iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	24.84	3.00e-07	55.10	IUUC-Hsa-046702

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MDPPVSDLES IEDQKEGGPS FHCDLYDTQV VHKIAQVFLP GLATACVDNT TGDIFRSPGS 60
VAADIRKEMI EYLTRRSETF VAEHIVLQGG SEIEASHDPF DIISDFIDDF ATSKRNLFSR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATAAAAAAAT AAAAATAAAG GAGGAGAGAG TCCGTTTTTA ATAGAAGAGG CGACGAAGTT 60
GTGGTAAAAG AGAAAAAGAG ACCCGTTTAT TGCGCCAAAA CCAGAGAGGT GCTTCTCTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR008974--TRAF-like
IPR013083--Znf_RING/FYVE/PHD
IPR001293--Znf_TRAF

PROSITE

PS50145--ZF_TRAF

Pfam

PF02176--zf-TRAF

Gene Ontology

GO:0009507--C:chloroplast
GO:0009941--C:chloroplast envelope
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding

KEGG

ath:AT3G11950

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000797	Aegilops tauschii	43.57	2.00e-82	298.00
IUUC-Aml-001288	Ailuropoda melanoleuca	24.53	1.00e-07	50.80
IUUC-Atr-003147	Amborella trichopoda	51.12	1.00e-97	348.00
IUUC-Aca-004687	Anolis carolinensis	25.71	8.00e-08	51.20
IUUC-Aly-006415	Arabidopsis lyrata	92.50	0.00e+00	890.00
IUUC-Ame-010645	Astyanax mexicanus	29.45	6.00e-07	48.50
IUUC-Bta-012558	Bos taurus	23.19	6.00e-08	52.00
IUUC-Bdi-014180	Brachypodium distachyon	43.11	3.00e-79	287.00
IUUC-Bol-015913	Brassica oleracea	59.36	0.00e+00	725.00
IUUC-Bra-017948	Brassica rapa	65.53	0.00e+00	752.00
IUUC-Cja-019589	Callithrix jacchus	23.40	5.00e-08	52.00
IUUC-Cfa-020639	Canis familiaris	31.25	1.00e-09	57.00
IUUC-Cpo-021878	Cavia porcellus	24.84	2.00e-08	53.10
IUUC-Csa-024172	Chlorocebus sabaeus	24.22	2.00e-08	53.50
IUUC-Cho-024532	Choloepus hoffmanni	22.56	2.00e-06	47.00
IUUC-Dre-027557	Danio rerio	28.30	3.00e-07	49.70
IUUC-Dno-029458	Dasypus novemcinctus	28.57	6.00e-07	48.50
IUUC-Dor-030469	Dipodomys ordii	22.50	4.00e-08	52.40
IUUC-Ete-032910	Echinops telfairi	21.05	2.00e-05	43.90
IUUC-Eca-033786	Equus caballus	23.60	3.00e-07	49.30
IUUC-Fca-036026	Felis catus	23.73	2.00e-07	50.10
IUUC-Fal-036842	Ficedula albicollis	27.37	1.00e-10	60.80
IUUC-Gmo-039061	Gadus morhua	27.34	1.00e-08	54.30
IUUC-Gga-040519	Gallus gallus	27.27	3.00e-11	62.80
IUUC-Gma-042951	Glycine max	56.98	2.00e-122	432.00
IUUC-Ggo-044762	Gorilla gorilla	24.53	6.00e-08	52.00
IUUC-Hsa-046702	Homo sapiens	24.84	1.00e-08	54.30
IUUC-Hvu-047127	Hordeum vulgare	45.70	2.00e-85	308.00
IUUC-Itr-048232	Ictidomys tridecemlineatus	31.68	9.00e-07	47.80
IUUC-Lpe-051100	Leersia perrieri	45.37	1.00e-85	309.00
IUUC-Loc-052170	Lepisosteus oculatus	26.12	5.00e-12	65.50
IUUC-Laf-053476	Loxodonta africana	21.83	1.00e-07	50.40
IUUC-Mcc-054878	Macaca mulatta	24.22	2.00e-08	53.50
IUUC-Meu-055909	Macropus eugenii	29.07	3.00e-04	40.00
IUUC-Mga-060145	Meleagris gallopavo	26.97	3.00e-11	62.40
IUUC-Mmr-061198	Microcebus murinus	31.68	1.00e-06	47.40
IUUC-Mdo-062585	Monodelphis domestica	33.66	4.00e-07	48.90
IUUC-Mmu-064303	Mus musculus	30.69	2.00e-06	46.20
IUUC-Mac-064529	Musa acuminata	52.49	6.00e-101	360.00
IUUC-Mpu-066854	Mustela putorius furo	32.67	5.00e-07	48.50
IUUC-Mlu-067192	Myotis lucifugus	26.09	1.00e-09	57.40
IUUC-Nle-069250	Nomascus leucogenys	24.22	3.00e-08	52.80
IUUC-Opr-071122	Ochotona princeps	26.87	6.00e-06	45.10
IUUC-Ont-072459	Oreochromis niloticus	30.25	7.00e-09	55.10
IUUC-Ocu-073755	Oryctolagus cuniculus	23.60	2.00e-07	50.40
IUUC-Oba-075457	Oryza barthii	45.43	3.00e-87	314.00
IUUC-Obr-076500	Oryza brachyantha	46.57	2.00e-92	331.00
IUUC-Ogl-077708	Oryza glaberrima	44.18	3.00e-87	314.00
IUUC-Ogu-078803	Oryza glumaepatula	45.16	1.00e-86	312.00
IUUC-Oin-079307	Oryza indica	47.11	1.00e-84	306.00
IUUC-Olo-080508	Oryza longistaminata	47.13	5.00e-85	306.00
IUUC-Ome-081269	Oryza meridionalis	44.18	8.00e-88	316.00
IUUC-Oni-082966	Oryza nivara	44.71	1.00e-86	312.00
IUUC-Opu-083468	Oryza punctata	44.78	9.00e-88	316.00
IUUC-Oru-085055	Oryza rufipogon	45.16	2.00e-86	311.00
IUUC-Osa-085780	Oryza sativa	46.81	6.00e-84	303.00
IUUC-Ola-087319	Oryzias latipes	33.98	7.00e-10	58.20
IUUC-Olu-087748	Ostreococcus lucimarinus	29.21	9.00e-20	90.50
IUUC-Oar-090003	Ovis aries	28.36	3.00e-07	49.70
IUUC-Ptr-091465	Pan troglodytes	24.22	2.00e-08	53.10
IUUC-Pan-092301	Papio anubis	24.22	2.00e-08	53.50
IUUC-Psi-093956	Pelodiscus sinensis	29.10	5.00e-09	55.50
IUUC-Pma-094463	Petromyzon marinus	30.70	3.00e-07	48.90
IUUC-Pfo-096912	Poecilia formosa	31.97	9.00e-09	54.70
IUUC-Pab-097604	Pongo abelii	24.22	2.00e-08	53.50
IUUC-Pop-099898	Populus trichocarpa	62.67	4.00e-139	487.00
IUUC-Pca-100958	Procavia capensis	26.71	3.00e-07	48.50
IUUC-Ppe-101547	Prunus persica	52.28	2.00e-112	399.00
IUUC-Pva-102112	Pteropus vampyrus	23.60	7.00e-08	51.60
IUUC-Rno-105077	Rattus norvegicus	20.45	8.00e-08	51.20
IUUC-Sha-107492	Sarcophilus harrisii	23.63	2.00e-09	57.00
IUUC-Sit-109710	Setaria italica	41.90	6.00e-74	270.00
IUUC-Sbi-113900	Sorghum bicolor	44.78	3.00e-88	317.00
IUUC-Ssc-116427	Sus scrofa	24.22	3.00e-08	52.80
IUUC-Tgu-117408	Taeniopygia guttata	29.80	6.00e-10	58.50
IUUC-Tru-117964	Takifugu rubripes	30.56	5.00e-07	48.90
IUUC-Tsy-119571	Tarsius syrichta	24.07	2.00e-05	43.10
IUUC-Tur-126067	Triticum urartu	43.30	1.00e-80	291.00
IUUC-Tbe-127412	Tupaia belangeri	22.98	2.00e-07	50.10
IUUC-Ttr-128492	Tursiops truncatus	24.22	5.00e-08	52.00
IUUC-Vpa-130751	Vicugna pacos	30.39	1.00e-06	47.00
IUUC-Vvi-131070	Vitis vinifera	62.53	2.00e-141	494.00
IUUC-Xtr-132721	Xenopus tropicalis	24.84	4.00e-06	45.80
IUUC-Xma-133132	Xiphophorus maculatus	30.33	2.00e-09	57.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence