iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UFD/PB1	6.00e-17	62.5	121	217

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UFD/PB1

   S: 4    vkvsykgeirsfaldlekpgkfedLlkavrt.lt.......................elknsevalkYeDedGDlvtlksDedldkavsllaskksll 77
           vkvs++g+++++++dl+ + +++dL +a+ + +                         l++s++ ++YeD+dGD++ l++D++++++v+      s++
   Q: 121  VKVSMDGAPYLRKIDLKLYKTYQDLSNALSKmFSsftignygpqgmkdfmnesklidLLNGSDYVPTYEDKDGDWM-LVGDVPWEMFVD------SCK 211
           9******************************622566999****************99999***************.************......*** PP
   S: 78   rlliqk 83
           r++i+k
   Q: 212  RIRIMK 217
           *****8 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Protein Sequence
(Fasta)

MINFEATELR LGLPGGNHGG EMAGKNNGKR GFSETVDLKL NLSSTAMDSV SKVDLENMKE 60
KVVKPPAKAQ VVGWPPVRSF RKNVMSGQKP TTGDATEGND KTSGSSGATS SASACATVAY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTTTTATGCG AGTGGTAAAA ATGATTCATA TTTCAAGTTT GATTAGAATT TATTTTGGGT 60
GGATAAATTC GACACAGAAA AGGAGAGACT GTGCCAAGTT GGCCTTTGCC CACTGGCTTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0927--Auxin signaling pathway
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR033389--AUX/IAA_dom
IPR003311--AUX_IAA
IPR000270--PB1_dom

PROSITE

PS51745--PB1

Pfam

PF02309--AUX_IAA

Gene Ontology

GO:0005634--C:nucleus
GO:0003700--F:transcription factor activity, sequence-specific DNA binding
GO:0009734--P:auxin-activated signaling pathway
GO:0009733--P:response to auxin
GO:0006351--P:transcription, DNA-templated

KEGG

ath:AT3G04730

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002559	Amborella trichopoda	61.85	2.00e-80	291.00
IUUC-Aly-006188	Arabidopsis lyrata	96.61	3.00e-108	383.00
IUUC-Bdi-014859	Brachypodium distachyon	54.01	6.00e-72	263.00
IUUC-Bol-016371	Brassica oleracea	90.68	5.00e-108	382.00
IUUC-Bra-016936	Brassica rapa	91.10	5.00e-109	385.00
IUUC-Hvu-047087	Hordeum vulgare	68.39	4.00e-65	239.00
IUUC-Lpe-050724	Leersia perrieri	46.12	2.00e-43	167.00
IUUC-Mtr-058641	Medicago truncatula	65.60	5.00e-80	289.00
IUUC-Mac-065450	Musa acuminata	59.74	2.00e-70	258.00
IUUC-Obr-076745	Oryza brachyantha	53.53	7.00e-66	243.00
IUUC-Ogl-077429	Oryza glaberrima	50.38	2.00e-61	227.00
IUUC-Ogu-078911	Oryza glumaepatula	55.63	6.00e-66	243.00
IUUC-Olo-080519	Oryza longistaminata	49.69	2.00e-40	157.00
IUUC-Pop-099218	Populus trichocarpa	70.04	6.00e-85	306.00
IUUC-Sit-110063	Setaria italica	58.15	2.00e-70	258.00
IUUC-Sly-111769	Solanum lycopersicum	69.57	1.00e-89	322.00
IUUC-Stu-112038	Solanum tuberosum	69.84	2.00e-87	314.00
IUUC-Sbi-114725	Sorghum bicolor	71.84	5.00e-66	243.00
IUUC-Tca-121532	Theobroma cacao	70.90	3.00e-90	323.00
IUUC-Tae-123775	Triticum aestivum	63.13	2.00e-63	234.00
IUUC-Tur-126762	Triticum urartu	49.43	2.00e-59	222.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence