iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWD 29
           H+  +  l+f  +  t+l ++s+D+ i +WD
   Q: 392  HKKAIATLCFspTHeTHLFTASYDKRIILWD 422
           88889999***6447**************** PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MAPLTPQLLL QRGRPKTDRL GKIQSLNLSG LELLSEHLDP NLLGRLKKLK ELDLSNNLLE 60
TLPANLGLSH LRILRCTNNQ LGDVTTLHQF PELEELSLEG NPFLTVSDNL KVSFLLPKLR 120

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Nucleotide Sequence
(Fasta)

CAGGGGTTAG GGAGTACGGC TGGCGTTCTG CTTCCTTCCG GTCCCCTGGA CTCTCAAAGG 60
GTTTGTTGTG CGCCACCTCC TGGGCTCCCC AGCATCCGGC CTTAGTGACC AGACTTCGTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0433--Leucine-rich repeat
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR032675--L_dom-like
IPR001611--Leu-rich_rpt
IPR025875--Leu-rich_rpt_4
IPR003591--Leu-rich_rpt_typical-subtyp
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS51450--LRR
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12799--LRR_4

SMART

SM00369--LRR_TYP
SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0000776--C:kinetochore
GO:0005664--C:nuclear origin of replication recognition complex
GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0005721--C:pericentric heterochromatin
GO:0031933--C:telomeric heterochromatin
GO:0003682--F:chromatin binding
GO:0008327--F:methyl-CpG binding
GO:0006325--P:chromatin organization
GO:0071169--P:establishment of protein localization to chromatin

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001948	Ailuropoda melanoleuca	76.74	3.00e-177	615.00
IUUC-Bta-012858	Bos taurus	74.03	0.00e+00	929.00
IUUC-Cja-019702	Callithrix jacchus	78.36	0.00e+00	941.00
IUUC-Cfa-020910	Canis familiaris	78.27	0.00e+00	967.00
IUUC-Cpo-022523	Cavia porcellus	75.50	0.00e+00	994.00
IUUC-Csa-023359	Chlorocebus sabaeus	78.05	0.00e+00	969.00
IUUC-Dno-029426	Dasypus novemcinctus	77.86	0.00e+00	942.00
IUUC-Dor-030654	Dipodomys ordii	74.49	0.00e+00	791.00
IUUC-Eca-034035	Equus caballus	77.47	0.00e+00	957.00
IUUC-Eeu-034711	Erinaceus europaeus	73.49	4.00e-163	568.00
IUUC-Gmo-039096	Gadus morhua	35.50	5.00e-111	395.00
IUUC-Ggo-044714	Gorilla gorilla	77.90	0.00e+00	937.00
IUUC-Hsa-046826	Homo sapiens	78.21	0.00e+00	939.00
IUUC-Laf-054449	Loxodonta africana	78.09	0.00e+00	972.00
IUUC-Mcc-055193	Macaca mulatta	78.52	0.00e+00	944.00
IUUC-Mmr-061572	Microcebus murinus	76.82	0.00e+00	977.00
IUUC-Mmu-063240	Mus musculus	90.45	0.00e+00	1120.00
IUUC-Mpu-066295	Mustela putorius furo	77.74	0.00e+00	965.00
IUUC-Mlu-067766	Myotis lucifugus	78.05	0.00e+00	991.00
IUUC-Nle-069200	Nomascus leucogenys	75.89	0.00e+00	876.00
IUUC-Ola-086965	Oryzias latipes	42.64	4.00e-86	312.00
IUUC-Oga-088411	Otolemur garnettii	72.79	0.00e+00	957.00
IUUC-Oar-089415	Ovis aries	74.19	0.00e+00	869.00
IUUC-Ptr-090663	Pan troglodytes	78.05	0.00e+00	938.00
IUUC-Pan-092467	Papio anubis	77.35	0.00e+00	922.00
IUUC-Pab-098479	Pongo abelii	78.67	0.00e+00	945.00
IUUC-Pca-101023	Procavia capensis	66.41	0.00e+00	771.00
IUUC-Pva-102812	Pteropus vampyrus	74.81	0.00e+00	943.00
IUUC-Ssc-115884	Sus scrofa	78.52	0.00e+00	1008.00
IUUC-Tbe-127247	Tupaia belangeri	77.66	1.00e-118	420.00
IUUC-Ttr-128723	Tursiops truncatus	78.21	0.00e+00	982.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence