iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
microRNA	miRNAMap	RAID2
Protein-protein Interaction
IID	iRefIndex	Mentha
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	40.81	2.00e-151	534.00	IUUC-Hsa-046870

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Caenorhabditis elegans

Functional Description
(View)

May play a role in transcription regulation.

Protein Sequence
(Fasta)

MADTEGTSSS IPTSTNSSRH RASRGRGGRF RQAPRQVGAN TADNLDAAPL MNPRGGHRGG 60
SGNKRGRGQK EATSASRLQM QPEANFTFNP NAATFNPAQS VLFDPSVPPP TIGASTHSNQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACTAAAGTAA TTATGGCCGA TACTGAAGGA ACATCATCTA GTATTCCAAC ATCCACAAAT 60
TCTTCCCGTC ACCGAGCAAG TCGAGGAAGA GGAGGTCGTT TCCGTCAAGC TCCTCGACAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0238--DNA-binding
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR034078--NFX1_fam
IPR001374--R3H_dom
IPR034076--R3H_NF-X1
IPR000967--Znf_NFX1
IPR001841--Znf_RING

PROSITE

PS51061--R3H
PS50089--ZF_RING_2

Pfam

PF01424--R3H
PF01422--zf-NF-X1

SMART

SM00393--R3H
SM00438--ZnF_NFX

Gene Ontology

GO:0005634--C:nucleus
GO:0000977--F:RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001078--F:transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0008270--F:zinc ion binding
GO:0000122--P:negative regulation of transcription from RNA polymerase II promoter
GO:0006366--P:transcription from RNA polymerase II promoter

KEGG

cel:CELE_C16A3.7

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000224	Aegilops tauschii	33.96	9.00e-70	256.00
IUUC-Aml-001716	Ailuropoda melanoleuca	40.81	5.00e-150	524.00
IUUC-Atr-002895	Amborella trichopoda	34.40	2.00e-121	429.00
IUUC-Apl-003650	Anas platyrhynchos	41.02	1.00e-160	559.00
IUUC-Aca-004313	Anolis carolinensis	36.15	3.00e-167	581.00
IUUC-Aly-006515	Arabidopsis lyrata	34.17	7.00e-120	424.00
IUUC-Ath-007056	Arabidopsis thaliana	32.41	6.00e-121	427.00
IUUC-Ago-007777	Ashbya gossypii	30.59	3.00e-81	295.00
IUUC-Acl-008068	Aspergillus clavatus	33.58	2.00e-74	272.00
IUUC-Afl-008499	Aspergillus flavus	36.00	4.00e-48	184.00
IUUC-Afu-009016	Aspergillus fumigatus	33.59	1.00e-107	383.00
IUUC-Ani-009477	Aspergillus nidulans	32.82	4.00e-106	378.00
IUUC-Ang-009605	Aspergillus niger	34.36	2.00e-115	409.00
IUUC-Aor-010166	Aspergillus oryzae	33.82	8.00e-53	201.00
IUUC-Ame-010640	Astyanax mexicanus	40.82	2.00e-161	561.00
IUUC-Bgr-012024	Blumeria graminis	29.29	9.00e-105	374.00
IUUC-Bta-012789	Bos taurus	40.48	2.00e-150	525.00
IUUC-Bci-013768	Botrytis cinerea	29.32	9.00e-106	377.00
IUUC-Bdi-014723	Brachypodium distachyon	34.31	1.00e-105	376.00
IUUC-Bol-015394	Brassica oleracea	33.97	2.00e-122	432.00
IUUC-Bra-017266	Brassica rapa	33.06	9.00e-122	430.00
IUUC-Cja-019769	Callithrix jacchus	37.38	1.00e-140	493.00
IUUC-Cfa-020727	Canis familiaris	41.05	8.00e-149	520.00
IUUC-Cpo-021741	Cavia porcellus	38.36	2.00e-152	532.00
IUUC-Csa-024054	Chlorocebus sabaeus	38.96	3.00e-149	521.00
IUUC-Cho-025031	Choloepus hoffmanni	36.47	4.00e-130	457.00
IUUC-Cin-025164	Ciona intestinalis	38.62	6.00e-154	537.00
IUUC-Csv-026260	Ciona savignyi	40.37	8.00e-158	550.00
IUUC-Cgl-026451	Colletotrichum gloeosporioides	30.49	2.00e-67	249.00
IUUC-Cne-026923	Cryptococcus neoformans	30.89	3.00e-66	245.00
IUUC-Dre-028227	Danio rerio	41.13	2.00e-165	575.00
IUUC-Dno-029830	Dasypus novemcinctus	38.06	2.00e-146	512.00
IUUC-Dor-030436	Dipodomys ordii	34.46	2.00e-97	349.00
IUUC-Dse-031485	Dothistroma septosporum	31.83	2.00e-100	359.00
IUUC-Dme-031875	Drosophila melanogaster	37.79	7.00e-135	473.00
IUUC-Eca-033415	Equus caballus	41.45	2.00e-54	206.00
IUUC-Eeu-034528	Erinaceus europaeus	37.48	2.00e-93	336.00
IUUC-Fca-036238	Felis catus	40.51	3.00e-143	501.00
IUUC-Fal-037124	Ficedula albicollis	41.52	1.00e-168	586.00
IUUC-Fox-038075	Fusarium oxysporum	37.78	5.00e-04	39.30
IUUC-Fso-038310	Fusarium solani	31.31	4.00e-88	318.00
IUUC-Gmo-039506	Gadus morhua	39.68	9.00e-151	526.00
IUUC-Ggr-039984	Gaeumannomyces graminis	32.37	3.00e-110	392.00
IUUC-Gga-040674	Gallus gallus	40.92	8.00e-155	539.00
IUUC-Gac-041416	Gasterosteus aculeatus	39.87	8.00e-148	516.00
IUUC-Gma-043625	Glycine max	34.85	3.00e-115	409.00
IUUC-Ggo-045017	Gorilla gorilla	38.89	2.00e-152	532.00
IUUC-Hsa-046870	Homo sapiens	39.05	1.00e-151	529.00
IUUC-Hvu-047466	Hordeum vulgare	33.40	5.00e-64	238.00
IUUC-Itr-048703	Ictidomys tridecemlineatus	43.04	6.00e-16	77.40
IUUC-Kpa-049244	Komagataella pastoris	27.74	1.00e-74	273.00
IUUC-Lch-050376	Latimeria chalumnae	41.03	2.00e-158	552.00
IUUC-Lpe-050955	Leersia perrieri	32.64	7.00e-84	304.00
IUUC-Loc-051948	Lepisosteus oculatus	36.54	3.00e-173	601.00
IUUC-Lma-052950	Leptosphaeria maculans	32.92	3.00e-102	365.00
IUUC-Laf-054206	Loxodonta africana	42.39	2.00e-81	295.00
IUUC-Mcc-055005	Macaca mulatta	38.96	3.00e-149	521.00
IUUC-Meu-056120	Macropus eugenii	41.78	4.00e-62	231.00
IUUC-Mor-057238	Magnaporthe oryzae	32.04	1.00e-105	377.00
IUUC-Mpo-057574	Magnaporthe poae	31.81	1.00e-110	393.00
IUUC-Mtr-057823	Medicago truncatula	35.86	7.00e-100	357.00
IUUC-Mla-058822	Melampsora laricipopulina	30.54	9.00e-90	323.00
IUUC-Mga-059785	Meleagris gallopavo	42.34	2.00e-85	308.00
IUUC-Mvi-060543	Microbotryum violaceum	30.26	3.00e-102	365.00
IUUC-Mmr-060611	Microcebus murinus	35.73	2.00e-145	509.00
IUUC-Mdo-062719	Monodelphis domestica	37.85	2.00e-151	529.00
IUUC-Mmu-064376	Mus musculus	39.44	1.00e-146	513.00
IUUC-Mac-064834	Musa acuminata	32.23	6.00e-91	327.00
IUUC-Mpu-066298	Mustela putorius furo	40.81	3.00e-150	525.00
IUUC-Mlu-067546	Myotis lucifugus	41.16	5.00e-157	547.00
IUUC-Nfi-068388	Neosartorya fischeri	33.58	5.00e-115	407.00
IUUC-Ncr-068875	Neurospora crassa	32.10	3.00e-103	369.00
IUUC-Nle-069813	Nomascus leucogenys	39.30	7.00e-153	533.00
IUUC-Opr-070995	Ochotona princeps	39.11	2.00e-142	498.00
IUUC-Ont-072084	Oreochromis niloticus	39.06	4.00e-162	564.00
IUUC-Oan-073545	Ornithorhynchus anatinus	36.83	6.00e-132	464.00
IUUC-Ocu-074092	Oryctolagus cuniculus	36.09	2.00e-136	478.00
IUUC-Oba-075828	Oryza barthii	33.33	1.00e-94	340.00
IUUC-Obr-076373	Oryza brachyantha	32.12	1.00e-66	246.00
IUUC-Ogl-077043	Oryza glaberrima	33.51	8.00e-99	353.00
IUUC-Ogu-078647	Oryza glumaepatula	33.33	6.00e-96	344.00
IUUC-Oin-079793	Oryza indica	33.02	4.00e-70	258.00
IUUC-Olo-080815	Oryza longistaminata	32.48	2.00e-95	342.00
IUUC-Ome-081650	Oryza meridionalis	33.77	1.00e-102	366.00
IUUC-Oni-082708	Oryza nivara	33.38	1.00e-100	360.00
IUUC-Opu-084078	Oryza punctata	33.47	2.00e-96	345.00
IUUC-Oru-084549	Oryza rufipogon	33.38	1.00e-100	360.00
IUUC-Osa-086095	Oryza sativa	33.49	4.00e-86	311.00
IUUC-Oga-088453	Otolemur garnettii	34.81	6.00e-143	500.00
IUUC-Oar-089769	Ovis aries	37.78	2.00e-150	525.00
IUUC-Ptr-090803	Pan troglodytes	39.05	1.00e-151	529.00
IUUC-Pan-092169	Papio anubis	38.91	3.00e-151	528.00
IUUC-Psi-094065	Pelodiscus sinensis	41.09	5.00e-166	577.00
IUUC-Pma-094592	Petromyzon marinus	37.25	1.00e-136	479.00
IUUC-Pno-095016	Phaeosphaeria nodorum	36.45	1.00e-16	79.30
IUUC-Ppa-095597	Physcomitrella patens	33.41	3.00e-121	428.00
IUUC-Pfo-096959	Poecilia formosa	37.69	3.00e-158	551.00
IUUC-Pab-097732	Pongo abelii	40.85	1.00e-125	442.00
IUUC-Pop-099062	Populus trichocarpa	33.70	2.00e-111	395.00
IUUC-Pca-100219	Procavia capensis	36.05	2.00e-99	356.00
IUUC-Ppe-101695	Prunus persica	34.67	5.00e-107	381.00
IUUC-Pva-102402	Pteropus vampyrus	38.34	3.00e-123	435.00
IUUC-Pgr-103317	Puccinia graminis	29.76	1.00e-97	350.00
IUUC-Ptt-103771	Puccinia triticina	29.28	2.00e-91	330.00
IUUC-Pte-104189	Pyrenophora teres	30.77	7.00e-08	51.20
IUUC-Pyt-104801	Pyrenophora triticirepentis	33.46	1.00e-102	367.00
IUUC-Rno-105721	Rattus norvegicus	39.34	5.00e-154	537.00
IUUC-Sce-106350	Saccharomyces cerevisiae	28.64	1.00e-84	306.00
IUUC-Sha-106801	Sarcophilus harrisii	39.51	8.00e-157	546.00
IUUC-Sja-107692	Schizosaccharomyces japonicus	34.43	3.00e-119	421.00
IUUC-Spo-108253	Schizosaccharomyces pombe	34.43	3.00e-111	395.00
IUUC-Ssl-108587	Sclerotinia sclerotiorum	33.55	8.00e-66	243.00
IUUC-Smo-108865	Selaginella moellendorffii	35.77	1.00e-107	383.00
IUUC-Sit-110153	Setaria italica	33.68	2.00e-102	365.00
IUUC-Sly-111638	Solanum lycopersicum	31.82	1.00e-102	367.00
IUUC-Stu-112099	Solanum tuberosum	32.37	3.00e-104	372.00
IUUC-Sar-113030	Sorex araneus	37.57	1.00e-57	217.00
IUUC-Sbi-113944	Sorghum bicolor	33.55	1.00e-103	369.00
IUUC-Sre-115206	Sporisorium reilianum	32.65	4.00e-114	405.00
IUUC-Ssc-115729	Sus scrofa	42.68	7.00e-17	80.50
IUUC-Tgu-117520	Taeniopygia guttata	43.71	1.00e-114	405.00
IUUC-Tru-118487	Takifugu rubripes	40.76	3.00e-154	538.00
IUUC-Tsy-119363	Tarsius syrichta	34.19	3.00e-102	365.00
IUUC-Tca-121813	Theobroma cacao	33.53	3.00e-107	382.00
IUUC-Tre-122248	Trichoderma reesei	30.21	5.00e-90	324.00
IUUC-Tvi-122462	Trichoderma virens	31.51	1.00e-94	339.00
IUUC-Tae-123637	Triticum aestivum	33.12	2.00e-94	340.00
IUUC-Tur-126173	Triticum urartu	34.47	1.00e-91	330.00
IUUC-Tme-127213	Tuber melanosporum	30.40	4.00e-86	311.00
IUUC-Tbe-127399	Tupaia belangeri	39.70	1.00e-93	336.00
IUUC-Ttr-128798	Tursiops truncatus	39.91	2.00e-90	326.00
IUUC-Uma-129421	Ustilago maydis	33.17	3.00e-116	412.00
IUUC-Vda-129863	Verticillium dahliae	30.66	6.00e-95	341.00
IUUC-Vvi-131615	Vitis vinifera	34.55	1.00e-122	433.00
IUUC-Xtr-132309	Xenopus tropicalis	39.23	3.00e-153	535.00
IUUC-Xma-133235	Xiphophorus maculatus	37.61	2.00e-151	528.00
IUUC-Yli-134536	Yarrowia lipolytica	32.00	5.00e-96	344.00
IUUC-Zma-135358	Zea mays	32.89	5.00e-98	351.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence