PTM - CPLM Gene Name UniProt ID Type Position Code CDC48; YDL126C P25694 Acetylation 119 K CDC48; YDL126C P25694 Acetylation 763 K CDC48; YDL126C P25694 Acetylation 755 K CDC48; YDL126C P25694 Ubiquitination 594 K CDC48; YDL126C P25694 Ubiquitination 673 K CDC48; YDL126C P25694 Ubiquitination 241 K CDC48; YDL126C P25694 Ubiquitination 305 K CDC48; YDL126C P25694 Ubiquitination 322 K CDC48; YDL126C P25694 Ubiquitination 539 K CDC48; YDL126C P25694 Ubiquitination 346 K CDC48; YDL126C P25694 Ubiquitination 522 K CDC48; YDL126C P25694 Ubiquitination 119 K CDC48; YDL126C P25694 Ubiquitination 158 K CDC48; YDL126C P25694 Ubiquitination 221 K CDC48; YDL126C P25694 Ubiquitination 261 K CDC48; YDL126C P25694 Ubiquitination 785 K CDC48; YDL126C P25694 Ubiquitination 246 K CDC48; YDL126C P25694 Ubiquitination 534 K CDC48; YDL126C P25694 Ubiquitination 763 K CDC48; YDL126C P25694 Ubiquitination 624 K CDC48; YDL126C P25694 Ubiquitination 740 K CDC48; YDL126C P25694 Ubiquitination 298 K CDC48; YDL126C P25694 Ubiquitination 21 K

PTM - dbPAF Gene Name UniProt ID Position Type Species CDC48; YDL126C P25694 12 S Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast) CDC48; YDL126C P25694 22 T Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast) CDC48; YDL126C P25694 292 S Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast) CDC48; YDL126C P25694 318 S Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast) CDC48; YDL126C P25694 423 S Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast) CDC48; YDL126C P25694 472 S Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast) CDC48; YDL126C P25694 519 S Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast) CDC48; YDL126C P25694 521 S Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast) CDC48; YDL126C P25694 532 T Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast) CDC48; YDL126C P25694 591 S Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast) CDC48; YDL126C P25694 599 S Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast) CDC48; YDL126C P25694 665 S Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast) CDC48; YDL126C P25694 683 T Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast) CDC48; YDL126C P25694 735 T Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast) CDC48; YDL126C P25694 768 S Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast) CDC48; YDL126C P25694 770 S Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast) CDC48; YDL126C P25694 781 S Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast) CDC48; YDL126C P25694 787 S Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast)

PTM - dbPTM UniProt ID Position Code Type Resources References P25694 292 S Phosphorylation Swiss-Prot 1010711 18407956 P25694 318 S Phosphorylation Swiss-Prot 1010711 18407956 P25694 423 S Phosphorylation Swiss-Prot 1010711 18407956 P25694 472 S Phosphorylation Swiss-Prot 1010711 18407956 P25694 519 S Phosphorylation Swiss-Prot 1010711 15665377;17330950;17563356;18407956 P25694 594 K Ubiquitylation Swiss-Prot 1010711 12872131 P25694 599 S Phosphorylation Swiss-Prot 1010711 18407956 P25694 673 K Ubiquitylation Swiss-Prot 1010711 12872131 P25694 683 T Phosphorylation Swiss-Prot 1010711 12872131 P25694 735 T Phosphorylation Swiss-Prot 1010711 17563356;18407956 P25694 770 S Phosphorylation Swiss-Prot 1010711 17287358;17330950;17563356;18407956 P25694 594 K Ubiquitylation SysPTM 1.1 12872131 P25694 673 K Ubiquitylation SysPTM 1.1 12872131 P25694 292 S Phosphorylation SysPTM 1.1 18407956 P25694 318 S Phosphorylation SysPTM 1.1 18407956 P25694 423 S Phosphorylation SysPTM 1.1 18407956 P25694 472 S Phosphorylation SysPTM 1.1 18407956 P25694 519 S Phosphorylation SysPTM 1.1 17330950;18407956;15665377 P25694 599 S Phosphorylation SysPTM 1.1 18407956 P25694 770 S Phosphorylation SysPTM 1.1 18407956;17330950;17287358 P25694 683 T Phosphorylation SysPTM 1.1 12872131 P25694 735 T Phosphorylation SysPTM 1.1 18407956 P25694 594 K Ubiquitylation UbiProtDB 1.0 12872131;15699485 P25694 673 K Ubiquitylation UbiProtDB 1.0 12872131;15699485

PTM - UniProt UniProt ID Position Type PMIDs P25694 472 Phosphoserine 18407956 P25694 519 Phosphoserine 17330950;19779198 P25694 735 Phosphothreonine 18407956;19779198 P25694 770 Phosphoserine 17287358;17330950

PTM - PHOSIDA Symbol Accession Code Position Surrounding Sequence Type CDC48 YDL126C S 519 YTKFGLpSPSKGVL phosphorylation CDC48 YDL126C S 521 KFGLSPpSKGVLFY phosphorylation CDC48 YDL126C S 770 TAKRSVpSDAELRR phosphorylation

PTM - BioGRID Entrez Gene BioGRID ID Position Code Type PMIDs 851431 31937 292 S Phosphorylation 18407956 851431 31937 318 S Phosphorylation 18407956 851431 31937 423 S Phosphorylation 18407956 851431 31937 472 S Phosphorylation 18407956 851431 31937 519 S Phosphorylation 19795423 851431 31937 519 S Phosphorylation 19823750 851431 31937 519 S Phosphorylation 17563356 851431 31937 519 S Phosphorylation 17330950 851431 31937 519 S Phosphorylation 15665377 851431 31937 519 S Phosphorylation 20702584 851431 31937 519 S Phosphorylation 18407956 851431 31937 519 S Phosphorylation 19779198 851431 31937 519 S Phosphorylation 19684113 851431 31937 519 S Phosphorylation 21126336 851431 31937 521 S Phosphorylation 19795423 851431 31937 521 S Phosphorylation 19823750 851431 31937 532 T Phosphorylation 19779198 851431 31937 665 S Phosphorylation 19779198 851431 31937 735 T Phosphorylation 21126336 851431 31937 735 T Phosphorylation 20489023 851431 31937 735 T Phosphorylation 17563356 851431 31937 735 T Phosphorylation 18407956 851431 31937 735 T Phosphorylation 19779198 851431 31937 768 S Phosphorylation 21126336 851431 31937 770 S Phosphorylation 17563356 851431 31937 770 S Phosphorylation 17330950 851431 31937 770 S Phosphorylation 20702584 851431 31937 770 S Phosphorylation 20489023 851431 31937 770 S Phosphorylation 18407956 851431 31937 770 S Phosphorylation 17287358 851431 31937 770 S Phosphorylation 19779198 851431 31937 770 S Phosphorylation 21177495 851431 31937 787 S Phosphorylation 19795423 851431 31937 787 S Phosphorylation 19823750 851431 31937 - K Sumoylation 15292183 851431 31937 - K Sumoylation 15590687 851431 31937 - K Ubiquitination 12872131 851431 31937 - K Sumoylation 15326169 851431 31937 - K Ubiquitination 15699485 851431 31937 - K Sumoylation 15166219 851431 31937 - K Ubiquitination 21427232 851431 31937 - K Ubiquitination 14557538 851431 31937 - K Sumoylation 15542864 851431 31937 - K Sumoylation 22025676 851431 31937 - K Ubiquitination 22106047 851431 31937 - K Ubiquitination 23749301 851431 31937 - K Sumoylation 23935535 851431 31937 - K Ubiquitination 23583075 851431 31937 - K Ubiquitination 17644757 851431 31937 - K Ubiquitination 21983566