iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-100059

Ensembl Protein ID

POPTR_0001s47350.1

UniProt Accession

B9GHI0; B9GHI0_POPTR

Genbank Protein ID

EEE83872.2

Protein Name

VARICOSE family protein

Genbank Nucleotide ID

CM000337

Gene Name

POPTRDRAFT_708158; POPTR_0001s47350g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0001s47350	POPTR_0001s47350.1	POPTR_0001s47350.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.60e-12	46.3	382	412

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtcl...af.sdtllvsGsdDgtikvWD 29
           H ++vt+l   ++ + t+lvs+s Dgtik+W+
   Q: 382  HDGEVTDLsmcQWmT-TRLVSASMDGTIKIWE 412
           899999973325655.99*************7 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MASPNPQHQH QQPQPQPPPF DMHKFFMPTS TPPPPQNPSS SPSPPPPNLI MIPPPQQIPS 60
SYPPSTGTHH FPHYPNFPFP FPPQQQQFQP PYPLQQNPNP SNPPPLANPQ RSLSYPTPPL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTTCCTTTCT CACTTGTCTT CTTCTCCCTC TTCTACTCCC TTCCTCTCCT CCCTCTCTCT 60
CGCCATGGCA TCCCCAAATC CCCAACATCA ACATCAACAA CCGCAACCAC AACCTCCTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR032401--EDC4_WD40
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF16529--Ge1_WD40

SMART

SM00320--WD40

Gene Ontology

GO:0000932--C:P-body
GO:0031087--P:deadenylation-independent decapping of nuclear-transcribed mRNA

KEGG

pop:POPTR_0001s47350g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005827	Arabidopsis lyrata	55.73	0.00e+00	1246.00
IUUC-Ath-006603	Arabidopsis thaliana	56.69	0.00e+00	1233.00
IUUC-Bol-015150	Brassica oleracea	52.21	0.00e+00	1118.00
IUUC-Bra-017673	Brassica rapa	52.14	0.00e+00	1131.00
IUUC-Gma-044374	Glycine max	61.06	0.00e+00	1357.00
IUUC-Lpe-051585	Leersia perrieri	50.45	0.00e+00	997.00
IUUC-Mtr-057751	Medicago truncatula	59.90	0.00e+00	1291.00
IUUC-Ppe-101310	Prunus persica	62.87	0.00e+00	1243.00
IUUC-Tca-121694	Theobroma cacao	60.08	0.00e+00	1404.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence