DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015119 cel-miR-247* 171700 Y48G8AL.1 ccaUUAAUCUUUGAAAAG-AGAu |||| ||| ||||| ||| aggAAUU-GAACGUUUUCAUCUg 2 20 95 116 [ce6:I:1254595-1254616:+] 0.4556 129 0 -12.36 -0.8917 MIMAT0015121 cel-miR-360* 171700 Y48G8AL.1 acuggcauuguuGCCAGUGUu :||||||| ucuuuuugcuuuUGGUCACAc 2 10 31 51 [ce6:I:1254531-1254551:+] 0.6070 141 7 -12.39 -1.2527 MIMAT0011427 cel-miR-2208a 171700 Y48G8AL.1 ccuAUAGUCUAAGCCCA-UGUGAa | |: | ||: ||| ||||| uucUUUUUGCUUUUGGUCACACUu 2 21 30 53 [ce6:I:1254530-1254553:+] 0.6070 124 0 -11.88 -1.1093 MIMAT0011429 cel-miR-2208b-5p 171700 Y48G8AL.1 ccuAUAGUCUAGGCCCA-UGUGAa | |: | |:: ||| ||||| uucUUUUUGCUUUUGGUCACACUu 2 21 30 53 [ce6:I:1254530-1254553:+] 0.6070 120 0 -11.81 -1.1116 MIMAT0011455 cel-miR-2218a 171700 Y48G8AL.1 acuccGAAUUUUGAACAUCAAAc :||| :| || |||||| ucaauUUUAUGA-UUCUAGUUUu 2 19 125 146 [ce6:I:1254625-1254646:+] 0.4936 128 6 -4.34 -0.1450 MIMAT0000004 cel-miR-2 171700 Y48G8AL.1 cguguaguuucgaccGACACUAu ||||||| cuuauuuucuuuccuCUGUGAUa 2 9 56 78 [ce6:I:1254556-1254578:+] 0.6070 140 7 -11.43 -1.1882 MIMAT0000014 cel-miR-43 171700 Y48G8AL.1 cgcugucguucauuuGACACUAu ||||||| cuuauuuucuuuccuCUGUGAUa 2 9 56 78 [ce6:I:1254556-1254578:+] 0.6070 140 7 -11.16 -1.1882 MIMAT0000015 cel-miR-44 171700 Y48G8AL.1 ucgacuuACACAGAGAUCAGu | || :||||||: ucaauuuUAUGAUUCUAGUUu 2 15 125 145 [ce6:I:1254625-1254645:+] 0.4936 134 0 -10.05 -0.1518 MIMAT0000016 cel-miR-45 171700 Y48G8AL.1 ucgacuuACACAGAGAUCAGu | || :||||||: ucaauuuUAUGAUUCUAGUUu 2 15 125 145 [ce6:I:1254625-1254645:+] 0.4936 134 0 -10.05 -0.1518 MIMAT0000033 cel-miR-61 171700 Y48G8AL.1 cuacucAUUGCCAAGAUCAGu | |:| |||||||: ucaauuUUAUGAUUCUAGUUu 2 16 125 145 [ce6:I:1254625-1254645:+] 0.4936 139 0 -10.76 -0.1547 MIMAT0000043 cel-miR-71 171700 Y48G8AL.1 agugauggguacAGAAAGu |||||| cuuuucuuauuuUCUUUCc 2 8 51 69 [ce6:I:1254551-1254569:+] 0.6070 120 6 -7.33 -0.1624 MIMAT0000303 cel-miR-247 171700 Y48G8AL.1 ucuucucuuAU-CCGAGAUCAGu || | :||||||: caucaauuuUAUGAUUCUAGUUu 2 14 123 145 [ce6:I:1254623-1254645:+] 0.4936 128 0 -8.76 -0.1547 MIMAT0000306 cel-miR-250 171700 Y48G8AL.1 acgguugucaacuGACACUAa ||||||| uauuuucuuuccuCUGUGAUa 2 9 58 78 [ce6:I:1254558-1254578:+] 0.6070 140 7 -8.93 -1.1865 MIMAT0004232 cel-miR-797 171700 Y48G8AL.1 agAAGAGUAACACUAA--CGACACUAu ||||:||| | || ||||||| uuUUCUUAUUUUCUUUCCUCUGUGAUa 2 24 52 78 [ce6:I:1254552-1254578:+] 0.6070 166 7 -17.76 -1.1830

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score herc-1 RAID00391125 cel-miR-2-3p miRNA MIMAT0000004 herc-1 mRNA 171700 Prediction 0.2202 herc-1 RAID00793031 cel-miR-43-3p miRNA MIMAT0000014 herc-1 mRNA 171700 Prediction 0.2202 herc-1 RAID01002960 cel-miR-247-3p miRNA MIMAT0000303 herc-1 mRNA 171700 Prediction 0.1828 herc-1 RAID01201008 cel-miR-45-3p miRNA MIMAT0000016 herc-1 mRNA 171700 Prediction 0.1828 herc-1 RAID01683143 cel-miR-61-3p miRNA MIMAT0000033 herc-1 mRNA 171700 Prediction 0.1828 herc-1 RAID02051634 cel-miR-71-5p miRNA MIMAT0000043 herc-1 mRNA 171700 Prediction 0.1828 herc-1 RAID02693076 cel-miR-250-3p miRNA MIMAT0000306 herc-1 mRNA 171700 Prediction 0.1828 herc-1 RAID03032380 cel-miR-44-3p miRNA MIMAT0000015 herc-1 mRNA 171700 Prediction 0.1828 herc-1 RAID03949567 cel-miR-797-5p miRNA MIMAT0004232 herc-1 mRNA 171700 Prediction 0.2202