PPI - IID Symbol 1 Symbol 2 PMID DBs Evidence Type Adipose Tissue Adrenal Gland Amygdala Bone Bone Marrow Brain Dorsal Root Ganglia Eye Heart Hindgut Hypothalamus Kidney Liver Lung Lymph Nodes Mammary Gland Midgut Neurons Ovary Pancreas Pituitary Gland Placenta Prostate Salivary Gland Skeletal Muscle Small Intestine Spleen Stomach Testes Uterus UBX6 PSF3 14690591 intact exp CRM1 UBX6 26673895 biogrid exp UBX6 PUF3 23409723,26493364 biogrid exp CLB5 UBX6 20489023,10688190 biogrid,mint,intact,dip exp UBX6 STD1 11283351 i2d,mint,intact,dip exp PRE8 UBX6 i2d exp UBX6 GCN5 14660704 intact exp CDC48 UBX6 14755638,21211725,15258615, 23023127 biogrid,intact exp, pred UBX6 ATG17 18719252, 23023127 biogrid,intact exp, pred UBX6 MDM30 10688190, 23023127 biogrid,i2d,mint,intact,dip exp, pred DOA1 UBX6 14755638, 23023127 biogrid exp, pred SHE2 UBX6 10688190,11283351, 23023127 biogrid,i2d,mint,intact,dip exp, pred UBX7 UBX6 14755638, 23023127 biogrid exp, pred UBX6 UBI4 23023127 pred UBX6 VPS36 23023127 pred ATG8 UBX6 23023127 pred UBX6 UBC12 23023127 pred UBX6 HUB1 23023127 pred SLA1 UBX6 23023127 pred UBC1 UBX6 23023127 pred UBX6 UBX3 23023127 pred UBX6 UBP15 23023127 pred ATG12 UBX6 23023127 pred UBC5 UBX6 23023127 pred UBX6 UBP16 23023127 pred RAD23 UBX6 23023127 pred UBC6 UBX6 23023127 pred SHP1 UBX6 23023127 pred SNF7 UBX6 23023127 pred UBX6 GGA1 23023127 pred GGA2 UBX6 23023127 pred UBX6 SRN2 23023127 pred UBC8 UBX6 23023127 pred UBX6 UBX6 23023127 pred MYO3 UBX6 23023127 pred UBX6 CUE3 23023127 pred OTU1 UBX6 23023127 pred UBP5 UBX6 23023127 pred CUE1 UBX6 23023127 pred YUH1 UBX6 23023127 pred UBX6 UBX5 23023127 pred UBX6 UBC11 23023127 pred UBX6 VPS9 23023127 pred UBX6 SMT3 23023127 pred UBX6 UBC7 23023127 pred UBP11 UBX6 23023127 pred UBC4 UBX6 23023127 pred UBX6 DSK2 23023127 pred UBX6 MMS2 23023127 pred FUS1 UBX6 23023127 pred UBP6 UBX6 23023127 pred CUE2 UBX6 23023127 pred DOA4 UBX6 23023127 pred DDI1 UBX6 23023127 pred UBX6 UBX4 23023127 pred CDC34 UBX6 23023127 pred EDE1 UBX6 23023127 pred RAD6 UBX6 23023127 pred UBX6 VPS20 23023127 pred CDC25 UBX6 23023127 pred UBA1 UBX6 23023127 pred UBX6 CUE5 23023127 pred PEX4 UBX6 23023127 pred UBP14 UBX6 23023127 pred UBP7 UBX6 23023127 pred UBX6 RUP1 23023127 pred

PPI - iRefIndex UniProt A UniProt B Method PMID Interaction Type Edge type Num Participants P47049 P36068 - 10655498 - X 2 P47049 P36068 - 10688190 - X 2 P47049 P36068 - 11283351 - X 2 P47049 Q02794 - 11283351 - X 2 P47049 Q05930 - 10688190 - X 2 P47049 P25694 two hybrid 14755638 direct interaction X 2 P47049 P36037 two hybrid 14755638 direct interaction X 2 P47049 P25694 two hybrid 15258615 direct interaction X 2 P47049 P25694 two hybrid 15258615 direct interaction X 2 P47049 P25694 affinity chromatography technology 15258615 physical association X 2 P47049 P36068 two hybrid 11283351 direct interaction X 2 P47049 P30283 affinity chromatography technology 20489023 physical association X 2 P47049 P25694 affinity chromatography technology 21211725 physical association X 2 P47049 P36068 two hybrid 10688190 direct interaction X 2 P0CG63 P47049 affinity chromatography technology 23749301 physical association X 2 P0CG63 P47049 affinity chromatography technology 17644757 physical association X 2 P47049 P38349 two hybrid 14755638 direct interaction X 2 P47049 Q06410 two hybrid 18719252 direct interaction X 2 P47049 Q05930 two hybrid 10688190 direct interaction X 2 P47049 P36068 two hybrid 10655498 physical association X 2 P47049 P36068 two hybrid pooling approach 11283351 physical association X 2 P47049 P36068 two hybrid 10688190 physical association X 2 P47049 P30283 two hybrid 10688190 physical association X 2 P47049 Q02794 two hybrid pooling approach 11283351 physical association X 2 P47049 Q05930 two hybrid 10688190 physical association X 2 P47049 anti tag coimmunoprecipitation 20489023 association C 14 P47049 P36068 two hybrid 10688190 physical association X 2 P47049 P30283 two hybrid 10688190 physical association X 2 P47049 P36068 two hybrid fragment pooling approach 11283351 physical association X 2 P47049 Q12146 two hybrid array 14690591 physical association X 2 P47049 P25694 two hybrid 15258615 physical association X 2 P47049 P25694 two hybrid 15258615 physical association X 2 P47049 P25694 anti tag coimmunoprecipitation 15258615 physical association X 2 P47049 tandem affinity purification 14660704 association C 103 P47049 Q05930 two hybrid 10688190 physical association X 2 P47049 Q02794 two hybrid fragment pooling approach 11283351 physical association X 2 P47049 Q06410 two hybrid 18719252 physical association X 2 P47049 P36068 two hybrid 10655498 - X 2 P47049 P36068 two hybrid 10688190 - X 2 P47049 P36068 two hybrid 10688190 - X 2 P47049 P36068 two hybrid 11283351 - X 2 P47049 Q05930 two hybrid 10688190 - X 2 P47049 Q02794 two hybrid 11283351 - X 2

PPI - HINT Gene A Gene B PMID Method Quality CDC48 UBX6 15258615,15258615,15258615,14755638 0018,0004,0007,0018 LC CLB5 UBX6 10688190 0018 HT DOA1 UBX6 14755638 0018 LC SHE2 UBX6 11283351,11283351,11283351,10688190,10655498,10688190 0018,0399,0398,0397,0018,0018 HT,LC UBX7 UBX6 14755638 0018 LC UBX6 STD1 11283351,11283351,11283351 0018,0399,0398 HT UBX6 MDM30 10688190,10688190 0397,0018 HT UBX6 ATG17 18719252 0018 HT UBX6 PSF3 14690591 0397 LC CDC48 UBX6 15258615,15258615,15258615,21211725 0018,0004,0007,0004 LC CLB5 UBX6 20489023,20489023 0007,0004 HT CRM1 UBX6 26673895,26673895 0096,0004 LC UBX6 INO80 26656161 0004 LC UBX6 GCN5 14660704 0676 HT

PPI - Mentha Protein A Protein B Gene A Gene B Score PMID P53115 P47049 INO80 UBX6 0.21 26656161 Q07807 P47049 PUF3 UBX6 0.236 26493364,23409723 P47049 P30822 UBX6 CRM1 0.236 26673895 P47049 P36068 UBX6 SHE2 0.569 10688190,11283351,10655498 P47049 P25694 UBX6 CDC48 0.794 14755638,15258615,21211725 P47049 P38349 UBX6 UBX7 0.309 14755638 P47049 P36037 UBX6 DOA1 0.309 14755638 P47049 P30283 UBX6 CLB5 0.436 10688190,20489023 Q02794 P47049 STD1 UBX6 0.21 11283351 Q05930 P47049 MDM30 UBX6 0.332 10688190 Q06410 P47049 ATG17 UBX6 0.332 18719252 Q12146 P47049 PSF3 UBX6 0.126 14690591 Q03330 P47049 GCN5 UBX6 0.126 14660704