02155354 cel-miR-2-3p miRNA MIMAT0000004 pcaf-1 mRNA 171920 Prediction 0.1828 pcaf-1 RAID02368579 cel-miR-58a-3p miRNA MIMAT0000030 pcaf-1 mRNA 171920 Prediction 0.2202 pcaf-1 RAID02469729 cel-miR-80-3p miRNA MIMAT0000053 pcaf-1 mRNA 171920 Prediction 0.1828 pcaf-1 RAID02559591 cel-miR-43-3p miRNA MIMAT0000014 pcaf-1 mRNA 171920 Prediction 0.1828 pcaf-1 RAID02867330 cel-miR-82-3p miRNA MIMAT0000055 pcaf-1 mRNA 171920 Prediction 0.2202