iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Rno-105080

Ensembl Protein ID

ENSRNOP00000012440.6

UniProt Accession

A0A096MIS7; A0A096MIS7_RAT

Genbank Protein ID

ENSRNOP00000012440

Protein Name

Tudor domain-containing protein 3

Genbank Nucleotide ID

AABR07018723

Gene Name

Tdrd3

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000009034.7	ENSRNOT00000012440.7	ENSRNOP00000012440.6

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
microRNA	TRANSFAC	RAID2
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	5.90e-07	29.8	195	232

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 3    dedkleqlveMGFdreealqaLraannnleaAveyLld 40
           de +l  ++eMGF++e+ +qaL ++ nnleaA++ Ll+
   Q: 195  DEKALKHITEMGFSKEASRQALMDNANNLEAALNVLLN 232
           78999*******************************97 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MLRVQMTDGH TSCTAVEFSY ISKISLNTPP GTKVKLSGTV DIKNGFLLLS DSNTTVLGGE 60
VEHLIDKWAL QRSLLKHNRS NIGAEGGPPP FLPFGQKCAS TVQVDSRELD RRKTLQVSLP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCTGCGTG TGCAGATGAC GGACGGGCAC ACGAGTTGTA CTGCAGTAGA ATTCAGTTAC 60
ATTTCAAAGA TAAGGTGACT CATGTAACTT GTTAAGAGGA TCTGAGGGTG CTTTTCAAAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR013894--RMI1_N
IPR010304--Survival_motor_neuron
IPR002999--Tudor
IPR015940--UBA
IPR009060--UBA-like

PROSITE

PS50304--TUDOR
PS50030--UBA

Pfam

PF08585--RMI1_N
PF06003--SMN
PF00627--UBA

SMART

SM00333--TUDOR
SM00165--UBA

Gene Ontology

GO:0005737--C:cytoplasm
GO:0035145--C:exon-exon junction complex
GO:0003682--F:chromatin binding
GO:0003723--F:RNA binding
GO:0003713--F:transcription coactivator activity
GO:0006397--P:mRNA processing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000323	Aegilops tauschii	34.69	4.00e-12	65.50
IUUC-Aml-001751	Ailuropoda melanoleuca	82.85	0.00e+00	1017.00
IUUC-Atr-002788	Amborella trichopoda	32.63	6.00e-12	65.50
IUUC-Apl-004055	Anas platyrhynchos	69.48	0.00e+00	803.00
IUUC-Aca-004367	Anolis carolinensis	65.64	0.00e+00	791.00
IUUC-Aly-006072	Arabidopsis lyrata	39.13	2.00e-14	73.60
IUUC-Ath-007491	Arabidopsis thaliana	38.04	7.00e-14	71.60
IUUC-Ame-011439	Astyanax mexicanus	57.39	2.00e-73	270.00
IUUC-Bta-012894	Bos taurus	81.87	0.00e+00	1009.00
IUUC-Bdi-014462	Brachypodium distachyon	35.71	2.00e-13	70.50
IUUC-Bol-015343	Brassica oleracea	35.05	6.00e-13	68.60
IUUC-Bra-016787	Brassica rapa	34.02	9.00e-13	67.80
IUUC-Cel-018154	Caenorhabditis elegans	30.97	1.00e-17	85.10
IUUC-Cja-019364	Callithrix jacchus	83.72	0.00e+00	1046.00
IUUC-Cfa-021166	Canis familiaris	81.80	0.00e+00	981.00
IUUC-Cpo-021678	Cavia porcellus	76.02	0.00e+00	855.00
IUUC-Csa-023299	Chlorocebus sabaeus	83.56	0.00e+00	1073.00
IUUC-Cho-024694	Choloepus hoffmanni	82.57	1.00e-126	447.00
IUUC-Cin-025191	Ciona intestinalis	39.72	7.00e-22	97.10
IUUC-Csv-026348	Ciona savignyi	49.02	1.00e-11	60.80
IUUC-Dre-028715	Danio rerio	44.51	6.00e-129	454.00
IUUC-Dno-030091	Dasypus novemcinctus	80.34	0.00e+00	1002.00
IUUC-Dor-030807	Dipodomys ordii	73.73	0.00e+00	879.00
IUUC-Dme-031770	Drosophila melanogaster	29.31	7.00e-22	99.40
IUUC-Ete-032507	Echinops telfairi	60.77	1.00e-170	593.00
IUUC-Eca-033406	Equus caballus	81.68	0.00e+00	892.00
IUUC-Eeu-034600	Erinaceus europaeus	73.12	0.00e+00	851.00
IUUC-Fca-035916	Felis catus	82.95	0.00e+00	1019.00
IUUC-Fal-036658	Ficedula albicollis	68.10	0.00e+00	771.00
IUUC-Gmo-038974	Gadus morhua	52.12	2.00e-73	270.00
IUUC-Gga-040195	Gallus gallus	69.02	0.00e+00	832.00
IUUC-Gac-042537	Gasterosteus aculeatus	43.18	5.00e-121	428.00
IUUC-Gma-044234	Glycine max	36.45	6.00e-15	75.50
IUUC-Ggo-044715	Gorilla gorilla	83.00	0.00e+00	1066.00
IUUC-Hsa-045814	Homo sapiens	84.18	0.00e+00	1078.00
IUUC-Hvu-047365	Hordeum vulgare	31.06	2.00e-13	70.90
IUUC-Itr-047866	Ictidomys tridecemlineatus	82.95	0.00e+00	1033.00
IUUC-Lch-050393	Latimeria chalumnae	57.36	0.00e+00	627.00
IUUC-Lpe-050691	Leersia perrieri	31.37	4.00e-14	72.40
IUUC-Loc-052859	Lepisosteus oculatus	53.25	8.00e-154	537.00
IUUC-Laf-053953	Loxodonta africana	80.24	0.00e+00	744.00
IUUC-Mcc-055846	Macaca mulatta	84.02	0.00e+00	1078.00
IUUC-Meu-056790	Macropus eugenii	69.97	2.00e-139	489.00
IUUC-Mtr-058749	Medicago truncatula	38.46	2.00e-13	70.50
IUUC-Mla-058959	Melampsora laricipopulina	43.08	1.00e-07	50.40
IUUC-Mga-059656	Meleagris gallopavo	69.02	0.00e+00	773.00
IUUC-Mmr-061089	Microcebus murinus	81.56	0.00e+00	964.00
IUUC-Mdo-063043	Monodelphis domestica	63.39	0.00e+00	655.00
IUUC-Mmu-063654	Mus musculus	89.86	0.00e+00	1053.00
IUUC-Mac-064947	Musa acuminata	39.80	7.00e-09	55.10
IUUC-Mpu-066115	Mustela putorius furo	82.06	0.00e+00	913.00
IUUC-Mlu-066974	Myotis lucifugus	81.73	0.00e+00	954.00
IUUC-Nle-069184	Nomascus leucogenys	83.56	0.00e+00	1069.00
IUUC-Opr-070770	Ochotona princeps	74.35	0.00e+00	915.00
IUUC-Ont-072040	Oreochromis niloticus	56.70	7.00e-97	348.00
IUUC-Oan-073448	Ornithorhynchus anatinus	82.45	5.00e-62	229.00
IUUC-Ocu-074405	Oryctolagus cuniculus	83.56	0.00e+00	1026.00
IUUC-Oba-075977	Oryza barthii	36.73	6.00e-08	52.00
IUUC-Obr-076298	Oryza brachyantha	32.47	4.00e-15	75.90
IUUC-Ogl-077706	Oryza glaberrima	36.73	4.00e-08	52.80
IUUC-Ogu-078381	Oryza glumaepatula	36.73	2.00e-08	53.10
IUUC-Oin-080150	Oryza indica	36.73	3.00e-08	52.80
IUUC-Ome-081153	Oryza meridionalis	32.03	4.00e-08	52.80
IUUC-Oni-083115	Oryza nivara	36.73	8.00e-08	51.20
IUUC-Opu-083860	Oryza punctata	35.71	1.00e-12	68.20
IUUC-Oru-084859	Oryza rufipogon	36.73	4.00e-08	52.40
IUUC-Osa-085567	Oryza sativa	35.42	7.00e-07	48.50
IUUC-Ola-087049	Oryzias latipes	45.35	1.00e-129	457.00
IUUC-Olu-087829	Ostreococcus lucimarinus	44.83	1.60e+00	26.60
IUUC-Oga-088455	Otolemur garnettii	82.49	0.00e+00	1034.00
IUUC-Oar-090096	Ovis aries	81.57	0.00e+00	1012.00
IUUC-Ptr-090974	Pan troglodytes	83.72	0.00e+00	1071.00
IUUC-Pan-092657	Papio anubis	83.41	0.00e+00	1071.00
IUUC-Psi-093113	Pelodiscus sinensis	69.22	0.00e+00	848.00
IUUC-Ppa-095466	Physcomitrella patens	38.30	4.00e-15	76.30
IUUC-Pfo-096631	Poecilia formosa	56.57	9.00e-94	338.00
IUUC-Pab-098070	Pongo abelii	84.02	0.00e+00	1077.00
IUUC-Pop-099235	Populus trichocarpa	34.38	1.00e-12	67.80
IUUC-Pca-101032	Procavia capensis	73.58	0.00e+00	914.00
IUUC-Ppe-101793	Prunus persica	36.46	2.00e-14	73.90
IUUC-Pva-102290	Pteropus vampyrus	82.18	0.00e+00	1021.00
IUUC-Sha-107598	Sarcophilus harrisii	72.21	0.00e+00	870.00
IUUC-Smo-109586	Selaginella moellendorffii	36.36	9.00e-03	34.30
IUUC-Sit-110735	Setaria italica	40.82	2.00e-14	73.60
IUUC-Sly-111126	Solanum lycopersicum	36.96	3.00e-13	69.70
IUUC-Stu-112780	Solanum tuberosum	37.89	3.00e-15	76.30
IUUC-Sar-113418	Sorex araneus	79.88	0.00e+00	962.00
IUUC-Sbi-113925	Sorghum bicolor	38.78	6.00e-14	72.00
IUUC-Sre-114917	Sporisorium reilianum	38.14	2.00e-07	50.40
IUUC-Ssc-115712	Sus scrofa	82.21	0.00e+00	1016.00
IUUC-Tgu-117148	Taeniopygia guttata	69.22	0.00e+00	818.00
IUUC-Tru-117831	Takifugu rubripes	56.94	4.00e-93	335.00
IUUC-Tsy-118917	Tarsius syrichta	81.38	0.00e+00	976.00
IUUC-Tni-120783	Tetraodon nigroviridis	53.82	9.00e-91	328.00
IUUC-Tca-121430	Theobroma cacao	46.51	3.00e-06	46.60
IUUC-Tae-123752	Triticum aestivum	34.69	3.00e-12	66.20
IUUC-Tur-126238	Triticum urartu	35.71	5.00e-13	68.60
IUUC-Ttr-128615	Tursiops truncatus	76.62	0.00e+00	924.00
IUUC-Vpa-130531	Vicugna pacos	83.26	0.00e+00	1032.00
IUUC-Vvi-131607	Vitis vinifera	41.11	6.00e-13	68.60
IUUC-Xtr-132787	Xenopus tropicalis	53.75	1.00e-170	593.00
IUUC-Xma-133815	Xiphophorus maculatus	44.84	2.00e-126	446.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence