DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015091 cel-let-7* 180398 dve-1 caUUCCAUCUUUUAACGUAUCAAGu ||| | | | ||||||| uuAAGUUUUUCACAUCAAUAGUUCc 2 24 56 80 [ce6:X:427609-427633:-] 0.5000 143 7 -7.88 -0.8239 MIMAT0015098 cel-miR-48* 180398 dve-1 acgcucgauccgacCACCUAca |||||| auguuuuaacaaauGUGGAUaa 3 9 771 792 [ce6:X:432051-432072:-] 0.6054 120 0 -7.40 -0.4067 MIMAT0000052 cel-miR-227 180398 dve-1 caagucuuAGUACAGCUUUCga | || ||||||| auuaucuuUAAUUUCGAAAGaa 3 15 32 53 [ce6:X:427636-427657:-] 0.5025 134 0 -9.35 -0.1166 MIMAT0015115 cel-miR-239b* 180398 dve-1 aaAAACGUGUGGU---GUUUUCACg | ||:||| | ||||||| caUGUGUACAGGAGAGAAAAAGUGa 2 21 249 273 [ce6:X:432570-432594:-] 0.4752 147 7 -13.43 -0.9166 MIMAT0015119 cel-miR-247* 180398 dve-1 ccaUUAAUCUUUGAAAAGAGAu |||| |||||||||||| ucaAAUU-UAAACUUUUCUCUg 2 20 506 526 [ce6:X:427163-427183:-] 0.5193 173 7 -17.37 -0.8825 MIMAT0015119 cel-miR-247* 180398 dve-1 ccauuaaucuuugaAAAGAGAu ||||||| ucagugccccacaaUUUCUCUu 2 9 124 145 [ce6:X:427544-427565:-] 0.5056 140 7 -8.20 -0.5674 MIMAT0015119 cel-miR-247* 180398 dve-1 ccauuaaucuuugAAAAGAGau ||||||| aucuugcccaccgUUUUCUCaa 3 10 475 496 [ce6:X:427193-427214:-] 0.5317 125 0 -5.69 -0.1425 MIMAT0000309 cel-miR-253* 180398 dve-1 ccaguCACAAUCACUCCACac || | ||||||||| gcaauGUAUAAGUGAGGUGaa 3 17 712 732 [ce6:X:432111-432131:-] 0.6054 144 0 -19.36 -0.1028 MIMAT0000313 cel-miR-258 180398 dve-1 uuuuccUAAGGAGAGUUUUGg | |::|:||||||: uuuccaACUUUUUUCAAAAUc 2 16 9 29 [ce6:X:427660-427680:-] 0.5050 139 0 -12.01 -0.1099 MIMAT0000313 cel-miR-258 180398 dve-1 uuuuccuAAG-GAGA-GUUUUGg ||| :||| |||||| cgcaucuUUCGUUCUGCAAAACu 2 15 235 257 [ce6:X:427432-427454:-] 0.5442 121 6 -10.13 -0.7418 MIMAT0000315 cel-miR-260 180398 dve-1 gauGUUCUCAAGCUGUAGUg :||| ||: |||||| cauUAAGUUUUUCACAUCAa 2 18 54 73 [ce6:X:427616-427635:-] 0.5000 129 6 -11.02 -0.1807 MIMAT0000315 cel-miR-260 180398 dve-1 gauGUUCUCAAGCUGUA-GUg ||: | ||:||||| || auuCAGAAUUUUGACAUACAa 2 18 569 589 [ce6:X:427100-427120:-] 0.5193 125 0 -11.44 -0.8200 MIMAT0000316 cel-miR-261 180398 dve-1 gcacUUUUGAU-UUUUCGAu || || : ||||||| cacaAAUACCGCAAAAGCUu 2 16 520 539 [ce6:X:432304-432323:-] 0.4506 146 7 -6.00 -0.1535 MIMAT0000317 cel-miR-262 180398 dve-1 uaguCUUUUGUAGCUCUUUg ||| :: |:|||||| auuuGAAUGUUUUGAGAAA- 2 17 608 626 [ce6:X:427063-427081:-] 0.5193 140 6 -8.28 -0.1334 MIMAT0000322 cel-miR-266 180398 dve-1 cgaaACGGUUUCAGAACGGa | :||| ||||||| ccaaUAUCAA--UCUUGCCc 2 17 466 483 [ce6:X:427206-427223:-] 0.5442 145 7 -12.45 -0.9812 MIMAT0000323 cel-miR-267 180398 dve-1 acgUCGUCUGUG--AAGUGCCc |||| | || ||||||| gaaAGCACAAACCAUUCACGGa 2 18 579 600 [ce6:X:432243-432264:-] 0.4468 156 7 -17.79 -0.7133 MIMAT0000324 cel-miR-268 180398 dve-1 ugguuUGACGAAGAUUAAGA-ACGg || | ||| |||||| ||| gaucuACGGAUUCAAAUUCUGUGCa 2 20 690 714 [ce6:X:432129-432153:-] 0.6054 135 0 -13.41 -1.2428 MIMAT0015121 cel-miR-360* 180398 dve-1 acuGGCAUUGUUGCCAGUGUu || | : || |||||| uuuCCCUUCUUACCGUCACAc 2 19 403 423 [ce6:X:427266-427286:-] 0.5442 122 6 -12.39 -0.1297 MIMAT0015241 cel-miR-797* 180398 dve-1 uaAAGUGUCUUUGGUUACUUUu ||:|: ||:|||||||||| uuUUUAU-GAGACCAAUGAAAg 2 21 563 583 [ce6:X:432260-432280:-] 0.4487 174 7 -22.35 -0.1232 MIMAT0005033 cel-miR-1020 180398 dve-1 gacuUUCA--CAGUGUCUUAUUa |||| | :: ||||||| guauAAGUGAGGUGAAGAAUAAa 2 18 717 739 [ce6:X:432104-432126:-] 0.6054 148 7 -11.09 -0.9523 MIMAT0006586 cel-miR-1819 180398 dve-1 aggUAGU--UCGAGU---UAGUAAGGu |||| | :||| ||||||| aaaAUCACUACUUCAUUUUUCAUUCCa 2 20 157 183 [ce6:X:427506-427532:-] 0.5056 145 7 -16.15 -1.1678 MIMAT0006587 cel-miR-1820 180398 dve-1 cuuguaguagcuuuuuGUUAGUUuu ||||||| auuuccuucuuucuuuCAAUCAAca 3 10 310 334 [ce6:X:427355-427379:-] 0.5442 125 0 -5.59 -0.1252 MIMAT0015266 cel-miR-1822* 180398 dve-1 cgGCUAUCGAAAGGGUCUCUUUga :|| |:||| |||||| uuUGAAUGUUUU----GAGAAA-- 3 23 609 626 [ce6:X:427063-427080:-] 0.5193 125 0 -7.79 -0.1033 MIMAT0006769 cel-miR-1829a 180398 dve-1 uuaucucuUUAAGGUUACCAAc |:||::||||||| gaucacauAGUUUUAAUGGUUu 2 15 374 395 [ce6:X:427294-427315:-] 0.5442 158 7 -12.73 -1.1342 MIMAT0011426 cel-miR-2207* 180398 dve-1 acacaCGUAA--CUCGGACACGUa | ||| | :||||||| ucuacGGAUUCAAAUUCUGUGCAa 2 18 692 715 [ce6:X:432128-432151:-] 0.6054 144 7 -11.48 -1.2659 MIMAT0011443 cel-miR-2214* 180398 dve-1 ggguaacUGAG-GCCUGGCUUa |:|| ||||||||| acaaaccAUUCACGGACCGAAu 2 15 585 606 [ce6:X:432237-432258:-] 0.4468 157 7 -25.67 -0.2669 MIMAT0011444 cel-miR-2214 180398 dve-1 uugcggccAGUU--CAACAACAGUUac |||| || ||||||| ccguuuucUCAAUUUUUUUUGUCAAau 3 18 485 511 [ce6:X:427178-427204:-] 0.5193 136 0 -10.10 -0.1587 MIMAT0011444 cel-miR-2214 180398 dve-1 uugcgGCC--AGUUCAACAACA-GUUAc ||| |||| || ||| |||| aucuaCGGAUUCAAAUU-CUGUGCAAUg 2 21 691 717 [ce6:X:432126-432152:-] 0.6054 121 0 -14.68 -1.0397 MIMAT0011447 cel-miR-2216 180398 dve-1 cgGAUGGCUGAAU--UUUACACg | | :| :||| ||||||| ucCCAAUGUUUUAACAAAUGUGg 2 20 766 788 [ce6:X:432055-432077:-] 0.6054 150 7 -11.85 -0.7473 MIMAT0011448 cel-miR-2216* 180398 dve-1 uccgUGUAAAAUU-----CAUCUAUc |::|||||| ||:|||| cccaAUGUUUUAACAAAUGUGGAUAa 2 18 767 792 [ce6:X:432051-432076:-] 0.6054 136 0 -7.44 -0.1541 MIMAT0011450 cel-miR-1832b 180398 dve-1 uagucgcuUAGCGAG-ACGGGUGa ||| || ||||||| cuuccaauAUCAAUCUUGCCCACc 2 16 463 486 [ce6:X:427203-427226:-] 0.5317 150 7 -16.94 -0.9694 MIMAT0011454 cel-miR-2209b 180398 dve-1 acuucGUGUUGGCGAGUAGAGa || |:: :||||||: cuuucCAAUAUUAUUCAUCUUa 2 18 426 447 [ce6:X:427242-427263:-] 0.5442 133 0 -9.91 -0.3546 MIMAT0011459 cel-miR-2219* 180398 dve-1 cugcuacacgcucuCUUUCGACa |||||||| aagaauaaacuccuGAAAGCUGc 2 10 731 753 [ce6:X:432090-432112:-] 0.6054 145 7 -11.82 -0.6410 MIMAT0011460 cel-miR-2219 180398 dve-1 gaAGUCGAA-AGGGAGCGUGAAGc | | :|| | :|| |||||| cuUAAUUUUAUGUCUACCACUUCc 2 22 444 467 [ce6:X:427222-427245:-] 0.5442 124 6 -10.79 -0.1926 MIMAT0014446 cel-miR-2953-5p 180398 dve-1 uaaAAGUGCUUGUGAAGA-CAu ||| || |||||| || ucgUUCUGCAAAACUUCUAGUc 2 19 243 264 [ce6:X:427425-427446:-] 0.5442 122 0 -8.49 -0.4309 MIMAT0000004 cel-miR-2 180398 dve-1 cguguAGUUUCGACCGACACUAu |: | | |||||||| cauuuUUCAUUCCAGCUGUGAUu 2 19 170 192 [ce6:X:427497-427519:-] 0.5056 146 7 -14.33 -0.5270 MIMAT0000014 cel-miR-43 180398 dve-1 cgcugucguucauUUGACACUAu |:||||||| cauuuuucauuccAGCUGUGAUu 2 11 170 192 [ce6:X:427497-427519:-] 0.5056 146 7 -12.52 -0.5270 MIMAT0000015 cel-miR-44 180398 dve-1 ucgacuuacacaGAGAUCAGu :||||||| guucugcaaaacUUCUAGUCg 2 10 245 265 [ce6:X:427424-427444:-] 0.5442 141 7 -15.40 -0.6421 MIMAT0000015 cel-miR-44 180398 dve-1 ucgaCUUACACAGAGAUCAGu |:: | |:||||||| uuugGGGCGCAUUUCUAGUCa 2 18 332 352 [ce6:X:432491-432511:-] 0.3784 149 7 -17.32 -0.6930 MIMAT0000016 cel-miR-45 180398 dve-1 ucgacuuacacaGAGAUCAGu :||||||| guucugcaaaacUUCUAGUCg 2 10 245 265 [ce6:X:427424-427444:-] 0.5442 141 7 -15.40 -0.6421 MIMAT0000016 cel-miR-45 180398 dve-1 ucgaCUUACACAGAGAUCAGu |:: | |:||||||| uuugGGGCGCAUUUCUAGUCa 2 18 332 352 [ce6:X:432491-432511:-] 0.3784 149 7 -17.32 -0.6930 MIMAT0000033 cel-miR-61 180398 dve-1 cuacuCAUUGCCAAGAUCAGu | || |||||||| guucuGCAAAACUUCUAGUCg 2 17 245 265 [ce6:X:427424-427444:-] 0.5442 148 7 -12.62 -0.6384 MIMAT0000033 cel-miR-61 180398 dve-1 cuACUCAUUGCCAAGAUCAGu ||:| :| |||||||| uuUGGGGCGCAUUUCUAGUCa 2 20 332 352 [ce6:X:432491-432511:-] 0.3784 155 7 -17.41 -0.6930 MIMAT0000043 cel-miR-71 180398 dve-1 agugauggguacAGAAAGu |||||| gcuuucuuugucUCUUUCa 2 8 345 363 [ce6:X:427326-427344:-] 0.5442 120 6 -11.80 -0.1483 MIMAT0000044 cel-miR-72 180398 dve-1 agucGAUACGGUUGUAGAACGGa | || :|| |||||||| cuucCAAUAUCA--AUCUUGCCc 2 20 463 483 [ce6:X:427206-427226:-] 0.5442 152 7 -16.58 -1.0013 MIMAT0000045 cel-miR-73 180398 dve-1 ugacuUGACGG--AUG--UAGAACGGu ||| || ||: |||||||| cuaccACUUCCAAUAUCAAUCUUGCCc 2 19 457 483 [ce6:X:427206-427232:-] 0.5442 152 7 -14.53 -1.0071 MIMAT0000046 cel-miR-74 180398 dve-1 acaucUGACGGUAA-----AGAACGGu ||| ||| | ||||||| cuaccACUUCCAAUAUCAAUCUUGCCc 2 18 457 483 [ce6:X:427206-427232:-] 0.5442 144 7 -13.10 -1.0071 MIMAT0000047 cel-miR-75 180398 dve-1 acuucggccaaccaUCGAAAUu ||||||| acaaauaccgcaaaAGCUUUAg 2 9 521 542 [ce6:X:432301-432322:-] 0.4506 140 7 -12.87 -0.2729 MIMAT0000051 cel-miR-79 180398 dve-1 ucgaaaccauuggaUCGAAAUa ||||||| acaaauaccgcaaaAGCUUUAg 2 9 521 542 [ce6:X:432301-432322:-] 0.4506 140 7 -8.57 -0.2729 MIMAT0000290 cel-miR-235 180398 dve-1 aguccggccccucuCACGUUAu ||||||| cggauucaaauucuGUGCAAUg 2 9 696 717 [ce6:X:432126-432147:-] 0.6054 140 7 -10.98 -0.9356 MIMAT0000291 cel-miR-236 180398 dve-1 ucgcaGUAAUGGACUGUCAUAAu ::|| |||| |||||| ----gUGUUUCCUG-AAGUAUUc 2 19 1 18 [ce6:X:432825-432842:-] 0.5689 128 6 -15.91 -0.1176 MIMAT0000300 cel-miR-244 180398 dve-1 guauGGUGAAA-CAUGUUG-GUUUCu || |||| | || || ||||| acauCCUCUUUAGAACUACUCAAAGa 2 21 155 180 [ce6:X:432663-432688:-] 0.4752 131 0 -18.26 -1.0352 MIMAT0000303 cel-miR-247 180398 dve-1 ucuucuCUUAUCCGAGAUCAGu | | | :||||||| cguucuGCAAAACUUCUAGUCg 2 17 244 265 [ce6:X:427424-427445:-] 0.5442 144 7 -12.26 -0.6421 MIMAT0000303 cel-miR-247 180398 dve-1 ucuucucuuauccGAGAUCAGu :||||||| uuuuggggcgcauUUCUAGUCa 2 10 331 352 [ce6:X:432491-432512:-] 0.4268 141 7 -15.90 -0.7948 MIMAT0000306 cel-miR-250 180398 dve-1 acgguuGUCAACU-GACACUAa || | | ||||||| auuuuuCAUUCCAGCUGUGAUu 2 16 171 192 [ce6:X:427497-427518:-] 0.5056 142 7 -13.14 -0.5235 MIMAT0000307 cel-miR-251 180398 dve-1 uuaUUCUCGCCGUGGUGAUGAAuu |||||| |:|||||||| acgAAGAGCAAAAUCACUACUUca 3 22 148 171 [ce6:X:427518-427541:-] 0.5056 157 0 -22.43 -0.1314 MIMAT0000308 cel-miR-252 180398 dve-1 aauggaCGCCGUGAUGAUGAAua || |: ||||||| cgaagaGCAAAAUCACUACUUca 3 18 149 171 [ce6:X:427518-427540:-] 0.5056 129 0 -9.38 -0.1314 MIMAT0004216 cel-miR-255 180398 dve-1 gacauuuuuuaGAGAAGUCAAa ||:||||||| acuuuucucugCUUUUCAGUUg 2 12 516 537 [ce6:X:427152-427173:-] 0.5193 151 7 -12.71 -0.7275 MIMAT0000699 cel-miR-357 180398 dve-1 ugAGGACGUUGCUGACCGUAAAu ||: ::|: :|||||||| auUCUAUUGAUAUUUGGCAUUUa 2 22 475 497 [ce6:X:432346-432368:-] 0.4168 153 7 -16.56 -1.1000 MIMAT0004220 cel-miR-785 180398 dve-1 agauguGUUUUGUUAAGU-GAAu ||| |: ||||| ||| acuuucCAAUAUUAUUCAUCUUa 2 17 425 447 [ce6:X:427242-427264:-] 0.5442 124 0 -10.19 -1.2964 MIMAT0004225 cel-miR-790 180398 dve-1 gcgccacaagcgcucACGGUUc |||||| cuucagcccuuuauaUGCCAAa 2 8 540 561 [ce6:X:427128-427149:-] 0.5193 120 6 -13.36 -0.1410 MIMAT0004226 cel-miR-791 180398 dve-1 acggaauagacgccucACGGUUu |||||| gcuucagcccuuuauaUGCCAAa 2 8 539 561 [ce6:X:427128-427150:-] 0.5193 120 6 -11.56 -0.1410 MIMAT0004232 cel-miR-797 180398 dve-1 agaaGAGU-AACACUAA---CGACACUAu :||| || | ||| |||||||| cuacUUCAUUUUUCAUUCCAGCUGUGAUu 2 22 164 192 [ce6:X:427497-427525:-] 0.5056 159 7 -19.12 -0.5305

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score dve-1 RAID00146851 cel-miR-43-3p miRNA MIMAT0000014 dve-1 mRNA 180398 CLIP-seq//Prediction 0.6308 dve-1 RAID00197873 cel-miR-73-3p miRNA MIMAT0000045 dve-1 mRNA 180398 Prediction 0.2202 dve-1 RAID00379469 cel-miR-797-5p miRNA MIMAT0004232 dve-1 mRNA 180398 CLIP-seq//Prediction 0.6308 dve-1 RAID00803876 cel-miR-251 miRNA MIMAT0000307 dve-1 mRNA 180398 CLIP-seq//Prediction 0.6308 dve-1 RAID01080740 cel-miR-247-3p miRNA MIMAT0000303 dve-1 mRNA 180398 CLIP-seq//Prediction 0.6478 dve-1 RAID01435568 cel-miR-72-5p miRNA MIMAT0000044 dve-1 mRNA 180398 CLIP-seq//Prediction 0.6478 dve-1 RAID01495660 cel-miR-79-3p miRNA MIMAT0000051 dve-1 mRNA 180398 Prediction 0.2202 dve-1 RAID01547721 cel-miR-252-5p miRNA MIMAT0000308 dve-1 mRNA 180398 CLIP-seq//Prediction 0.6308 dve-1 RAID01648218 cel-miR-269 miRNA MIMAT0000325 dve-1 mRNA 180398 Prediction 0.1828 dve-1 RAID01874681 cel-miR-255-3p miRNA MIMAT0004216 dve-1 mRNA 180398 Prediction 0.1828 dve-1 RAID02200037 cel-miR-268 miRNA MIMAT0000324 dve-1 mRNA 180398 CLIP-seq 0.5483 dve-1 RAID02268289 cel-miR-71-5p miRNA MIMAT0000043 dve-1 mRNA 180398 CLIP-seq//Prediction 0.6478 dve-1 RAID02529486 cel-miR-45-3p miRNA MIMAT0000016 dve-1 mRNA 180398 CLIP-seq//Prediction 0.6478 dve-1 RAID02546663 cel-miR-75-3p miRNA MIMAT0000047 dve-1 mRNA 180398 Prediction 0.2202 dve-1 RAID02728336 cel-miR-791-3p miRNA MIMAT0004226 dve-1 mRNA 180398 Prediction 0.1828 dve-1 RAID02813264 cel-miR-250-3p miRNA MIMAT0000306 dve-1 mRNA 180398 CLIP-seq//Prediction 0.6308 dve-1 RAID02950954 cel-miR-357-3p miRNA MIMAT0000699 dve-1 mRNA 180398 Prediction 0.1828 dve-1 RAID03072295 cel-miR-236-3p miRNA MIMAT0000291 dve-1 mRNA 180398 Prediction 0.1828 dve-1 RAID03159653 cel-miR-2-3p miRNA MIMAT0000004 dve-1 mRNA 180398 CLIP-seq//Prediction 0.6308 dve-1 RAID03334047 cel-miR-266 miRNA MIMAT0000322 dve-1 mRNA 180398 Prediction 0.1828 dve-1 RAID03355335 cel-miR-44-3p miRNA MIMAT0000015 dve-1 mRNA 180398 CLIP-seq//Prediction 0.6478 dve-1 RAID03427168 cel-miR-74-3p miRNA MIMAT0000046 dve-1 mRNA 180398 Prediction 0.2202 dve-1 RAID03497173 cel-miR-785-3p miRNA MIMAT0004220 dve-1 mRNA 180398 Prediction 0.1828 dve-1 RAID03700046 cel-miR-61-3p miRNA MIMAT0000033 dve-1 mRNA 180398 CLIP-seq//Prediction 0.6559 dve-1 RAID03772593 cel-let-7-5p miRNA MIMAT0000001 dve-1 mRNA 180398 CLIP-seq 0.5483 dve-1 RAID03877600 cel-miR-265 miRNA MIMAT0000321 dve-1 mRNA 180398 CLIP-seq 0.5483 dve-1 RAID03920847 cel-miR-235-3p miRNA MIMAT0000290 dve-1 mRNA 180398 Prediction 0.1828 dve-1 RAID03956277 cel-miR-790-5p miRNA MIMAT0004225 dve-1 mRNA 180398 Prediction 0.1828 dve-1 RAID03992834 cel-miR-1-3p miRNA MIMAT0000003 dve-1 mRNA 180398 CLIP-seq 0.5483 dve-1 RAID04019214 cel-miR-244-5p miRNA MIMAT0000300 dve-1 mRNA 180398 Prediction 0.1828