DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015110 cel-miR-84* 172053 Y119C1B.5 cggcucaaucAACUUUGUAACAc || ||| ||||| ------acuuUUAAAAAAUUGUu 2 14 1 17 [ce6:I:4511593-4511609:-] 0.5371 125 0 -1.93 -0.1027 MIMAT0000698 cel-miR-356 172053 Y119C1B.5 acUAAACAAGCG-CAACGAGUu | ||| || ||||||| uaAAUUGCCGGCAUUUGCUCAa 2 20 96 117 [ce6:I:4511493-4511514:-] 0.5371 146 7 -11.90 -1.1416 MIMAT0005822 cel-miR-1019* 172053 Y119C1B.5 uuuuACUUUGA-GCUUGU-UACGAGUg | |||:| | ::|| |||||| uuguUUAAAUUGCCGGCAUUUGCUCAa 2 22 91 117 [ce6:I:4511493-4511519:-] 0.5371 127 6 -13.01 -0.1126 MIMAT0011425 cel-miR-2207 172053 Y119C1B.5 gaAUAUGUGUCAGAGUUAA-GUGu |:|||||:| |||| ||| ugUGUACACGG--GAAAUUGCACg 2 22 56 77 [ce6:I:4511533-4511554:-] 0.5371 122 0 -18.98 -0.6523 MIMAT0011431 cel-miR-2209a* 172053 Y119C1B.5 cuuccucuucUCACCAAUGUGag | | |||||| aauaaauugaAUUUUUUACACca 3 14 147 169 [ce6:I:4511441-4511463:-] 0.4920 121 0 -6.57 -0.3027 MIMAT0011433 cel-miR-2209c* 172053 Y119C1B.5 uuuguucugcacgccAAUGUGag |||||| aauaaauugaauuuuUUACACca 3 9 147 169 [ce6:I:4511441-4511463:-] 0.4920 120 0 -8.56 -0.3027 MIMAT0011440 cel-miR-2212* 172053 Y119C1B.5 cuaccGAAUAGUUUACGGUGAa ||| || ||||||| | uuucaCUU-UC-AAUGCCAAUa 2 18 131 150 [ce6:I:4511460-4511479:-] 0.5371 125 0 -12.27 -0.1244 MIMAT0011447 cel-miR-2216 172053 Y119C1B.5 cggauGGCUGAAUUUUACACg |: |:| ||||||| uuaauCUUAUUCCAAAUGUGc 2 17 25 45 [ce6:I:4511565-4511585:-] 0.5371 148 7 -11.49 -0.2893 MIMAT0011453 cel-miR-2209b* 172053 Y119C1B.5 cuuccucuuCUCAACA-AUGUGa |:||||| ||||| ugcacacgcGGGUUGUGUACACg 2 14 43 65 [ce6:I:4511545-4511567:-] 0.5371 125 0 -13.23 -0.2411 MIMAT0011453 cel-miR-2209b* 172053 Y119C1B.5 cuuccucuucucaacAAUGUGa |||||| aauaaauugaauuuuUUACACc 2 8 147 168 [ce6:I:4511442-4511463:-] 0.4920 120 6 -4.56 -0.2446 MIMAT0000039 cel-miR-67 172053 Y119C1B.5 agaugagaaagauCCUCCAACACu | :||||||| caaaugugcacacGCGGGUUGUGu 2 12 37 60 [ce6:I:4511550-4511573:-] 0.5371 143 7 -13.53 -0.1193 MIMAT0000059 cel-miR-86 172053 Y119C1B.5 cuGACACCGUUUCGUAAGUGAAu || || : ::|: ||||||| uaCU-UGCUCGGGUUUUCACUUu 2 22 118 139 [ce6:I:4511471-4511492:-] 0.5371 151 7 -11.40 -0.8844 MIMAT0000060 cel-miR-87 172053 Y119C1B.5 cguGUGGACUUUGAAACGAGUg ::|| | | |||||||| aauUGCCGGCA--UUUGCUCAa 2 20 98 117 [ce6:I:4511493-4511512:-] 0.5371 148 7 -14.95 -1.1395 MIMAT0000288 cel-miR-233 172053 Y119C1B.5 ggcguguACG--CGU-AACGAGUu ||| ||| ||||||| uuuaaauUGCCGGCAUUUGCUCAa 2 15 94 117 [ce6:I:4511493-4511516:-] 0.5371 148 7 -17.52 -1.1416 MIMAT0000304 cel-miR-248 172053 Y119C1B.5 acucgcaauaggcACGUGCACAUa |||||||||| guacacgggaaauUGCACGUGUAu 2 12 59 82 [ce6:I:4511528-4511551:-] 0.5371 155 7 -20.82 -0.6595 MIMAT0000699 cel-miR-357 172053 Y119C1B.5 ugAGGACGUUGCUGACCGUAAAu | :| ||: :| ||||||| auUGUUUAAAUUGCCGGCAUUUg 2 22 90 112 [ce6:I:4511498-4511520:-] 0.5371 153 7 -12.72 -0.3603 MIMAT0004220 cel-miR-785 172053 Y119C1B.5 agAUGUGUUUUGUUAAGUGAAu |:| |::: : ||||||| cuUGCUCGGGUU--UUCACUUu 2 21 120 139 [ce6:I:4511471-4511490:-] 0.5371 141 7 -12.82 -0.8647 MIMAT0004225 cel-miR-790 172053 Y119C1B.5 gcgCCACAAGCG---CUCACGGUUc ||| ||| | | |||||| ucgGGUUUUCACUUUCAAUGCCAAu 2 20 125 149 [ce6:I:4511461-4511485:-] 0.5371 122 6 -14.12 -0.1757 MIMAT0004226 cel-miR-791 172053 Y119C1B.5 acggaauagacgccucACGGUUu |||||| ggguuuucacuuucaaUGCCAAu 2 8 127 149 [ce6:I:4511461-4511483:-] 0.5371 120 6 -9.79 -0.1791

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Y119C1B.5; CELE_Y119C1B.5 cel-miR-248 51 84 ACUCGCAAUAG--GC------ACGUGCACAUA- |:|: |:| || ||||||||||| CGGGUUGUGUACACGGGAAAUUGCACGUGUAUA Y119C1B.5; CELE_Y119C1B.5 cel-miR-267 42 69 -ACGU---CGUCUGUGAA--GUGCCC- |||| ||:|:: | |||||| GUGCACACGCGGGUUGUGUACACGGGA Y119C1B.5; CELE_Y119C1B.5 cel-miR-268 101 127 -UGGUUU--GACGAAGAUUAAGAACGG- :||:: :|||| | ||| |||||: UGCCGGCAUUUGCU-C-AAUACUUGCUC Y119C1B.5; CELE_Y119C1B.5 cel-miR-356 90 119 ACUAAACA-----AGCGC-----AACGAGUU- |||| |:|| |||||||| ---AUUGUUUAAAUUGCCGGCAUUUGCUCAAU Y119C1B.5; CELE_Y119C1B.5 cel-miR-357 89 114 -UGAGGACGUUGCUGACCGUAAAU- |:| :| ||: :| |||||||: UAUUGUUUAAAUUGCCGGCAUUUGC Y119C1B.5; CELE_Y119C1B.5 cel-miR-52 48 69 UCGUGCCUUUGUAUACA--UGCCCAC |:|||: |:||| ||||| -ACGCGGGU---UGUGUACACGGGA- Y119C1B.5; CELE_Y119C1B.5 cel-miR-54 50 69 GAGCCUAAUACUUCUAAUGCCCAU |||:||:|| ||||| -GCGGGUUGUGUAC---ACGGGA- Y119C1B.5; CELE_Y119C1B.5 cel-miR-57 45 69 -UGUGUGUCGAGCUAGAUGU-CCCAU ||||:|:| |:| | |||| ||| CACACGCGGGUUG-UGUACACGGGA- Y119C1B.5; CELE_Y119C1B.5 cel-miR-67 30 61 AGAUGAGAAAGAUCC-------UCCAACACU :||:|| :||||||| CUUAUUCCAAAUGUGCACACGCGGGUUGUGU Y119C1B.5; CELE_Y119C1B.5 cel-miR-784 39 62 AGAUGCA----UGCGUCUAACACGGU |:|| ||||:|:|||||: --AAUGUGCACACGCGGGUUGUGUA- Y119C1B.5; CELE_Y119C1B.5 cel-miR-800 103 134 -GCCGUCU----GUUA--AA--GGCUCAAAC ||||| |||| || :||:|||| CCGGCAUUUGCUCAAUACUUGCUCGGGUUUU Y119C1B.5; CELE_Y119C1B.5 cel-miR-87 105 129 CGUGUGGACUU----UGAAACGAGUG :||::|| || ||||||: -GGCAUUUGCUCAAUAC-UUGCUCGG Y119C1B.5; CELE_Y119C1B.5 cel-miR-233 94 117 ggcguguACG--CGU-AACGAGUU ||| ||| |||||||| tttaaatTGCCGGCATTTGCTCAA Y119C1B.5; CELE_Y119C1B.5 cel-miR-248 49 82 aCUCGCAAUA---G-GC------ACGUGCACAUA | | |||:| | || ||||||||||| cGCGGGTTGTGTACACGGGAAATTGCACGTGTAT Y119C1B.5; CELE_Y119C1B.5 cel-miR-267 43 67 ACGU---CGUCUG--UGAAGUGCCC |||| ||:|:: | |||||| TGCACACGCGGGTTGTGTACACGGG Y119C1B.5; CELE_Y119C1B.5 cel-miR-268 102 125 uGGU--UUGACGAAGAUUAAGAACGg ||: | :||| || ||| ||||| gCCGGCATTTGC-TC-AATACTTGCt Y119C1B.5; CELE_Y119C1B.5 cel-miR-52 45 69 ucGUGC-CUUUGUAUACAUGCCCac |||| |:: ::|:| ||||| caCACGCGGGTTGTGTACACGGGaa Y119C1B.5; CELE_Y119C1B.5 cel-miR-54 49 69 GAGCCUAAUACUUCUAAUGCCCau | |||:||:|| | ||||| CGCGGGTTGTGTAC---ACGGGaa Y119C1B.5; CELE_Y119C1B.5 cel-miR-57 46 69 UGUGUGUCGAGCUAGAUGU-CCCau ||||:|:| |:| | |||| ||| ACACGCGGGTTG-TGTACACGGGaa Y119C1B.5; CELE_Y119C1B.5 cel-miR-784 41 62 AGAUGCAUGCGUCUAACACggu | |:| ||||:|:||||| TGTGCACACGCGGGTTGTGtac Y119C1B.5; CELE_Y119C1B.5 cel-miR-800 104 133 GCCGU---C-UGUUA--AA--GGCUCAAAc ||||| | |||| || :||:|||| CGGCATTTGCTCAATACTTGCTCGGGTTTt Y119C1B.5; CELE_Y119C1B.5 cel-miR-87 98 117 cguguGGACUUUGAAACGAGUg || | | |||||||| aattgCCGGCA--TTTGCTCAa Y119C1B.5; CELE_Y119C1B.5 cel-miR-233 110 117 G--GCGUGU-----------------ACG--CGU-AACGAGUU :|:|:| ||| ||| |||||||| ACGUGUAUAUAAUAUAUUGUUUAAAUUGCCGGCAUUUGCUCAAU Y119C1B.5; CELE_Y119C1B.5 cel-miR-248 75 82 A-----------CUCGCAAUAG--GC------ACGUGCACAUA |:|: |:| || ||||||||||| AUGUGCACACGCGGGUUGUGUACACGGGAAAUUGCACGUGUAUA Y119C1B.5; CELE_Y119C1B.5 cel-miR-356 110 117 ACUA------------AACAAG---------CGC-AACGAGUU |||||: || |||||||| ACGUGUAUAUAAUAUAUUGUUUAAAUUGCCGGCAUUUGCUCAAU Y119C1B.5; CELE_Y119C1B.5 cel-miR-357 105 112 UGAGGACGUUGC------------------------UGACCGUAAAU :|||| || :| |||||||: A---UUGCA-CGUGUAUAUAAUAUAUUGUUUAAAUUGCCGGCAUUUGC Y119C1B.5; CELE_Y119C1B.5 cel-miR-67 53 60 AGAUGAGAAAGAUCC-------------------UCCAACACU :||||||| CAUUAUAUUAAUCUUAUUCCAAAUGUGCACACGCGGGUUGUGU Y119C1B.5; CELE_Y119C1B.5 cel-miR-87 110 117 CGUG-----------------------UGGACUUUGAAACGAGUG :|| |||||||| ACGUGUAUAUAAUAUAUUGUUUAAAUUGCCGGCA--UUUGCUCAA

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Y119C1B.5 RAID00251328 cel-miR-791-3p miRNA MIMAT0004226 Y119C1B.5 mRNA 172053 Prediction 0.1828 Y119C1B.5 RAID00721052 cel-miR-87-3p miRNA MIMAT0000060 Y119C1B.5 mRNA 172053 Prediction 0.2202 Y119C1B.5 RAID00878368 cel-miR-248 miRNA MIMAT0000304 Y119C1B.5 mRNA 172053 Prediction 0.2202 Y119C1B.5 RAID01327041 cel-miR-233-3p miRNA MIMAT0000288 Y119C1B.5 mRNA 172053 Prediction 0.1828 Y119C1B.5 RAID02314473 cel-miR-790-5p miRNA MIMAT0004225 Y119C1B.5 mRNA 172053 Prediction 0.1828 Y119C1B.5 RAID03108713 cel-miR-785-3p miRNA MIMAT0004220 Y119C1B.5 mRNA 172053 Prediction 0.1828 Y119C1B.5 RAID03560650 cel-miR-67-3p miRNA MIMAT0000039 Y119C1B.5 mRNA 172053 Prediction 0.1828 Y119C1B.5 RAID03718385 cel-miR-232-3p miRNA MIMAT0000287 Y119C1B.5 mRNA 172053 Prediction 0.1828 Y119C1B.5 RAID03917779 cel-miR-357-3p miRNA MIMAT0000699 Y119C1B.5 mRNA 172053 Prediction 0.1828 Y119C1B.5 RAID03945051 cel-miR-86-5p miRNA MIMAT0000059 Y119C1B.5 mRNA 172053 Prediction 0.1828 Y119C1B.5 RAID03961313 cel-miR-254-3p miRNA MIMAT0000310 Y119C1B.5 mRNA 172053 Prediction 0.1828