PPI - IID Symbol 1 Symbol 2 PMID DBs Evidence Type Adipose Tissue Adrenal Gland Amygdala Bone Bone Marrow Brain Dorsal Root Ganglia Eye Heart Hindgut Hypothalamus Kidney Liver Lung Lymph Nodes Mammary Gland Midgut Neurons Ovary Pancreas Pituitary Gland Placenta Prostate Salivary Gland Skeletal Muscle Small Intestine Spleen Stomach Testes Uterus SSA2 UBX3 22940862,19536198 biogrid,intact exp TIM44 UBX3 11283351 i2d,mint,intact,dip exp Uncharacterized membrane protein YOL073C UBX3 22681890,25078903 biogrid exp CHC1 UBX3 26362318 biogrid exp SSA1 UBX3 22940862,19536198 biogrid,intact exp SRS2 UBX3 15964827 biogrid exp NAB2 UBX3 19840948 biogrid exp TUL1 UBX3 25078903 biogrid exp Transmembrane protein YOR223W UBX3 25078903 biogrid exp SSE1 UBX3 19536198 intact exp SLA1 UBX3 19841731, 23023127 mint,intact exp, pred RSP5 UBX3 16606443, 23023127 biogrid,mint,intact exp, pred CDC48 UBX3 26362318,15258615, 23023127 biogrid,intact exp, pred YUH1 UBX3 23023127 pred UBP16 UBX3 23023127 pred UBP15 UBX3 23023127 pred UBX3 UBX3 23023127 pred YPI1 UBX3 23023127 pred CUE1 UBX3 23023127 pred GGA1 UBX3 23023127 pred UBX7 UBX3 23023127 pred CDC24 UBX3 23023127 pred VPS20 UBX3 23023127 pred EDE1 UBX3 23023127 pred CUE3 UBX3 23023127 pred UBX6 UBX3 23023127 pred UBC7 UBX3 23023127 pred UBC12 UBX3 23023127 pred UBC1 UBX3 23023127 pred NBP2 UBX3 23023127 pred UBA1 UBX3 23023127 pred UBI4 UBX3 23023127 pred MMS2 UBX3 23023127 pred UBX3 HUB1 23023127 pred CDC34 UBX3 23023127 pred CUE2 UBX3 23023127 pred DSK2 UBX3 23023127 pred ATG8 UBX3 23023127 pred RVS161 UBX3 23023127 pred SHP1 UBX3 23023127 pred OTU1 UBX3 23023127 pred DOA4 UBX3 23023127 pred UBX3 RUP1 23023127 pred UBP6 UBX3 23023127 pred UBC4 UBX3 23023127 pred ULP1 UBX3 23023127 pred UBC8 UBX3 23023127 pred YSC84 UBX3 23023127 pred RAD23 UBX3 23023127 pred CUZ1 UBX3 23023127 pred ATG12 UBX3 23023127 pred VPS9 UBX3 23023127 pred UBP14 UBX3 23023127 pred UBX5 UBX3 23023127 pred SHO1 UBX3 23023127 pred

PPI - iRefIndex UniProt A UniProt B Method PMID Interaction Type Edge type Num Participants Q01852 Q12229 - 11283351 - X 2 P36096 Q12229 affinity chromatography technology 25078903 physical association X 2 P12954 Q12229 two hybrid 15964827 direct interaction X 2 P10591 Q12229 affinity chromatography technology 22940862 physical association X 2 P39940 Q12229 unspecified method 16606443 direct interaction X 2 P10592 Q12229 affinity chromatography technology 22940862 physical association X 2 P0CG63 Q12229 affinity chromatography technology 12872131 physical association X 2 Q12229 P25694 two hybrid 15258615 direct interaction X 2 Q12229 Q12015 affinity chromatography technology 25078903 physical association X 2 Q12229 Q12015 affinity chromatography technology 25078903 physical association X 2 Q12229 P25694 two hybrid 15258615 direct interaction X 2 Q12229 P25694 affinity chromatography technology 15258615 physical association X 2 Q08232 Q12229 affinity chromatography technology 22681890 physical association X 2 Q08232 Q12229 affinity chromatography technology 25078903 physical association X 2 Q08232 Q12229 affinity chromatography technology 25078903 physical association X 2 Q01852 Q12229 two hybrid pooling approach 11283351 physical association X 2 P10591 Q12229 tandem affinity purification 19536198 association X 2 P39940 Q12229 protein array 16606443 direct interaction X 2 P10592 Q12229 tandem affinity purification 19536198 association X 2 P32589 Q12229 tandem affinity purification 19536198 association X 2 Q01852 Q12229 two hybrid fragment pooling approach 11283351 physical association X 2 Q12229 P25694 two hybrid 15258615 physical association X 2 Q12229 P25694 anti tag coimmunoprecipitation 15258615 physical association X 2 Q12229 P25694 two hybrid 15258615 physical association X 2 Q12229 P32790 inferred by author 19841731 direct interaction X 2 Q01852 Q12229 two hybrid 11283351 - X 2

PPI - Mentha Protein A Protein B Gene A Gene B Score PMID Q12229 P22137 UBX3 CHC1 0.309 26362318 Q12229 P25694 UBX3 CDC48 0.794 26527740,26362318,15258615 Q12229 P10591 UBX3 SSA1 0.126 19536198 Q12229 P10592 UBX3 SSA2 0.126 19536198 Q12229 P12954 UBX3 SRS2 0.183 15964827 Q12229 Q12015 UBX3 Q12015 0.61 26527740,25078903 Q12229 P36096 UBX3 TUL1 0.376 26527740,25078903 Q12229 Q08232 UBX3 Q08232 0.692 26527740,22681890,25078903 Q12229 P32505 UBX3 NAB2 0.126 19840948 Q12229 P32589 UBX3 SSE1 0.126 19536198 Q12229 P32790 UBX3 SLA1 0.183 19841731 Q12229 P39940 UBX3 RSP5 0.332 16606443 Q12229 Q01852 UBX3 TIM44 0.236 11283351