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Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Cel-018151
UUCD1 version UUC-CaE-00379
Ensembl Protein ID F28C6.3
UniProt Accession Q19864; Q19864_CAEEL
Genbank Protein ID CAA92670.1
Protein Name Cleavage and Polyadenylation Factor
Genbank Nucleotide ID BX284602
Gene Name cpf-1; CELE_F28C6.3; F28C6.3
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
WBGene00000773 F28C6.3 F28C6.3
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
microRNARAID2
Protein-protein Interaction
IID
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 3.00e-27 93.8 257 294
UBD/Beta-Prp 9.30e-56 189.5 107 424
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtll.vsGsdDgtikvWDlrtgvll 36
    +Ht+svt++++ + +l v++s Dg +k+WD +++++
   Q: 257 QHTESVTDVHYseN-ARLyVTASKDGHVKIWDGVSNRCV 294
    5**********643.4555*************9998887 PP
   


   UBD/Beta-Prp

   S: 8    hhksvitcvkfspdksllatgsrdgtikvwdvttgkl...................lrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvht 89
    hk+++++ +f d+sl+atgs+d +ik+ dv++ + +r+l++h + v++v f+p+++il++gs+D+t+k++d+s+ +
   Q: 107 VHKAPCRAAAFNSDGSLVATGSADCSIKIMDVERILArekehremnengpdahhpvIRTLYDHVDDVNTVIFHPRDSILISGSNDKTVKLFDFSKTAVKKA 207
    699*******************************877*********************************************************6555555 PP
   S: 90 lk..ghedsvlslsfspsgdklvsGshdrtirvwdletgqclee..tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtd.svys 185
    +k + + v++ls +p g++l++++++ t+r++++et q + + ++++h+++v+ v+++++++l+v++s+D+ v++Wd ++++++t++ +h++ s+ s
   Q: 208 MKtlSEVYPVRALSCHPGGEFLLVATDHPTVRLYNIETAQAYASanPDDQHTESVTDVHYSENARLYVTASKDGHVKIWDGVSNRCVETFKRAHDGsSICS 308
    553348899********99***********************9999********************************************66666527899 PP
   S: 186 lsfdsngkelvsgsldgtvklwdlqtgecvrtlnght.....dnvksvrfspnderlvsgssDgsiri..Wdlrsgdllktlqlhnssvisvavlsfgdnv 279
    +f++ngk++++ ++d+ vklw+l+t++c+ ++g d+ + f ++e +v +++s ++ Wd r++d + l+l ++s v+s++ +
   Q: 309 AKFTKNGKYILTSGMDSIVKLWELSTNRCLIVYTGAGatgaqDFATNASFN-HNEDYVLFPDEKSGSMcsWDARNSDRKRLLALGHTSACRTFVHSPSMPA 408
    99***************************7777776544554666666666.889999999776655555******************999999******* PP
   S: 280 lvlgsedskvniwklk 295
    +++gs+d ++++w k
   Q: 409 FMTGSDDHRARFWYRK 424
    *************865 PP
   

Organism Caenorhabditis elegans
Protein Sequence
(Fasta)
MKPDIKDREY MYRLIIGQLF YDGHQQIAVN LANTLGCSAP APPPSDKLFR LVTIAKQFVE 60
DPDYKAEEKS SPMQFEPVSS GLDLEYDADV QPVSSEPSEY ETIYLTVHKA PCRAAAFNSD 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Cel-018151|E3,WD_repeat;UBD,Beta-Prp|Caenorhabditis elegans
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GCAAGGAATT TATTGCGCTT TGAGGATTTT CGAATATTTA TTCAAGGAAA CATACTTTAA 60
TAATGAAGCC AGATATCAAA GATCGTGAAT ACATGTATCG GCTGATTATT GGGTAAGTTA 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Cel-018151|E3,WD_repeat;UBD,Beta-Prp|Caenorhabditis elegans
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR032028--CSTF1_dimer
IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF16699--CSTF1_dimer
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

KEGG cel:CELE_F28C6.3
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-002163 Ailuropoda melanoleuca 52.20 6.00e-134 469.00
IUUC-Atr-002687 Amborella trichopoda 37.93 2.00e-59 222.00
IUUC-Apl-003438 Anas platyrhynchos 52.44 5.00e-135 472.00
IUUC-Aca-005178 Anolis carolinensis 52.20 1.00e-134 471.00
IUUC-Aly-005791 Arabidopsis lyrata 40.12 1.00e-68 252.00
IUUC-Ath-006689 Arabidopsis thaliana 40.43 4.00e-69 253.00
IUUC-Ame-011217 Astyanax mexicanus 56.79 4.00e-98 349.00
IUUC-Bta-012619 Bos taurus 52.20 6.00e-134 469.00
IUUC-Bdi-014515 Brachypodium distachyon 41.18 1.00e-67 249.00
IUUC-Bra-017450 Brassica rapa 36.57 4.00e-65 240.00
IUUC-Cja-019304 Callithrix jacchus 52.20 3.00e-134 469.00
IUUC-Cfa-020208 Canis familiaris 52.20 6.00e-134 469.00
IUUC-Cpo-022245 Cavia porcellus 52.20 6.00e-134 469.00
IUUC-Csa-023066 Chlorocebus sabaeus 52.20 3.00e-134 469.00
IUUC-Cho-024770 Choloepus hoffmanni 57.22 1.00e-124 437.00
IUUC-Cin-025621 Ciona intestinalis 48.03 3.00e-119 420.00
IUUC-Csv-026071 Ciona savignyi 49.19 2.00e-122 431.00
IUUC-Dre-028254 Danio rerio 52.20 5.00e-132 462.00
IUUC-Dno-029903 Dasypus novemcinctus 52.20 6.00e-134 469.00
IUUC-Dor-030423 Dipodomys ordii 52.20 8.00e-134 468.00
IUUC-Dme-031993 Drosophila melanogaster 49.05 4.00e-120 423.00
IUUC-Ete-032689 Echinops telfairi 45.45 2.00e-30 125.00
IUUC-Eca-033316 Equus caballus 51.97 1.00e-133 468.00
IUUC-Eeu-035001 Erinaceus europaeus 53.16 3.00e-134 470.00
IUUC-Fca-036447 Felis catus 52.20 6.00e-134 469.00
IUUC-Fal-037601 Ficedula albicollis 52.44 5.00e-135 472.00
IUUC-Gmo-038531 Gadus morhua 52.29 4.00e-131 459.00
IUUC-Gga-040869 Gallus gallus 52.20 2.00e-134 471.00
IUUC-Gac-042380 Gasterosteus aculeatus 52.06 1.00e-131 461.00
IUUC-Gma-043478 Glycine max 36.69 3.00e-70 257.00
IUUC-Ggo-045302 Gorilla gorilla 52.20 3.00e-134 469.00
IUUC-Hsa-045678 Homo sapiens 52.20 3.00e-134 469.00
IUUC-Hvu-047301 Hordeum vulgare 41.11 2.00e-70 258.00
IUUC-Itr-048259 Ictidomys tridecemlineatus 52.20 6.00e-134 469.00
IUUC-Lch-050319 Latimeria chalumnae 51.72 4.00e-133 466.00
IUUC-Lpe-051440 Leersia perrieri 39.03 4.00e-58 217.00
IUUC-Loc-052035 Lepisosteus oculatus 53.13 2.00e-134 470.00
IUUC-Laf-054275 Loxodonta africana 52.20 6.00e-134 469.00
IUUC-Mcc-055857 Macaca mulatta 46.05 8.00e-111 392.00
IUUC-Meu-056194 Macropus eugenii 58.21 2.00e-40 157.00
IUUC-Mtr-058667 Medicago truncatula 34.57 1.00e-64 238.00
IUUC-Mga-059710 Meleagris gallopavo 52.20 2.00e-134 471.00
IUUC-Mmr-060604 Microcebus murinus 52.20 6.00e-134 469.00
IUUC-Mdo-062953 Monodelphis domestica 52.20 5.00e-134 469.00
IUUC-Mmu-064292 Mus musculus 51.97 9.00e-134 468.00
IUUC-Mac-064568 Musa acuminata 40.61 3.00e-70 257.00
IUUC-Mpu-066294 Mustela putorius furo 38.24 3.00e-83 300.00
IUUC-Mlu-067995 Myotis lucifugus 51.86 5.00e-132 462.00
IUUC-Nle-069322 Nomascus leucogenys 52.20 3.00e-134 469.00
IUUC-Opr-070580 Ochotona princeps 52.20 9.00e-134 468.00
IUUC-Ont-072554 Oreochromis niloticus 53.13 6.00e-135 472.00
IUUC-Oan-072856 Ornithorhynchus anatinus 51.97 8.00e-134 468.00
IUUC-Ocu-074150 Oryctolagus cuniculus 45.45 5.00e-106 376.00
IUUC-Oba-075585 Oryza barthii 37.22 1.00e-61 229.00
IUUC-Obr-076069 Oryza brachyantha 40.84 2.00e-66 245.00
IUUC-Ogl-077045 Oryza glaberrima 40.54 5.00e-70 256.00
IUUC-Ogu-078697 Oryza glumaepatula 40.74 2.00e-65 243.00
IUUC-Oin-080119 Oryza indica 40.54 5.00e-70 256.00
IUUC-Olo-081093 Oryza longistaminata 30.54 2.00e-39 156.00
IUUC-Ome-081718 Oryza meridionalis 34.23 5.00e-51 194.00
IUUC-Oni-082072 Oryza nivara 37.22 1.00e-61 229.00
IUUC-Opu-084080 Oryza punctata 34.83 8.00e-52 196.00
IUUC-Oru-085070 Oryza rufipogon 37.18 9.00e-61 228.00
IUUC-Osa-086149 Oryza sativa 40.54 5.00e-70 256.00
IUUC-Ola-086697 Oryzias latipes 52.44 9.00e-134 468.00
IUUC-Oga-088697 Otolemur garnettii 52.20 6.00e-134 469.00
IUUC-Oar-089774 Ovis aries 52.20 6.00e-134 469.00
IUUC-Ptr-090924 Pan troglodytes 52.20 3.00e-134 469.00
IUUC-Pan-092373 Papio anubis 52.20 5.00e-134 469.00
IUUC-Psi-094001 Pelodiscus sinensis 52.44 2.00e-134 471.00
IUUC-Pma-094274 Petromyzon marinus 53.01 1.00e-134 471.00
IUUC-Ppa-095562 Physcomitrella patens 39.15 5.00e-71 260.00
IUUC-Pfo-097235 Poecilia formosa 53.13 1.00e-134 471.00
IUUC-Pab-098608 Pongo abelii 52.20 3.00e-134 469.00
IUUC-Pca-100268 Procavia capensis 52.20 6.00e-134 469.00
IUUC-Ppe-101425 Prunus persica 39.60 7.00e-71 259.00
IUUC-Pva-103183 Pteropus vampyrus 52.20 6.00e-134 469.00
IUUC-Rno-105097 Rattus norvegicus 51.97 9.00e-134 468.00
IUUC-Sha-107642 Sarcophilus harrisii 52.20 5.00e-134 469.00
IUUC-Smo-108680 Selaginella moellendorffii 40.57 5.00e-68 250.00
IUUC-Sit-110471 Setaria italica 41.62 1.00e-70 259.00
IUUC-Sly-111143 Solanum lycopersicum 32.33 6.00e-30 122.00
IUUC-Stu-111926 Solanum tuberosum 37.89 6.00e-27 112.00
IUUC-Sar-112947 Sorex araneus 57.30 7.00e-92 328.00
IUUC-Sbi-113769 Sorghum bicolor 41.11 4.00e-69 253.00
IUUC-Ssc-115736 Sus scrofa 52.20 6.00e-134 469.00
IUUC-Tgu-117457 Taeniopygia guttata 52.44 5.00e-135 472.00
IUUC-Tru-117760 Takifugu rubripes 53.60 2.00e-135 474.00
IUUC-Tsy-118943 Tarsius syrichta 51.97 2.00e-130 457.00
IUUC-Tni-120081 Tetraodon nigroviridis 53.83 7.00e-136 475.00
IUUC-Tca-121190 Theobroma cacao 36.68 8.00e-72 263.00
IUUC-Tae-125535 Triticum aestivum 43.03 1.00e-73 269.00
IUUC-Tur-126329 Triticum urartu 42.41 2.00e-73 269.00
IUUC-Tbe-127878 Tupaia belangeri 51.89 1.00e-129 454.00
IUUC-Ttr-128985 Tursiops truncatus 52.20 6.00e-134 469.00
IUUC-Vpa-130147 Vicugna pacos 52.20 1.00e-133 468.00
IUUC-Vvi-130935 Vitis vinifera 41.19 6.00e-72 263.00
IUUC-Xtr-132482 Xenopus tropicalis 51.28 2.00e-132 464.00
IUUC-Xma-133929 Xiphophorus maculatus 53.13 1.00e-134 471.00
Created Date 25-Jun-2017

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