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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Ath-006811
Ensembl Protein ID AT1G31340.1
UniProt Accession Q9SHE7; O80715; P59263; Q0WQU3; Q38875; Q9LDJ2; Q9LYW1; Q9M0W3; Q9M1P9; Q9S7X3; RUB1_ARATH
Genbank Protein ID AAF24594.1; AEE31344.1; AAO64156.1; AAP04095.1; BAF00506.1
Protein Name Ubiquitin-NEDD8-like protein RUB1; Ubiquitin; NEDD8-like protein RUB1; Ubiquitin-related protein 1
Genbank Nucleotide ID AC007654; CP002684; BT005749; BT006110; AK228591
Gene Name RUB1; NEDD8; UBQ15; At1g31340; T19E23.13
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT1G31340 AT1G31340.1 AT1G31340.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndexPINAHINTMentha
Protein 3D Structure
PDBMMDB
Drug and target
SuperTarget
Post-translational Modifications (PTMs)
dbPPTdbPTM
Protein Expression/Proteomics
GPMDB
Status Reviewed
Details
Family Domain References (PMIDs)
ULD/UBL/NEDD8 NEDD8 9624055
Classification
Family E-value Score Start End
ULD/UBL/NEDD8 2.40e-86 284.9 78 152
ULD/UDP/UBQ/UBQ_PIM 9.20e-53 177.0 1 73
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   ULD/UBL/NEDD8
   S: 2    likvktLtgkeieieieesdtierikerveekeGiPPsqqrliyaGkqleddktaadynlekgsvLhLvLaLrGG 76
           +ikvktLtgkeiei+ie++dti+rikerveekeGiPP+qqrliyaGkql+ddkta+dyn+e+gsvLhLvLaLrGG
   Q: 78   MIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 152
           8*************************************************************************9 PP
   

   ULD/UDP/UBQ/UBQ_PIM
   S: 1    mkltvktlkgkefelevseddtveelKekiakesgvppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkk 73
           m+++vktl+gk+++lev+++dt+ ++K+ki+++ g+pp+qq+LI+aGk+L+D +tL +++i+++s++hlv++ 
   Q: 1    MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73
           99********************************************************************986 PP
   
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     NEDD8-like protein RUB1: Appears to function as a stable post-translational protein modifier. An AMP-RUB1 intermediate is formed by an activating enzyme, distinct from the ubiquitin activating enzyme E1, which is composed of a heterodimer AXR1/ECR1. Auxin response is mediated, at least in part, through modification of the cullin AtCUL1 by the attachment of RUB1 to 'Lys-692'.
 NEDD8-like protein RUB1: Appears to function as a stable post-translational protein modifier. An AMP-RUB1 intermediate is formed by an activating enzyme, distinct from the ubiquitin activating enzyme E1, which is composed of a heterodimer AXR1/ECR1. Auxin response is mediated, at least in part, through modification of the cullin AtCUL1 by the attachment of RUB1 to 'Lys-692'.
Protein Sequence
(Fasta)
MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN 60
IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID RIKERVEEKE GIPPVQQRLI 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-006811|ULD,NEDD8;ULD,UBQ_PIM|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
AAGAAATGGA GAAGAAATAA TAGCGTAGCC CAAAAGCTAA TTACGAATTC TATCAAAGGA 60
TTTATTCCAA ATCTTTCAAA AAGTATTTTT ATTCCAAAAT CCTCAAAACT ATATCCCAAA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-006811|ULD,NEDD8;ULD,UBQ_PIM|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0002--3D-structure
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-1017--Isopeptide bond
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0833--Ubl conjugation pathway
Interpro

IPR019956--Ubiquitin
IPR029071--Ubiquitin-rel_dom
IPR019954--Ubiquitin_CS
IPR000626--Ubiquitin_dom
PROSITE

PS00299--UBIQUITIN_1
PS50053--UBIQUITIN_2
Pfam

PF00240--ubiquitin
PRINTS

PR00348--UBIQUITIN
SMART

SM00213--UBQ
Gene Ontology

GO:0005829--C:cytosol
GO:0005634--C:nucleus
GO:0005886--C:plasma membrane
GO:0009693--P:ethylene biosynthetic process
GO:0045116--P:protein neddylation
GO:0009733--P:response to auxin
KEGG ath:AT1G31340
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aly-006536 Arabidopsis lyrata 99.36 7.00e-75 271.00
IUUC-Bdi-014376 Brachypodium distachyon 99.35 8.00e-74 268.00
IUUC-Bol-015848 Brassica oleracea 100.00 2.00e-73 266.00
IUUC-Cre-022655 Chlamydomonas reinhardtii 94.12 2.00e-72 263.00
IUUC-Cho-024788 Choloepus hoffmanni 83.12 3.00e-25 105.00
IUUC-Gma-042815 Glycine max 99.34 8.00e-73 265.00
IUUC-Mtr-058632 Medicago truncatula 82.97 3.00e-68 249.00
IUUC-Mac-064471 Musa acuminata 98.04 1.00e-72 264.00
IUUC-Obr-076856 Oryza brachyantha 100.00 2.00e-73 266.00
IUUC-Ogl-077485 Oryza glaberrima 99.35 8.00e-74 268.00
IUUC-Oin-079667 Oryza indica 99.35 8.00e-74 268.00
IUUC-Oru-084963 Oryza rufipogon 98.69 2.00e-73 267.00
IUUC-Osa-085928 Oryza sativa 99.35 8.00e-74 268.00
IUUC-Ppa-095604 Physcomitrella patens 94.08 3.00e-71 259.00
IUUC-Pop-099240 Populus trichocarpa 96.77 2.00e-74 270.00
IUUC-Ppe-101565 Prunus persica 98.68 1.00e-82 297.00
IUUC-Sit-110816 Setaria italica 99.35 8.00e-74 268.00
IUUC-Sly-111900 Solanum lycopersicum 100.00 2.00e-73 266.00
IUUC-Stu-112424 Solanum tuberosum 100.00 2.00e-73 266.00
IUUC-Sbi-114209 Sorghum bicolor 99.35 8.00e-74 268.00
IUUC-Tca-121816 Theobroma cacao 98.04 2.00e-72 263.00
IUUC-Tae-124562 Triticum aestivum 98.69 1.00e-73 267.00
IUUC-Tur-126780 Triticum urartu 98.69 1.00e-73 267.00
IUUC-Vvi-131310 Vitis vinifera 98.68 2.00e-72 263.00
Created Date 25-Jun-2017

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