DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT035245 cel-miR-50-5p Caenorhabditis elegans ZK688.5 176108 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT035079 cel-miR-58a-3p Caenorhabditis elegans ZK688.5 176108 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT034980 cel-miR-62 Caenorhabditis elegans ZK688.5 176108 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT034361 cel-miR-90-3p Caenorhabditis elegans ZK688.5 176108 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT034125 cel-miR-238-3p Caenorhabditis elegans ZK688.5 176108 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT034100 cel-miR-239a-5p Caenorhabditis elegans ZK688.5 176108 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT034076 cel-miR-239b-5p Caenorhabditis elegans ZK688.5 176108 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT033640 cel-miR-262 Caenorhabditis elegans ZK688.5 176108 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT033461 cel-miR-355-5p Caenorhabditis elegans ZK688.5 176108 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT033371 cel-miR-359 Caenorhabditis elegans ZK688.5 176108 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT033331 cel-lsy-6-3p Caenorhabditis elegans ZK688.5 176108 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT033003 cel-miR-800-3p Caenorhabditis elegans ZK688.5 176108 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT032640 cel-miR-1823-3p Caenorhabditis elegans ZK688.5 176108 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT032626 cel-miR-1828 Caenorhabditis elegans ZK688.5 176108 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT032551 cel-miR-1833 Caenorhabditis elegans ZK688.5 176108 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015102 cel-miR-60* 176108 ZK688.5 uaaaauaccgugagaAGGUCAa |||||| caacuacaaacaauaUCCAGUg 2 8 97 118 [ce6:III:7885348-7885369:-] 0.5076 120 6 -9.05 -0.1172 MIMAT0000315 cel-miR-260 176108 ZK688.5 gaUGUUCUCA-AGCUGUAGUg ||| : | ||||||||| ugACAUCGUUGUCGACAUCAu 2 19 1 21 [ce6:III:7885445-7885465:-] 0.5980 153 7 -17.68 -0.6644 MIMAT0004228 cel-miR-793 176108 ZK688.5 agaCAGAUU---GAUUCUAUGGAgu ||:||: | || |||||| acgGUUUAGGUUCAAAUAUACCUac 3 20 252 276 [ce6:III:7885190-7885214:-] 0.5000 134 0 -11.84 -0.1366 MIMAT0004228 cel-miR-793 176108 ZK688.5 agaCAGAUU---GAUUCUAUGGAgu ||:||: | || |||||| acgGUUUAGGUUCAAAUAUACCUac 3 20 133 157 [ce6:III:7885190-7885214:-] 0.5000 134 0 -11.84 -0.1457 MIMAT0006587 cel-miR-1820 176108 ZK688.5 cuuguaguagcuuuuuGUUAGUUUu :||||||| uucgguggauuaguuuUAAUCAAAa 2 10 165 189 [ce6:III:7885277-7885301:-] 0.5000 141 7 -11.46 -1.0422 MIMAT0006587 cel-miR-1820 176108 ZK688.5 cuuguaguagcuuuuuGUUAGUUUu :||||||| uucgguggauuaguuuUAAUCAAAa 2 10 46 70 [ce6:III:7885277-7885301:-] 0.5000 141 7 -11.46 -1.0462 MIMAT0006590 cel-miR-1823 176108 ZK688.5 aaUGAGGAUUUGUGA-AGGUCAu ||| | ||||| | |||||| caACUAC-AAACAAUAUCCAGUg 2 21 97 118 [ce6:III:7885348-7885369:-] 0.5076 134 6 -17.00 -1.0860 MIMAT0011442 cel-miR-2213 176108 ZK688.5 aauccGUCAGGAGAAU-GUCGAa | || ||| || ||||| ucaauCUGUGCUCCUAUCAGCUa 2 18 343 365 [ce6:III:7885101-7885123:-] 0.5000 125 0 -13.58 -0.9801 MIMAT0011442 cel-miR-2213 176108 ZK688.5 aauccGUCAGGAGAAU-GUCGAa | || ||| || ||||| ucaauCUGUGCUCCUAUCAGCUa 2 18 224 246 [ce6:III:7885101-7885123:-] 0.5000 125 0 -13.58 -0.9983 MIMAT0011454 cel-miR-2209b 176108 ZK688.5 acuUCGUGUUGGC-G-AGUAGAGa | |:: ::|| | ||||||| gacAUCGUUGUCGACAUCAUCUCc 2 20 2 25 [ce6:III:7885441-7885464:-] 0.5980 145 7 -16.71 -0.4975 MIMAT0011455 cel-miR-2218a 176108 ZK688.5 acuccgaauuuUGAACAUCAAAc |:||||||||| uaacuauguucAUUUGUAGUUUg 2 13 302 324 [ce6:III:7885142-7885164:-] 0.5000 156 7 -15.89 -0.9669 MIMAT0011455 cel-miR-2218a 176108 ZK688.5 acuccgaauuuUGAACAUCAAAc |:||||||||| uaacuauguucAUUUGUAGUUUg 2 13 183 205 [ce6:III:7885142-7885164:-] 0.5000 156 7 -15.89 -0.9866 MIMAT0011462 cel-miR-2220 176108 ZK688.5 gacaUUCAGGUGUUUGUUAAcu || | :|| |||||| guucAAAUAUACCUACAAUUaa 3 19 261 282 [ce6:III:7885184-7885205:-] 0.5000 134 0 -6.82 -0.1361 MIMAT0011462 cel-miR-2220 176108 ZK688.5 gacaUUCAGGUGUUUGUUAAcu || | :|| |||||| guucAAAUAUACCUACAAUUaa 3 19 142 163 [ce6:III:7885184-7885205:-] 0.5000 134 0 -6.82 -0.1451 MIMAT0000021 cel-miR-50 176108 ZK688.5 ggGUUCUU-AUGGUCUG-UAUAGu ||| || || || || ||||| auCAACAACUA-CAAACAAUAUCc 2 21 92 114 [ce6:III:7885352-7885374:-] 0.5076 125 0 -7.84 -0.9629 MIMAT0000021 cel-miR-50 176108 ZK688.5 ggguucuuauggucuGUAUAGu |||||| cuacaauuaauuguuCAUAUCu 2 8 273 294 [ce6:III:7885172-7885193:-] 0.5000 120 6 -6.55 -0.2273 MIMAT0000021 cel-miR-50 176108 ZK688.5 ggguucuuauggucuGUAUAGu |||||| cuacaauuaauuguuCAUAUCu 2 8 154 175 [ce6:III:7885172-7885193:-] 0.5000 120 6 -6.55 -0.2410 MIMAT0000034 cel-miR-62 176108 ZK688.5 gacauucgaucuaauGUAUAGu |||||| cuacaauuaauuguuCAUAUCu 2 8 273 294 [ce6:III:7885172-7885193:-] 0.5000 120 6 -6.51 -0.2294 MIMAT0000034 cel-miR-62 176108 ZK688.5 gacauucgaucuaauGUAUAGu |||||| cuacaauuaauuguuCAUAUCu 2 8 154 175 [ce6:III:7885172-7885193:-] 0.5000 120 6 -6.51 -0.2432 MIMAT0000061 cel-miR-90 176108 ZK688.5 uccccGUAAGUUUGU-UGUAUAGu || |:|| :: |||||| accuaCAAUUAAUUGUUCAUAUCu 2 19 271 294 [ce6:III:7885172-7885195:-] 0.5000 121 6 -8.37 -0.2252 MIMAT0000061 cel-miR-90 176108 ZK688.5 uccccGUAAGUUUGU-UGUAUAGu || |:|| :: |||||| accuaCAAUUAAUUGUUCAUAUCu 2 19 152 175 [ce6:III:7885172-7885195:-] 0.5000 121 6 -8.37 -0.2389 MIMAT0000701 cel-miR-359 176108 ZK688.5 aagcaGUCUCUUUCUGGUCACu || | || |||||| aacuaCAAACAAUAUCCAGUGa 2 18 98 119 [ce6:III:7885347-7885368:-] 0.5076 121 6 -12.46 -0.2236 MIMAT0000749 cel-lsy-6 176108 ZK688.5 gcuuuacgcagaguAUGUUUu |||||| acuucaucaacaacUACAAAc 2 8 87 107 [ce6:III:7885359-7885379:-] 0.5076 120 6 -4.46 -0.1160 MIMAT0004227 cel-miR-792 176108 ZK688.5 agacuuucaacuucucUAAAGUu |||||| ucuuauuuauauuuaaAUUUCAu 2 8 413 435 [ce6:III:7885031-7885053:-] 0.5000 120 6 -3.13 -0.2880 MIMAT0004227 cel-miR-792 176108 ZK688.5 agacuuucaacuucucUAAAGUu |||||| ucuuauuuauauuuaaAUUUCAu 2 8 294 316 [ce6:III:7885031-7885053:-] 0.5000 120 6 -3.13 -0.3487

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score ZK688.5 RAID00290217 cel-miR-238-3p miRNA MIMAT0000293 ZK688.5 mRNA 176108 NGS (Next Generation Sequencing) 0.5483 ZK688.5 RAID00318345 cel-miR-50-5p miRNA MIMAT0000021 ZK688.5 mRNA 176108 NGS (Next Generation Sequencing)//CLIP-seq//Prediction 0.7226 ZK688.5 RAID01501815 cel-miR-792-3p miRNA MIMAT0004227 ZK688.5 mRNA 176108 Prediction 0.1828 ZK688.5 RAID01592105 cel-miR-75-3p miRNA MIMAT0000047 ZK688.5 mRNA 176108 CLIP-seq 0.5483 ZK688.5 RAID01669740 cel-miR-1833 miRNA MIMAT0006775 ZK688.5 mRNA 176108 NGS (Next Generation Sequencing) 0.5483 ZK688.5 RAID01766513 cel-miR-800-3p miRNA MIMAT0004235 ZK688.5 mRNA 176108 NGS (Next Generation Sequencing) 0.5483 ZK688.5 RAID01919477 cel-lsy-6-3p miRNA MIMAT0000749 ZK688.5 mRNA 176108 NGS (Next Generation Sequencing)//CLIP-seq//Prediction 0.7226 ZK688.5 RAID01990677 cel-miR-239a-5p miRNA MIMAT0000294 ZK688.5 mRNA 176108 NGS (Next Generation Sequencing) 0.5483 ZK688.5 RAID02070526 cel-miR-62 miRNA MIMAT0000034 ZK688.5 mRNA 176108 NGS (Next Generation Sequencing)//CLIP-seq//Prediction 0.7226 ZK688.5 RAID02287552 cel-miR-239b-5p miRNA MIMAT0000295 ZK688.5 mRNA 176108 NGS (Next Generation Sequencing) 0.5483 ZK688.5 RAID02347642 cel-miR-243-3p miRNA MIMAT0000299 ZK688.5 mRNA 176108 CLIP-seq 0.5483 ZK688.5 RAID02384135 cel-miR-355-5p miRNA MIMAT0000697 ZK688.5 mRNA 176108 NGS (Next Generation Sequencing) 0.5483 ZK688.5 RAID02544025 cel-miR-1823-3p miRNA MIMAT0006590 ZK688.5 mRNA 176108 NGS (Next Generation Sequencing) 0.5483 ZK688.5 RAID02676131 cel-miR-90-3p miRNA MIMAT0000061 ZK688.5 mRNA 176108 NGS (Next Generation Sequencing)//CLIP-seq//Prediction 0.7226 ZK688.5 RAID03351447 cel-miR-359 miRNA MIMAT0000701 ZK688.5 mRNA 176108 NGS (Next Generation Sequencing)//CLIP-seq//Prediction 0.7226 ZK688.5 RAID03534474 cel-miR-1828 miRNA MIMAT0006768 ZK688.5 mRNA 176108 NGS (Next Generation Sequencing) 0.5483 ZK688.5 RAID03831348 cel-miR-58a-3p miRNA MIMAT0000030 ZK688.5 mRNA 176108 NGS (Next Generation Sequencing) 0.5483