DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015112 cel-miR-229* 173987 ZK1248.11 gauacuguGGGCUAUGGA-AAGa |:| |||||| ||| cuucacuuCUCAAUACCUCUUCc 2 15 71 93 [ce6:II:5827607-5827629:-] 0.5819 122 0 -11.51 -1.1762 MIMAT0015240 cel-miR-788* 173987 ZK1248.11 gcUA-AGAUUAGGUAAAGg || ||| | :|||||| ucAUCUCUUAAUCAUUUCa 2 17 23 41 [ce6:II:5827659-5827677:-] 0.5819 139 6 -9.11 -0.6854 MIMAT0015240 cel-miR-788* 173987 ZK1248.11 gcuAAGAUUAGGUAAAGg | :|| ||:||||| aucUCUUACUCUAUUUCa 2 16 47 64 [ce6:II:5827636-5827653:-] 0.5819 139 0 -9.48 -0.1006 MIMAT0015240 cel-miR-788* 173987 ZK1248.11 gcuaagauuagGUAAAGg |||||| accucuuccugCAUUUCa 2 8 85 102 [ce6:II:5827598-5827615:-] 0.5819 120 6 -7.36 -0.2351 MIMAT0004228 cel-miR-793 173987 ZK1248.11 agacagauuGAUUCUAUGGAGu || | ||||||| acuucacuuCUCA-AUACCUCu 2 14 70 90 [ce6:II:5827610-5827630:-] 0.5819 143 7 -12.10 -1.1077 MIMAT0005031 cel-miR-1018 173987 ZK1248.11 gacAUUCAGGUUACUAGAGAGa ||| |::|:| ||||||: gacUAAUUUUAGUCAUCUCUUa 2 20 11 32 [ce6:II:5827668-5827689:-] 0.5819 151 0 -10.07 -0.1945 MIMAT0005031 cel-miR-1018 173987 ZK1248.11 gacAUUCAGGU-U-ACUAGAGAGa | | |:|| | ||||||||: uaaUCAUUUCAUAUUGAUCUCUUa 2 20 31 54 [ce6:II:5827646-5827669:-] 0.5819 141 0 -12.92 -0.1975 MIMAT0005523 cel-miR-1022 173987 ZK1248.11 cuaccgcaGGAUUGUUACUAGAa ::| |:| |||||| cuuaaucaUUUCAUAUUGAUCUc 2 16 29 51 [ce6:II:5827649-5827671:-] 0.5819 123 6 -7.92 -0.2771 MIMAT0006586 cel-miR-1819 173987 ZK1248.11 agGUAGUUCGAGUUAGUAAGGu |||| ||:|||||||:| guCAUC--UCUUAAUCAUUUCa 2 21 22 41 [ce6:II:5827659-5827678:-] 0.5819 149 0 -22.32 -0.3255 MIMAT0006776 cel-miR-1834 173987 ZK1248.11 aaccUAGAGUUACCAACUAGAGa ||:|| || |||||||| aaucAUUUC-AU-AUUGAUCUCu 2 20 32 52 [ce6:II:5827648-5827668:-] 0.5819 155 7 -16.44 -1.2699 MIMAT0011432 cel-miR-2209a 173987 ZK1248.11 acaucacauuggcGACUAGAGa :||||||| uaaucauuucauaUUGAUCUCu 2 10 31 52 [ce6:II:5827648-5827669:-] 0.5819 141 7 -12.75 -1.2709 MIMAT0011454 cel-miR-2209b 173987 ZK1248.11 acuucguguuggcgAGUAGAGa ||||||| augacuaauuuuagUCAUCUCu 2 9 9 30 [ce6:II:5827670-5827691:-] 0.5819 140 7 -13.73 -1.1258 MIMAT0011454 cel-miR-2209b 173987 ZK1248.11 acuucguguuggcgAGUAGAGa ||||:|| uagucaucucuuaaUCAUUUCa 2 9 20 41 [ce6:II:5827659-5827680:-] 0.5819 124 0 -10.64 -0.1533 MIMAT0011460 cel-miR-2219 173987 ZK1248.11 gaAGUCGAAAGGGAGCGUGAAGc ||| :|||| || |||||| uuUCA-UUUUCACU-UCACUUCu 2 22 60 80 [ce6:II:5827620-5827640:-] 0.5819 133 6 -16.49 -0.1216 MIMAT0011463 cel-miR-2221 173987 ZK1248.11 ugaucgccagaccauAGUGAAc |||||| uacucuauuucauuuUCACUUc 2 8 53 74 [ce6:II:5827626-5827647:-] 0.5819 120 6 -5.54 -0.1568 MIMAT0011463 cel-miR-2221 173987 ZK1248.11 ugaucgccagaccauAGUGAAc |||||| accucuuccugcauuUCACUUc 2 8 85 106 [ce6:II:5827594-5827615:-] 0.5819 120 6 -8.22 -0.3385 MIMAT0000030 cel-miR-58 173987 ZK1248.11 uaacggcAUGACUUGCUAGAGu | | | :|||||| uaaucauUUCAUAUUGAUCUCu 2 16 31 52 [ce6:II:5827648-5827669:-] 0.5819 127 6 -8.83 -0.2524 MIMAT0000053 cel-miR-80 173987 ZK1248.11 agccgAAAGUUGAUUACUAGAGu ||||| || ||||||| aaucaUUUCA--UAUUGAUCUCu 2 19 32 52 [ce6:II:5827648-5827668:-] 0.5819 159 7 -12.96 -1.2689 MIMAT0000054 cel-miR-81 173987 ZK1248.11 ugaucgAAAGUGCUACUAGAGu |||||: ||||||| uaaucaUUUCAUAUUGAUCUCu 2 17 31 52 [ce6:II:5827648-5827669:-] 0.5819 160 7 -15.62 -1.2669 MIMAT0000055 cel-miR-82 173987 ZK1248.11 ugaccgAAAGUGCUACUAGAGu |||||: ||||||| uaaucaUUUCAUAUUGAUCUCu 2 17 31 52 [ce6:II:5827648-5827669:-] 0.5819 160 7 -15.62 -1.2669 MIMAT0000059 cel-miR-86 173987 ZK1248.11 cugacaccguuuCGU-AAGUGAAu ||| ||||||| auaccucuuccuGCAUUUCACUUc 2 12 83 106 [ce6:II:5827594-5827617:-] 0.5819 146 7 -9.24 -1.2229 MIMAT0000059 cel-miR-86 173987 ZK1248.11 cugacaccguuucGU-AAGUGAAu || ||||||| ucuauuucauuuuCACUUCACUUc 2 11 56 79 [ce6:II:5827621-5827644:-] 0.5819 141 7 -7.49 -0.9548 MIMAT0000287 cel-miR-232 173987 ZK1248.11 aguggcgucaauucuACGUAAAu ||||||| cucaauaccucuuccUGCAUUUc 2 9 79 101 [ce6:II:5827599-5827621:-] 0.5819 140 7 -8.57 -0.8706 MIMAT0000699 cel-miR-357 173987 ZK1248.11 ugaggacguugcugacCGUAAAu |||||| cucaauaccucuuccuGCAUUUc 2 8 79 101 [ce6:II:5827599-5827621:-] 0.5819 120 6 -10.88 -0.1119 MIMAT0004220 cel-miR-785 173987 ZK1248.11 agauguguuuUGUUAAGUGAAu :|| ||||||| accucuuccuGCAUUUCACUUc 2 13 85 106 [ce6:II:5827594-5827615:-] 0.5819 148 7 -10.57 -1.2215 MIMAT0004220 cel-miR-785 173987 ZK1248.11 agauguguuuuGUUAAGUGAAu || ||||||| uauuucauuuuCACUUCACUUc 2 12 58 79 [ce6:II:5827621-5827642:-] 0.5819 147 7 -9.67 -0.9485 MIMAT0004227 cel-miR-792 173987 ZK1248.11 agacuuucaacuucucUAAAGUu |||||| uagucaucucuuaaucAUUUCAu 2 8 20 42 [ce6:II:5827658-5827680:-] 0.5819 120 6 -2.74 -0.4622 MIMAT0004227 cel-miR-792 173987 ZK1248.11 agacuuucaacuucucUAAAGUu |||||| auugaucucuuacucuAUUUCAu 2 8 43 65 [ce6:II:5827635-5827657:-] 0.5819 120 6 -5.73 -0.1451

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score ZK1248.11 RAID00554680 cel-miR-232-3p miRNA MIMAT0000287 ZK1248.11 mRNA 173987 Prediction 0.1828 ZK1248.11 RAID00748007 cel-miR-357-3p miRNA MIMAT0000699 ZK1248.11 mRNA 173987 Prediction 0.1828 ZK1248.11 RAID00766416 cel-miR-86-5p miRNA MIMAT0000059 ZK1248.11 mRNA 173987 Prediction 0.1828 ZK1248.11 RAID00997359 cel-miR-81-3p miRNA MIMAT0000054 ZK1248.11 mRNA 173987 Prediction 0.2202 ZK1248.11 RAID02654305 cel-miR-82-3p miRNA MIMAT0000055 ZK1248.11 mRNA 173987 Prediction 0.2381 ZK1248.11 RAID02786186 cel-miR-792-3p miRNA MIMAT0004227 ZK1248.11 mRNA 173987 Prediction 0.1828 ZK1248.11 RAID02930897 cel-miR-58a-3p miRNA MIMAT0000030 ZK1248.11 mRNA 173987 Prediction 0.1828 ZK1248.11 RAID03043501 cel-miR-4813-3p miRNA MIMAT0020001 ZK1248.11 mRNA 173987 Prediction 0.1828 ZK1248.11 RAID03396108 cel-miR-80-3p miRNA MIMAT0000053 ZK1248.11 mRNA 173987 Prediction 0.2202 ZK1248.11 RAID03972359 cel-miR-785-3p miRNA MIMAT0004220 ZK1248.11 mRNA 173987 Prediction 0.1828