DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015119 cel-miR-247* 176575 Y47D3B.11 ccauuaaucuUUGAAAAGAGAu |::|||||||| uucuucucccAGUUUUUCUCUu 2 13 46 67 [ce6:III:11462448-11462469:+] 0.5709 152 7 -11.00 -1.0559 MIMAT0000313 cel-miR-258 176575 Y47D3B.11 uuuUCCUAAG-GAGAGUUUUgg || || | || |||||| gccAGAAUACUCUAUCAAAAaa 3 19 8 29 [ce6:III:11462410-11462431:+] 0.5709 137 0 -7.27 -0.2408 MIMAT0000322 cel-miR-266 176575 Y47D3B.11 cgaaacgguuucAGAACGga |||||| aucacauucucuUCUUGCau 3 9 254 273 [ce6:III:11462656-11462675:+] 0.5860 120 0 -6.92 -0.1207 MIMAT0000324 cel-miR-268 176575 Y47D3B.11 ugGUUUGACGAAGAUUAAGAACGg ||| | |||| ||||||| guCAAUCACAUUCU-CUUCUUGCa 2 23 250 272 [ce6:III:11462652-11462674:+] 0.5860 156 7 -15.01 -1.1390 MIMAT0000325 cel-miR-269 176575 Y47D3B.11 ucaaaacggucucAGAACGg |||||| aaucacauucucuUCUUGCa 2 8 253 272 [ce6:III:11462655-11462674:+] 0.5860 120 6 -7.04 -0.1939 MIMAT0000328 cel-miR-272 176575 Y47D3B.11 guuUGUGGGUACGGAUGu |: ::::||||||| ggcAUUUUUGUGCCUACg 2 16 153 170 [ce6:III:11462555-11462572:+] 0.4797 147 7 -16.71 -0.4042 MIMAT0000328 cel-miR-272 176575 Y47D3B.11 guuuguggguACGGAUgu |||||| guggauuaauUGCCUAaa 3 9 170 187 [ce6:III:11462572-11462589:+] 0.4797 120 0 -8.27 -0.1256 MIMAT0015240 cel-miR-788* 176575 Y47D3B.11 gcuAAGAUU--A-GGUAAAGg ||:||: | ||||||: uuuUUUUAGACUACCAUUUUu 2 16 310 330 [ce6:III:11462712-11462732:+] 0.5457 129 0 -8.30 -0.1762 MIMAT0005031 cel-miR-1018 176575 Y47D3B.11 gacauucaGGUUACUAGAGAGa |: :| ||||||| gugccuugCUCGUCAUCUCUCc 2 15 74 95 [ce6:III:11462476-11462497:+] 0.5709 146 7 -11.81 -0.3681 MIMAT0005033 cel-miR-1020 176575 Y47D3B.11 gacUUUCACAGUGUCUUAUua ||| | | ||||||| --aAAAUUAGC-CAGAAUAcu 3 19 1 18 [ce6:III:11462403-11462420:+] 0.5709 132 0 -6.61 -0.1948 MIMAT0005033 cel-miR-1020 176575 Y47D3B.11 gacUUUCACAGUGUC-UUAUUa :|||| || :|| ||||| cuaGAAGUUUC-UAGUAAUAA- 2 19 342 361 [ce6:III:11462744-11462763:+] 0.5027 124 0 -7.54 -0.9840 MIMAT0006587 cel-miR-1820 176575 Y47D3B.11 cuUGUAGUAGCUUUU-U--GUUAGUUUu | ||:| | |:|| | | |||||| -aAAAUUAGCCAGAAUACUCUAUCAAAa 2 24 1 27 [ce6:III:11462403-11462429:+] 0.5709 129 6 -8.77 -0.2600 MIMAT0011454 cel-miR-2209b 176575 Y47D3B.11 acuuCGUGUUGGCGAGUAGAGa || : :|: ||||||| ucguGCCUUGCUCGUCAUCUCu 2 19 72 93 [ce6:III:11462474-11462495:+] 0.5709 146 7 -17.81 -0.3010 MIMAT0011455 cel-miR-2218a 176575 Y47D3B.11 acuccgaauuuugaacAUCAAAc |||||| uuuuucuguuguuuuuUAGUUUu 2 8 289 311 [ce6:III:11462691-11462713:+] 0.5860 120 6 -5.54 -0.3330 MIMAT0011461 cel-miR-2220* 176575 Y47D3B.11 cuAUUUAU-CAAAUACCAGAAUg ||| |: | || |||||| auUAAUUGCCUAAAUUGUCUUAa 2 21 174 196 [ce6:III:11462576-11462598:+] 0.4797 123 6 -5.75 -0.1178 MIMAT0014446 cel-miR-2953-5p 176575 Y47D3B.11 uaaaagugcuUGUGAAGACAu |: :|||||| auacauuuucAUUUUUCUGUu 2 12 278 298 [ce6:III:11462680-11462700:+] 0.5860 127 6 -12.97 -0.2233 MIMAT0000021 cel-miR-50 176575 Y47D3B.11 ggguucuuauggucuGUAUAGu |||||| ucuaucaaaaaauauCAUAUCa 2 8 18 39 [ce6:III:11462420-11462441:+] 0.5709 120 6 -10.60 -0.2407 MIMAT0000030 cel-miR-58 176575 Y47D3B.11 uaacggcaugacuuGCUAGAGu ||||||| caucucuccaacccCGAUCUCu 2 9 87 108 [ce6:III:11462489-11462510:+] 0.5709 140 7 -12.16 -0.4987 MIMAT0000034 cel-miR-62 176575 Y47D3B.11 gacauucgaucuaauGUAUAGu |||||| ucuaucaaaaaauauCAUAUCa 2 8 18 39 [ce6:III:11462420-11462441:+] 0.5709 120 6 -7.70 -0.2429 MIMAT0000044 cel-miR-72 176575 Y47D3B.11 agucgauacgguuGUAGAACGga | |||||| ucaaucacauucuCUUCUUGCau 3 11 251 273 [ce6:III:11462653-11462675:+] 0.5860 122 0 -8.12 -0.1207 MIMAT0000045 cel-miR-73 176575 Y47D3B.11 ugacuUGACGGAUGUAGAACGgu || :|| | |||||| caaucACAUUCU-CUUCUUGCau 3 19 252 273 [ce6:III:11462654-11462675:+] 0.5860 128 0 -9.46 -0.1207 MIMAT0000046 cel-miR-74 176575 Y47D3B.11 acaucUGACGGUAAAGAACGgu || :| ||||||| caaucACAUUCUCUUCUUGCau 3 18 252 273 [ce6:III:11462654-11462675:+] 0.5860 129 0 -9.80 -0.1219 MIMAT0000061 cel-miR-90 176575 Y47D3B.11 uccccguaagUUUGUUGUAUAGu |||:| |||||| cucuaucaaaAAAUAUCAUAUCa 2 14 17 39 [ce6:III:11462419-11462441:+] 0.5709 129 6 -11.75 -0.2407 MIMAT0000282 cel-miR-124 176575 Y47D3B.11 accguAAGUGGCGCACGGAAu ||: : |||||||| uucucUUUUUGUCGUGCCUUg 2 17 61 81 [ce6:III:11462463-11462483:+] 0.5709 148 7 -17.30 -0.4323 MIMAT0004216 cel-miR-255 176575 Y47D3B.11 gacauuuuuuaGAGAAGUCAAa :|:||:|||| uuuuucuguugUUUUUUAGUUu 2 12 289 310 [ce6:III:11462691-11462712:+] 0.5860 131 0 -13.04 -0.1089 MIMAT0000699 cel-miR-357 176575 Y47D3B.11 ugaggaCGU-UG-CUGACCGUAAAu ||| :| |:: ||||||| uuguagGCACGCAGGUAGGCAUUUu 2 18 136 160 [ce6:III:11462538-11462562:+] 0.4797 147 7 -14.26 -0.4747 MIMAT0004219 cel-miR-784 176575 Y47D3B.11 agaUGCAUGCGU-CUAACACGGu | ||| ||| ||||||| cgcAGGUAGGCAUUUUUGUGCCu 2 20 145 167 [ce6:III:11462547-11462569:+] 0.4797 154 7 -17.96 -0.4282

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 plr-1; Y47D3B.11 cel-lin-4 131 152 AGUGUGAAC-UCCAGA-GUCCCU |:| |||| ||| |||| GCGC-CUUGUAGGCACGCAGGU- plr-1; Y47D3B.11 cel-miR-124 152 169 ACCGUAAGUGGCGCACGGAAU ||||||: :|||||| AGGCAUUUU---UGUGCCUA- plr-1; Y47D3B.11 cel-miR-232 141 161 AGUG-GCGUCAAUUCUACGUAAAU :| ||||| |||||| -GGCACGCAGGUAG---GCAUUUU plr-1; Y47D3B.11 cel-miR-241 67 87 AGUAAAGAGCGUGGAUGGAGU- ||| |||::||| |||: --UUUUGUCGUGCCUUGCUCGU plr-1; Y47D3B.11 cel-miR-243 69 92 CUAUAGGGCGGCGCUAGCA-UGGC |:|| :||| | |||| |:| -UUGUCGUGCCUUGCUCGUCAUCU plr-1; Y47D3B.11 cel-miR-248 152 174 ACUCGCAAUAGGCACG--UGCACAUA :|| | |||| ||||| -AGGCAUU-UUUGUGCCUACGUGG-- plr-1; Y47D3B.11 cel-miR-253* 201 221 CCAGUCACAAUCACUCCACAC |:|||||| |||||| -CUUAGUGUUUUUCAGGUGUC plr-1; Y47D3B.11 cel-miR-265 33 57 -UAUGGUG-GGA----AGGAGGGAGU |||:||| ||| |:||||| CAUAUCACACCUUUUCUUCUCCCA-- plr-1; Y47D3B.11 cel-miR-268 240 273 -UGGUUUGA-CG--------AAGAUUAAGAACGG ||| ||| |: |||| ||||||| UACCCAACGGGUCAAUCACAUUCUC-UUCUUGCA plr-1; Y47D3B.11 cel-miR-269 66 85 UCAAAACGGUCUCAGAACGG- |||||:|: | |||||: -UUUUUGUCGU-GCCUUGCUC plr-1; Y47D3B.11 cel-miR-272 150 172 -GUUUGUGGG--UACGGAUGU- :|::||::: :|||||||: GUAGGCAUUUUUGUGCCUACGU plr-1; Y47D3B.11 cel-miR-356 67 87 ACUAAACAAGCGC--AACGAGUU |||| |||:| ||||||: --UUUUG-UCGUGCCUUGCUCGU plr-1; Y47D3B.11 cel-miR-357 116 136 UGAGGACGUUGCUGAC-CGUAAAU |||| |:||||| || UCUCCACGUAUGACUGCGCC---- plr-1; Y47D3B.11 cel-miR-37 198 220 UGACGU-UCACAAGUGGGCCACU ||| ||||||: :| |||| -AUGCUUAGUGUUUUUCAGGUGU plr-1; Y47D3B.11 cel-miR-38 50 78 UGA-GGUCAAAAAGAGGGC-----CACU || ||||||||||||:: ||| UCUCCCAGUUUUUCUCUUUUUGUCGUGC plr-1; Y47D3B.11 cel-miR-58 68 94 UAACGGCAUG--ACUUGC--UAGAGU |||:|||:| || || ||||| UUUGUCGUGCCUUGCUCGUCAUCUCU plr-1; Y47D3B.11 cel-miR-784 128 168 AGAUGCA---------UGCGUCUA---------ACACGGU ||:|| ||||||:| |||||| ACUGCGCCUUGUAGGCACGCAGGUAGGCAUUUUUGUGCCU plr-1; Y47D3B.11 cel-miR-789 140 156 UGUUAACCACUGGGUCCGUCCCU || || ||||:||| -----AGGC-ACGCAGGUAGGC- plr-1; Y47D3B.11 cel-miR-790 198 224 -GCGC--CACAAGCGC-UCACGGUUC :|| |||||: :|||:||| AUGCUUAGUGUUUUUCAGGUGUCAAA plr-1; Y47D3B.11 cel-miR-796 239 265 AAUGA-UUGG--AGUUGAUGUAAGGU ||| ||| ||||: ||||||: GUACCCAACGGGUCAAUCACAUUCUC plr-1; Y47D3B.11 cel-lin-4 131 152 aGUGUGAAC-UCC-AGAGUCCcu |:| |||| ||| | |||| gCGC-CTTGTAGGCACGCAGGta plr-1; Y47D3B.11 cel-miR-124 56 81 accguAAGUG----GC-GCACGGAAu ||| | :| |||||||| agtttTTCTCTTTTTGTCGTGCCTTg plr-1; Y47D3B.11 cel-miR-124 152 169 aCCGUAAGUGGCGCACGGAau |||||| : :|||||| aGGCATT---TTTGTGCCTac plr-1; Y47D3B.11 cel-miR-232 142 160 aGUGGCGUCAAUUCUACGUAAAu || ||||| | || |||||| gCA-CGCAGGT-AG--GCATTTt plr-1; Y47D3B.11 cel-miR-241 86 108 AGUAAAGAG--CGUGGAUGGAGu |||| |||| | || |:||| TCATCTCTCCAACCCCGATCTCt plr-1; Y47D3B.11 cel-miR-243 58 79 cuAUAGGGCGGCGCUAGCAUGGc | ||:| :: :| ||||:|| ttTTTCTCTTTTTG-TCGTGCCt plr-1; Y47D3B.11 cel-miR-248 151 175 ACUCGCAAUAGGCACG--UGCACAUA | :|| || |::|||| ||||| || TAGGCATT-TTTGTGCCTACGTGGAT plr-1; Y47D3B.11 cel-miR-253* 200 220 CCAGUCACAAUCACUCCACAc | |:|||||| | |||||| GCTTAGTGTTTTTCAGGTGTc plr-1; Y47D3B.11 cel-miR-265 34 58 UAUGGUG-GGA----AGGAGGGagu |||:||| ||| |:||||| ATATCACACCTTTTCTTCTCCCagt plr-1; Y47D3B.11 cel-miR-268 250 272 ugGUUUGACGAAGAUUAAGAACGg ||| | |||| ||||||| gtCAATCACATTCT-CTTCTTGCa plr-1; Y47D3B.11 cel-miR-269 65 83 ucAAAACGGUCUCAGAACGg |||||:| | | ||||| ctTTTTGTC-GTGCCTTGCt plr-1; Y47D3B.11 cel-miR-272 151 170 gUUUGU--GGGUACGGAUGu |::|| ::::||||||| tAGGCATTTTTGTGCCTACg plr-1; Y47D3B.11 cel-miR-356 65 86 acuAAACAAGCGC--AACGAGuu |||| |||:| |||||| cttTTTG-TCGTGCCTTGCTCgt plr-1; Y47D3B.11 cel-miR-357 131 160 uGAGGA-----CGU-UG-CUGACCGUAAAu | ||| ||| :| |:: ||||||| gCGCCTTGTAGGCACGCAGGTAGGCATTTt plr-1; Y47D3B.11 cel-miR-37 197 219 UGACG-UUCACAAGUGGGCCACu | ||| ||||||: :| |||| AATGCTTAGTGTTTTTCAGGTGt plr-1; Y47D3B.11 cel-miR-38 39 60 UGAGGUCAAAAAGAGGGCCAcu || || || ||||||| || ACACCTTTTCTTCTCCCAGTtt plr-1; Y47D3B.11 cel-miR-58 78 108 uAACG-GCA-U---GA-CUU---GCUAGAGu |||| ||| | || || ||||||| cTTGCTCGTCATCTCTCCAACCCCGATCTCt plr-1; Y47D3B.11 cel-miR-784 137 167 AGAUGCAUGCGUCU---------AACACGGu | || | ||||||: ||||||| TGTAGGCACGCAGGTAGGCATTTTTGTGCCt plr-1; Y47D3B.11 cel-miR-789 132 156 uguuAAC--CACUGGGUCCGUCCcu ||| | || ||||:||| cgccTTGTAGGCACGCAGGTAGGca plr-1; Y47D3B.11 cel-miR-790 201 223 gcgcCAC-AAGCGCUCACGGUUc ||| ||: | :|||:||| cttaGTGTTTTTCAGGTGTCAAa plr-1; Y47D3B.11 cel-miR-796 240 264 aauGAUUG--GAGUUGAUGUAAGgu | ||| ||||: |||||| tacCCAACGGGTCAATCACATTCtc plr-1; Y47D3B.11 cel-miR-124 74 81 ACCGUA-------------------AGU--GGC-GCACGGAAU || ::| ||||||||: ACACCUUUUCUUCUCCCAGUUUUUCUCUUUUUGUCGUGCCUUGC plr-1; Y47D3B.11 cel-miR-268 265 272 -----------UGGUUUGA-CG--------AAGAUUAAGAACGG ||| ||| |: |||| ||||||| UCCCCAUGUGUACCCAACGGGUCAAUCACAUUCUC-UUCUUGCA plr-1; Y47D3B.11 cel-miR-272 163 170 -----------------------GUUUGU--GGGUACGGAUGU :|::|| :: |||||||: ACUGCGCCUUGUAGGCACGCAGGUAGGCAUUUUUGUGCCUACGU plr-1; Y47D3B.11 cel-miR-357 153 160 -------------UGAGGA-----CGU-UG-CUGACCGUAAAU :| ||| ||| :| |: ||||||| UCCACGUAUGACUGCGCCUUGUAGGCACGCAGGUAGGCAUUUU plr-1; Y47D3B.11 cel-miR-58 101 108 U--AACGGCAUGACUU-------------------GCUAGAGU |||:|||:| ||||||| UUUUUGUCGUGCCUUGCUCGUCAUCUCUCCAACCCCGAUCUCU plr-1; Y47D3B.11 cel-miR-784 160 167 A---GAUGCA---------UGCGUCU---------AACACGGU ||:|| ||||||: ||||||| AUGACUGCGCCUUGUAGGCACGCAGGUAGGCAUUUUUGUGCCU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score plr-1 RAID00549570 cel-miR-124-3p miRNA MIMAT0000282 plr-1 mRNA 176575 Prediction 0.1828 plr-1 RAID00827345 cel-miR-50-5p miRNA MIMAT0000021 plr-1 mRNA 176575 Prediction 0.1828 plr-1 RAID01014498 cel-miR-72-5p miRNA MIMAT0000044 plr-1 mRNA 176575 Prediction 0.1828 plr-1 RAID01215140 cel-miR-90-3p miRNA MIMAT0000061 plr-1 mRNA 176575 Prediction 0.1828 plr-1 RAID01408911 cel-miR-255-3p miRNA MIMAT0004216 plr-1 mRNA 176575 Prediction 0.1828 plr-1 RAID01523783 cel-miR-62 miRNA MIMAT0000034 plr-1 mRNA 176575 Prediction 0.1828 plr-1 RAID01968744 cel-miR-784-5p miRNA MIMAT0004219 plr-1 mRNA 176575 Prediction 0.1828 plr-1 RAID02490196 cel-miR-357-3p miRNA MIMAT0000699 plr-1 mRNA 176575 Prediction 0.1828 plr-1 RAID02955685 cel-miR-58a-3p miRNA MIMAT0000030 plr-1 mRNA 176575 Prediction 0.1828 plr-1 RAID02965922 cel-miR-74-3p miRNA MIMAT0000046 plr-1 mRNA 176575 Prediction 0.1828 plr-1 RAID03837264 cel-miR-73-3p miRNA MIMAT0000045 plr-1 mRNA 176575 Prediction 0.1828