DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015105 cel-miR-64* 171646 Y65B4BR.5 cguacgguGACUA--GCAACGUg ||||| | ||||| cuuguuucCUGAUGACCUUGCAg 2 14 1 23 [ce6:I:536497-536519:+] 0.8509 120 0 -10.41 -0.1941 MIMAT0015105 cel-miR-64* 171646 Y65B4BR.5 cgUACGGUGAC--UAGCAACGUg || |: :|| |||||||:| agAUACUCUUGUUAUCGUUGUAu 2 20 22 44 [ce6:I:536518-536540:+] 0.8509 142 0 -14.96 -0.1005 MIMAT0015105 cel-miR-64* 171646 Y65B4BR.5 cguacgguGACUA--GCAACGUg ||||| | ||||| cuuguuucCUGAUGACCUUGCAg 2 14 1 23 [ce6:I:536497-536519:+] 0.8509 120 0 -10.41 -0.1587 MIMAT0015112 cel-miR-229* 171646 Y65B4BR.5 gauACUGUGGGCUA-UGGAAAGa || : ||:||| ||||| | -cuUGUUUCCUGAUGACCUUGCa 2 20 1 22 [ce6:I:536497-536518:+] 0.8509 130 0 -14.63 -0.5184 MIMAT0015112 cel-miR-229* 171646 Y65B4BR.5 gauACUGUGGGCUA-UGGAAAGa || : ||:||| ||||| | -cuUGUUUCCUGAUGACCUUGCa 2 20 1 22 [ce6:I:536497-536518:+] 0.8509 130 0 -14.63 -0.2248 MIMAT0015112 cel-miR-229* 171646 Y65B4BR.5 gauACUGUGGGCUA-UGGAAAGa || : ||:||| ||||| | -cuUGUUUCCUGAUGACCUUGCa 2 20 1 22 [ce6:I:536497-536518:+] 0.8509 130 0 -14.63 -0.2979 MIMAT0000312 cel-miR-257 171646 Y65B4BR.5 agugacccaugaggaCUAUGAg |||||| ccugaugaccuugcaGAUACUc 2 8 8 29 [ce6:I:536504-536525:+] 0.8509 120 6 -14.22 -0.2572 MIMAT0000312 cel-miR-257 171646 Y65B4BR.5 agugacccaugaggaCUAUGAg |||||| ccugaugaccuugcaGAUACUc 2 8 8 29 [ce6:I:536504-536525:+] 0.8509 120 6 -14.22 -0.1122 MIMAT0000312 cel-miR-257 171646 Y65B4BR.5 agugacccaugaggaCUAUGAg |||||| ccugaugaccuugcaGAUACUc 2 8 8 29 [ce6:I:536504-536525:+] 0.8509 120 6 -14.22 -0.2988 MIMAT0000322 cel-miR-266 171646 Y65B4BR.5 cgaAACGGUUUCAGAACGGa |||: | ||||||: ucgUUGU--AUCUCUUGCUu 2 18 36 53 [ce6:I:536532-536549:+] 0.8509 126 0 -10.88 -0.1999 MIMAT0000322 cel-miR-266 171646 Y65B4BR.5 cgaAACGGUUUCAGAACGGa |||: | ||||||: ucgUUGU--AUCUCUUGCUu 2 18 36 53 [ce6:I:536532-536549:+] 0.8509 126 0 -10.88 -0.2172 MIMAT0000324 cel-miR-268 171646 Y65B4BR.5 ugguuugacgAAGAUUAAGAACGg || || |||||| cuuguuaucgUUGUAUCUCUUGCu 2 15 29 52 [ce6:I:536525-536548:+] 0.8509 122 6 -12.20 -0.1882 MIMAT0000324 cel-miR-268 171646 Y65B4BR.5 ugguuugacgAAGAUUAAGAACGg || || |||||| cuuguuaucgUUGUAUCUCUUGCu 2 15 29 52 [ce6:I:536525-536548:+] 0.8509 122 6 -12.20 -0.2981 MIMAT0000325 cel-miR-269 171646 Y65B4BR.5 ucaaaacggucucAGAACGg |||||| uuaucguuguaucUCUUGCu 2 8 33 52 [ce6:I:536529-536548:+] 0.8509 120 6 -9.42 -0.1864 MIMAT0000325 cel-miR-269 171646 Y65B4BR.5 ucaaaacggucucAGAACGg |||||| uuaucguuguaucUCUUGCu 2 8 33 52 [ce6:I:536529-536548:+] 0.8509 120 6 -9.42 -0.2955 MIMAT0015239 cel-miR-786* 171646 Y65B4BR.5 cauUUAUGGGGUUGACUAUAAGc :||: ||: :| |||| || ccuGAUGACCUUGCAGAUACUCu 2 21 8 30 [ce6:I:536504-536526:+] 0.8509 128 0 -7.63 -0.1793 MIMAT0005031 cel-miR-1018 171646 Y65B4BR.5 gacauucaGGUUAC-UAGAGAGa :|: || ||||||: ucuuguuaUCGUUGUAUCUCUUg 2 15 28 50 [ce6:I:536524-536546:+] 0.8509 129 0 -12.93 -0.1175 MIMAT0005031 cel-miR-1018 171646 Y65B4BR.5 gacauucaGGUUAC-UAGAGAGa :|: || ||||||: ucuuguuaUCGUUGUAUCUCUUg 2 15 28 50 [ce6:I:536524-536546:+] 0.8509 129 0 -12.93 -0.1273 MIMAT0006776 cel-miR-1834 171646 Y65B4BR.5 aaccuAGAGU--UACCAAC-UAGAGa |||:: || |||| ||||| gauacUCUUGUUAUCGUUGUAUCUCu 2 19 23 48 [ce6:I:536519-536544:+] 0.8509 125 0 -14.89 -1.1003 MIMAT0006776 cel-miR-1834 171646 Y65B4BR.5 aaccuAGAGU--UACCAAC-UAGAGa |||:: || |||| ||||| gauacUCUUGUUAUCGUUGUAUCUCu 2 19 23 48 [ce6:I:536519-536544:+] 0.8509 125 0 -14.89 -1.1873 MIMAT0011432 cel-miR-2209a 171646 Y65B4BR.5 acaucACAUUGGCGAC-UAGAGa ||| |:||:|| ||||| acucuUGUUAUCGUUGUAUCUCu 2 18 26 48 [ce6:I:536522-536544:+] 0.8509 133 0 -20.33 -1.0956 MIMAT0011432 cel-miR-2209a 171646 Y65B4BR.5 acaucACAUUGGCGAC-UAGAGa ||| |:||:|| ||||| acucuUGUUAUCGUUGUAUCUCu 2 18 26 48 [ce6:I:536522-536544:+] 0.8509 133 0 -20.33 -1.1839 MIMAT0011434 cel-miR-2209c 171646 Y65B4BR.5 acaucacauuggccacCAGAAAa |||||| aaguaaacguuuaucaGUCUUUu 2 8 71 93 [ce6:I:536567-536589:+] 0.6576 120 6 -9.79 -0.1161 MIMAT0011434 cel-miR-2209c 171646 Y65B4BR.5 acaucacauuggccacCAGAAAa |||||| aaguaaacguuuaucaGUCUUUu 2 8 71 93 [ce6:I:536567-536589:+] 0.6576 120 6 -9.79 -0.3231 MIMAT0011462 cel-miR-2220 171646 Y65B4BR.5 gacAUUCAGG-UGUUUGUUAACu || ||:: | ||||||||| uguUAUGUUUAAAAAACAAUUGc 2 20 104 126 [ce6:I:536600-536622:+] 0.4642 162 7 -13.50 -1.0784 MIMAT0000043 cel-miR-71 171646 Y65B4BR.5 aguGAUGGGUACAGAAAGu :|| :|| ||||||: cguUUA-UCA-GUCUUUUu 2 17 78 94 [ce6:I:536574-536590:+] 0.6576 128 0 -10.78 -0.3385 MIMAT0000043 cel-miR-71 171646 Y65B4BR.5 aguGAUGGGUACAGAAAGu :|| :|| ||||||: cguUUA-UCA-GUCUUUUu 2 17 78 94 [ce6:I:536574-536590:+] 0.6576 128 0 -10.78 -0.2922 MIMAT0000044 cel-miR-72 171646 Y65B4BR.5 aguCGAUA-CGGU-UGUAGAACGGa |:||| |::: |: ||||||: cuuGUUAUCGUUGUAUCUCUUGCUu 2 21 29 53 [ce6:I:536525-536549:+] 0.8509 138 0 -14.07 -0.2017 MIMAT0000044 cel-miR-72 171646 Y65B4BR.5 aguCGAUA-CGGU-UGUAGAACGGa |:||| |::: |: ||||||: cuuGUUAUCGUUGUAUCUCUUGCUu 2 21 29 53 [ce6:I:536525-536549:+] 0.8509 138 0 -14.07 -0.2192 MIMAT0000045 cel-miR-73 171646 Y65B4BR.5 ugACUUGACGGAUGUAGAACGGu | | | : ||: ||||||: ugUUAUCGUUGUAUCUCUUGCUu 2 22 31 53 [ce6:I:536527-536549:+] 0.8509 133 0 -11.36 -0.1999 MIMAT0000045 cel-miR-73 171646 Y65B4BR.5 ugACUUGACGGAUGUAGAACGGu | | | : ||: ||||||: ugUUAUCGUUGUAUCUCUUGCUu 2 22 31 53 [ce6:I:536527-536549:+] 0.8509 133 0 -11.36 -0.2172 MIMAT0000046 cel-miR-74 171646 Y65B4BR.5 acaucUGACGGUAAAGAACGGu ::|| :|| ||||||: uuaucGUUG-UAUCUCUUGCUu 2 18 33 53 [ce6:I:536529-536549:+] 0.8509 135 0 -10.98 -0.2017 MIMAT0000046 cel-miR-74 171646 Y65B4BR.5 acaucUGACGGUAAAGAACGGu ::|| :|| ||||||: uuaucGUUG-UAUCUCUUGCUu 2 18 33 53 [ce6:I:536529-536549:+] 0.8509 135 0 -10.98 -0.2192 MIMAT0000049 cel-miR-77 171646 Y65B4BR.5 accugucGAUACCGGACUACUu :|:| |||||||| ------cUUGUUUCCUGAUGAc 2 16 1 16 [ce6:I:536497-536512:+] 0.8509 151 7 -13.41 -1.3458 MIMAT0000049 cel-miR-77 171646 Y65B4BR.5 accugucGAUACCGGACUACUu :|:| |||||||| ------cUUGUUUCCUGAUGAc 2 16 1 16 [ce6:I:536497-536512:+] 0.8509 151 7 -13.41 -1.2692 MIMAT0000049 cel-miR-77 171646 Y65B4BR.5 accugucGAUACCGGACUACUu :|:| |||||||| ------cUUGUUUCCUGAUGAc 2 16 1 16 [ce6:I:536497-536512:+] 0.8509 151 7 -13.41 -1.2955 MIMAT0000058 cel-miR-85 171646 Y65B4BR.5 cgUGCUGAAAAGUUUAUGA-AACAu |:||| || ||:||||| |||| ugAUGACCUUGCAGAUACUCUUGUu 2 23 10 34 [ce6:I:536506-536530:+] 0.8509 150 0 -18.38 -1.3137 MIMAT0000058 cel-miR-85 171646 Y65B4BR.5 cgUGCUGAAAAGUUUAUGA-AACAu |:||| || ||:||||| |||| ugAUGACCUUGCAGAUACUCUUGUu 2 23 10 34 [ce6:I:536506-536530:+] 0.8509 150 0 -18.38 -1.1964 MIMAT0000058 cel-miR-85 171646 Y65B4BR.5 cgUGCUGAAAAGUUUAUGA-AACAu |:||| || ||:||||| |||| ugAUGACCUUGCAGAUACUCUUGU- 2 23 10 33 [ce6:I:536506-536529:+] 0.8509 150 0 -17.25 -1.3256 MIMAT0000697 cel-miR-355 171646 Y65B4BR.5 guAUCGAGUCCGA--UUUUGUUu | |:| | :| ||||||| uuUUGUUAUGUUUAAAAAACAAu 2 20 101 123 [ce6:I:536597-536619:+] 0.4642 142 7 -5.65 -1.0076

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 icd-2; Y65B4BR.5 cel-miR-241 127 149 AGUAAAG-AGCG----UGGAUGGAGU || ||| ||||||||: ----AUCUUCGAAUUGACCUACCUUU icd-2; Y65B4BR.5 cel-miR-248 57 86 ACUCGCAAUAGGCA-----CG--UGCACAUA- |||| ||||| |: |||| ||| ---CCGUUUUCCGUUCCAAGUAAACGUUUAUC icd-2; Y65B4BR.5 cel-miR-48 122 149 -AGCGUAGA----UGACUCGGAUGGAGU |:|||||| |:||| |||||||: AUUGCAUCUUCGAAUUGA-CCUACCUUU icd-2; Y65B4BR.5 cel-miR-85 11 35 CGUGCUGAAAAGUUUAUGA-AACAU |:||| ||:||||| |||| -GAUGACCUUGCAGAUACUCUUGUU icd-2; Y65B4BR.5 cel-miR-241 125 148 aGUA-AAG---AGCGUGGAUGGAgu ||| ||| |:| |||||||| gCATCTTCGAATTG-ACCTACCTtt icd-2; Y65B4BR.5 cel-miR-248 54 84 acucGCAAUAGGCACG-------UGCACAUA |||| ||||| | |||| ||| atccCGTTTTCCGTTCCAAGTAAACGTTTAT icd-2; Y65B4BR.5 cel-miR-48 123 148 AGCGUAGA----UGACUCGGAUGGAgu |:|||||| |:||| ||||||| TTGCATCTTCGAATTGA-CCTACCTtt icd-2; Y65B4BR.5 cel-miR-85 10 34 cgUGCUGAAAAGUUUAUGA-AACAu |:||| || ||:||||| |||| tgATGACCTTGCAGATACTCTTGTt

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score icd-2 RAID00534428 cel-miR-73-3p miRNA MIMAT0000045 icd-2 mRNA 171646 Prediction 0.1828 icd-2 RAID01236564 cel-miR-77-3p miRNA MIMAT0000049 icd-2 mRNA 171646 Prediction 0.1828 icd-2 RAID01300846 cel-miR-355-5p miRNA MIMAT0000697 icd-2 mRNA 171646 Prediction 0.1828 icd-2 RAID01775825 cel-miR-72-5p miRNA MIMAT0000044 icd-2 mRNA 171646 Prediction 0.1828 icd-2 RAID02533814 cel-miR-85-3p miRNA MIMAT0000058 icd-2 mRNA 171646 Prediction 0.1828 icd-2 RAID02626246 cel-miR-71-5p miRNA MIMAT0000043 icd-2 mRNA 171646 Prediction 0.1828 icd-2 RAID03727406 cel-miR-74-3p miRNA MIMAT0000046 icd-2 mRNA 171646 Prediction 0.1828