PPI - IID Symbol 1 Symbol 2 PMID DBs Evidence Type Adipose Tissue Adrenal Gland Amygdala Bone Bone Marrow Brain Dorsal Root Ganglia Eye Heart Hindgut Hypothalamus Kidney Liver Lung Lymph Nodes Mammary Gland Midgut Neurons Ovary Pancreas Pituitary Gland Placenta Prostate Salivary Gland Skeletal Muscle Small Intestine Spleen Stomach Testes Uterus PMA1 UBP13 22902402 biogrid exp RPS19B UBP13 22902402 biogrid exp RPL30 UBP13 22902402 biogrid exp UBP13 PDS1 22072716 biogrid exp GPM1 UBP13 22902402 biogrid exp UBP13 GIS2 21232131 biogrid exp RPL24A UBP13 22902402 biogrid exp ENO2 UBP13 22902402 biogrid exp UBP13 RPL17B 22902402 biogrid exp RPS16B UBP13 22902402 biogrid exp ILV5 UBP13 22902402 biogrid exp RPS9B UBP13 22902402 biogrid exp UBP13 HSP42 19536198 intact exp UBP13 UBP9 16554755 intact exp AHP1 UBP13 22902402 biogrid exp RPL4A UBP13 22902402 biogrid exp RPL8A UBP13 22902402 biogrid exp RPS24B UBP13 22902402 biogrid exp UBP13 SSB2 22902402 biogrid exp TIF1, TIF2 UBP13 22902402 biogrid exp SIS1 UBP13 19536198 intact exp HMT1 UBP13 22997150 biogrid exp UBP13 CCT4 19536198 intact exp SSA2 UBP13 22902402,19536198 biogrid,intact exp RPS5 UBP13 22902402 biogrid exp UBP13 SAH1 22902402 biogrid exp SSE1 UBP13 19536198 intact exp UBP13 COF1 22902402 biogrid exp RPL6B UBP13 22902402 biogrid exp UBP13 CHZ1 16554755 biogrid,i2d,mint,intact exp PGI1 UBP13 22902402 biogrid exp RPS6B UBP13 22902402 biogrid,i2d exp RPP2B UBP13 22902402 biogrid exp NAB2 UBP13 19840948 biogrid exp SEC65 UBP13 16554755 biogrid,i2d,mint,intact exp UBP13 CTS2 22902402 biogrid exp ASC1 UBP13 22902402 biogrid exp UBP13 STM1 22902402 biogrid exp RPL26A UBP13 22902402 biogrid exp EFT1, EFT2 UBP13 22902402 biogrid exp RPL25 UBP13 22902402 biogrid exp UBP13 GPP1 22902402 biogrid exp SSB1 UBP13 22902402,19536198 biogrid,intact exp RPL12B UBP13 22902402 biogrid exp UBP13 RPL13A 22902402 biogrid exp UBP13 UBP13 22902402 biogrid exp UBP13 RPS20 22902402 biogrid exp GSP1 UBP13 22902402 biogrid exp YEF3 UBP13 22902402 biogrid exp KKQ8 UBP13 22902402 biogrid exp RPS6A UBP13 i2d exp UBP13 XDJ1 19536198 intact exp RPL33A UBP13 22902402 biogrid exp UBP13 HSE1 19841731 biogrid,mint,intact exp SSA1 UBP13 22902402,19536198 biogrid,intact exp UBP13 APJ1 19536198 intact exp UBP13 KSP1 16319894 biogrid,i2d exp RPS3 UBP13 22902402 biogrid exp UBP13 RPS7B 22902402 biogrid exp HSC82 UBP13 22902402 biogrid exp IPP1 UBP13 22902402 biogrid exp PRP21 UBP13 9207794, 23023127 biogrid,i2d,dip exp, pred UBP13 Uncharacterized WD repeat-containing protein YOL087C 22902402,16429126,22723847,16554755, 23023127 biogrid,i2d,mint,intact exp, pred UBP13 RPN11 20170199, 23023127 biogrid exp, pred

PPI - iRefIndex UniProt A UniProt B Method PMID Interaction Type Edge type Num Participants P06168 P38187 affinity chromatography technology 22902402 physical association X 2 P38187 Q99247 affinity chromatography technology 22723847 physical association X 2 P38187 Q99247 pull down 22723847 direct interaction X 2 P38187 P38013 affinity chromatography technology 22902402 physical association X 2 P38187 Q03048 affinity chromatography technology 22902402 physical association X 2 P38187 Q06350 affinity chromatography technology 22902402 physical association X 2 P38187 Q99247 affinity chromatography technology 22902402 physical association X 2 P38187 P32324 affinity chromatography technology 22902402 physical association X 2 P38187 P00925 affinity chromatography technology 22902402 physical association X 2 P38187 P12709 affinity chromatography technology 22902402 physical association X 2 P38187 P0CX53 affinity chromatography technology 22902402 physical association X 2 P38187 P46990 affinity chromatography technology 22902402 physical association X 2 P38187 P04456 affinity chromatography technology 22902402 physical association X 2 P38187 P14120 affinity chromatography technology 22902402 physical association X 2 P38187 P05744 affinity chromatography technology 22902402 physical association X 2 P38187 P10664 affinity chromatography technology 22902402 physical association X 2 P38187 P17076 affinity chromatography technology 22902402 physical association X 2 P38187 P02400 affinity chromatography technology 22902402 physical association X 2 P38187 P0CX51 affinity chromatography technology 22902402 physical association X 2 P38187 P05750 affinity chromatography technology 22902402 physical association X 2 P38187 P26783 affinity chromatography technology 22902402 physical association X 2 P38187 P39954 affinity chromatography technology 22902402 physical association X 2 P38187 P10592 affinity chromatography technology 22902402 physical association X 2 P38187 P39015 affinity chromatography technology 22902402 physical association X 2 P38187 P29478 affinity chromatography technology 16554755 physical association X 2 P38187 Q99247 affinity chromatography technology 16554755 physical association X 2 P38187 P38691 enzymatic study 16319894 direct interaction X 2 P38187 Q99247 affinity chromatography technology 17200106 physical association X 2 P38187 P43588 affinity chromatography technology 20170199 physical association X 2 P07281 P38187 affinity chromatography technology 22902402 physical association X 2 P38701 P38187 affinity chromatography technology 22902402 physical association X 2 P15108 P38187 affinity chromatography technology 22902402 physical association X 2 P0CG63 P38187 affinity chromatography technology 23749301 physical association X 2 P41277 P38187 affinity chromatography technology 22902402 physical association X 2 P38187 P32524 two hybrid 9207794 direct interaction X 2 P38187 P40316 enzymatic study 22072716 direct interaction X 2 P38187 W4YHN9 enzymatic study 22072716 direct interaction X 2 P38187 P38011 affinity chromatography technology 22902402 physical association X 2 P38187 P00950 affinity chromatography technology 22902402 physical association X 2 P38187 P00817 affinity chromatography technology 22902402 physical association X 2 P38187 P05030 affinity chromatography technology 22902402 physical association X 2 P38187 Q12690 affinity chromatography technology 22902402 physical association X 2 P38187 P05743 affinity chromatography technology 22902402 physical association X 2 P38187 P05739 affinity chromatography technology 22902402 physical association X 2 P38187 P0CX31 affinity chromatography technology 22902402 physical association X 2 P38187 P0CX37 affinity chromatography technology 22902402 physical association X 2 P38187 P48164 affinity chromatography technology 22902402 physical association X 2 P38187 P05755 affinity chromatography technology 22902402 physical association X 2 P38187 P11484 affinity chromatography technology 22902402 physical association X 2 P38187 P40150 affinity chromatography technology 22902402 physical association X 2 P38187 P10081 affinity chromatography technology 22902402 physical association X 2 P38187 P38187 affinity chromatography technology 22902402 physical association X 2 P38187 P16521 affinity chromatography technology 22902402 physical association X 2 P38187 P36004 affinity chromatography technology 22902402 physical association X 2 P38187 P40019 affinity chromatography technology 16554755 physical association X 2 P38187 P38753 two hybrid 19841731 direct interaction X 2 P04449 P38187 affinity chromatography technology 22902402 physical association X 2 P10591 P38187 affinity chromatography technology 22902402 physical association X 2 P10591 P38187 affinity chromatography technology 19536198 physical association X 2 P10591 P38187 affinity chromatography technology 19536198 physical association X 2 P38074 P38187 affinity chromatography technology 22997150 physical association X 2 P32835 P38187 affinity chromatography technology 22902402 physical association X 2 P38187 tandem affinity purification 16429126 association C 10 P38187 inferred by author 16554755 association C 3 P38187 Q99247 tandem affinity purification 16554755 physical association X 2 P38187 Q99247 tandem affinity purification 16554755 physical association X 2 P38187 Q99247 tandem affinity purification 16554755 physical association X 2 P38187 Q99247 tandem affinity purification 16554755 physical association X 2 P38187 P29478 tandem affinity purification 16554755 physical association X 2 P38187 P29478 tandem affinity purification 16554755 physical association X 2 P38187 Q99247 tandem affinity purification 16554755 physical association X 2 P38187 Q99247 tandem affinity purification 16554755 physical association X 2 P38187 Q99247 tandem affinity purification 16554755 physical association X 2 P38187 P10592 tandem affinity purification 19536198 association X 2 P38187 P39102 tandem affinity purification 19536198 association X 2 P38187 P25294 tandem affinity purification 19536198 association X 2 P38187 P53940 tandem affinity purification 19536198 association X 2 P32589 P38187 tandem affinity purification 19536198 association X 2 P38187 P40019 tandem affinity purification 16554755 physical association X 2 P38187 P40019 tandem affinity purification 16554755 physical association X 2 P38187 P11484 tandem affinity purification 19536198 association X 2 P38187 P39078 tandem affinity purification 19536198 association X 2 P38187 Q12329 tandem affinity purification 19536198 association X 2 P38187 P38753 two hybrid pooling approach 19841731 physical association X 2 P10591 P38187 tandem affinity purification 19536198 association X 2 P10591 P38187 tandem affinity purification 19536198 association X 2 P38187 P34226 interaction detection method 14764870 - X 2 P38187 P32524 two hybrid 9207794 - X 2

PPI - HINT Gene A Gene B PMID Method Quality PRP21 UBP13 9207794 0018 HT UBP13 KSP1 16319894 0415 LC UBP13 HSE1 19841731,19841731 0398,0018 HT UBP13 PDS1 22072716 0415 LC IPP1 UBP13 22902402 0004 LC ENO2 UBP13 22902402 0004 LC GPM1 UBP13 22902402 0004 LC RPP2B UBP13 22902402 0004 LC RPL24A UBP13 22902402 0004 LC RPL25 UBP13 22902402 0004 LC PMA1 UBP13 22902402 0004 LC RPL6B UBP13 22902402 0004 LC RPL26A UBP13 22902402 0004 LC RPL33A UBP13 22902402 0004 LC RPS3 UBP13 22902402 0004 LC RPS9B UBP13 22902402 0004 LC ILV5 UBP13 22902402 0004 LC RPS19B UBP13 22902402 0004 LC RPS24B UBP13 22902402 0004 LC RPS6B UBP13 22902402 0004 LC RPS16B UBP13 22902402 0004 LC RPL12B UBP13 22902402 0004 LC TIF1|TIF2 UBP13 22902402 0004 LC SSA1 UBP13 19536198,22902402,19536198 0004,0004,0676 HT,LC SSA2 UBP13 19536198,22902402 0676,0004 HT,LC RPL4A UBP13 22902402 0004 LC SSB1 UBP13 19536198,22902402 0676,0004 HT,LC PGI1 UBP13 22902402 0004 LC RPL30 UBP13 22902402 0004 LC HSC82 UBP13 22902402 0004 LC YEF3 UBP13 22902402 0004 LC RPL8A UBP13 22902402 0004 LC SIS1 UBP13 19536198 0676 HT RPS5 UBP13 22902402 0004 LC SEC65 UBP13 16554755,16554755 0676,0004 HT EFT1|EFT2 UBP13 22902402 0004 LC NAB2 UBP13 19840948 0004 LC SSE1 UBP13 19536198 0676 HT GSP1 UBP13 22902402 0004 LC KKQ8 UBP13 22902402 0004 LC ASC1 UBP13 22902402 0004 LC AHP1 UBP13 22902402 0004 LC HMT1 UBP13 22997150 0004 LC UBP13 UBP13 22902402 0004 LC UBP13 RPS20 22902402 0004 LC UBP13 STM1 22902402 0004 LC UBP13 CCT4 19536198 0676 HT UBP13 XDJ1 19536198 0676 HT UBP13 SAH1 22902402 0004 LC UBP13 UBP9 16554755 0363 HT UBP13 CHZ1 16554755,16554755 0676,0004 HT UBP13 SSB2 22902402 0004 LC UBP13 GPP1 22902402 0004 LC UBP13 RPN11 20170199 0004 LC UBP13 RPL17B 22902402 0004 LC UBP13 RPS7B 22902402 0004 LC UBP13 INO80 26656161 0004 LC UBP13 APJ1 19536198 0676 HT UBP13 COF1 22902402 0004 LC UBP13 CTS2 22902402 0004 LC UBP13 HSP42 19536198 0676 HT UBP13 RPL13A 22902402 0004 LC UBP13 Q99247 16554755,16554755,16429126,22723847,22902402,17200106,22723847,16554755 0363,0004,0676,0096,0004,0004,0004,0676 HT,LC

PPI - Mentha Protein A Protein B Gene A Gene B Score PMID P53115 P38187 INO80 UBP13 0.21 26656161 Q12329 P38187 HSP42 UBP13 0.126 19536198 P38187 P25294 UBP13 SIS1 0.126 19536198 P38187 P10591 UBP13 SSA1 0.416 22902402,19536198 P38187 P10592 UBP13 SSA2 0.236 22902402,19536198 P40019 P38187 CHZ1 UBP13 0.236 16554755 Q99247 P38187 Q99247 UBP13 0.757 22902402,16429126,22723847,16554755 P38187 P29478 UBP13 SEC65 0.236 16554755 P38187 P38074 UBP13 HMT1 0.126 22997150 P38187 P00817 UBP13 IPP1 0.126 22902402 P38187 P00925 UBP13 ENO2 0.126 22902402 P38187 P00950 UBP13 GPM1 0.126 22902402 P38187 P02400 UBP13 RPP2B 0.126 22902402 P38187 P04449 UBP13 RPL24A 0.126 22902402 P38187 P04456 UBP13 RPL25 0.126 22902402 P38187 P05030 UBP13 PMA1 0.126 22902402 P38187 P05739 UBP13 RPL6B 0.126 22902402 P38187 P05743 UBP13 RPL26A 0.126 22902402 P38187 P05744 UBP13 RPL33A 0.126 22902402 P38187 P05750 UBP13 RPS3 0.126 22902402 P38187 P05755 UBP13 RPS9B 0.126 22902402 P38187 P06168 UBP13 ILV5 0.126 22902402 P38187 P07281 UBP13 RPS19B 0.126 22902402 P38187 P0CX31 UBP13 RPS24A 0.126 22902402 P38187 P0CX32 UBP13 RPS24B 0.126 22902402 P38187 P0CX37 UBP13 RPS6A 0.126 22902402 P38187 P0CX38 UBP13 RPS6B 0.126 22902402 P38187 P0CX51 UBP13 RPS16A 0.126 22902402 P38187 P0CX52 UBP13 RPS16B 0.126 22902402 P38187 P0CX53 UBP13 RPL12A 0.126 22902402 P38187 P0CX54 UBP13 RPL12B 0.126 22902402 P38187 P10081 UBP13 TIF2 0.126 22902402 P38187 P10664 UBP13 RPL4A 0.126 22902402 P38187 P11484 UBP13 SSB1 0.236 22902402,19536198 P38187 P12709 UBP13 PGI1 0.126 22902402 P38187 P14120 UBP13 RPL30 0.126 22902402 P38187 P15108 UBP13 HSC82 0.126 22902402 P38187 P16521 UBP13 YEF3 0.126 22902402 P38187 P17076 UBP13 RPL8A 0.126 22902402 P38187 P26783 UBP13 RPS5 0.126 22902402 P38187 P32324 UBP13 EFT2 0.126 22902402 P38187 P32524 UBP13 PRP21 0.033 9207794 P38187 P32835 UBP13 GSP1 0.126 22902402 P38187 P36004 UBP13 KKQ8 0.126 22902402 P38187 P38011 UBP13 ASC1 0.126 22902402 P38187 P38013 UBP13 AHP1 0.126 22902402 P38187 P38187 UBP13 UBP13 0.155 22902402 P38701 P38187 RPS20 UBP13 0.126 22902402 P38753 P38187 HSE1 UBP13 0.286 19841731 P39015 P38187 STM1 UBP13 0.126 22902402 P39078 P38187 CCT4 UBP13 0.126 19536198 P39954 P38187 SAH1 UBP13 0.126 22902402 P39967 P38187 UBP9 UBP13 0.126 16554755 P40150 P38187 SSB2 UBP13 0.126 22902402 P40316 P38187 PDS1 UBP13 0.309 22072716 P41277 P38187 RHR2 UBP13 0.126 22902402 P46990 P38187 RPL17B UBP13 0.126 22902402 P48164 P38187 RPS7B UBP13 0.126 22902402 P53940 P38187 APJ1 UBP13 0.126 19536198 Q03048 P38187 COF1 UBP13 0.126 22902402 Q06350 P38187 CTS2 UBP13 0.126 22902402 Q12690 P38187 RPL13A UBP13 0.126 22902402 P38691 P38187 KSP1 UBP13 0.183 16319894 P38187 P32505 UBP13 NAB2 0.126 19840948 P38187 P32589 UBP13 SSE1 0.126 19536198 P39102 P38187 XDJ1 UBP13 0.126 19536198 P43588 P38187 RPN11 UBP13 0.126 20170199 P53849 P38187 GIS2 UBP13 0.126 21232131