iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099612

Ensembl Protein ID

POPTR_0004s09400.1

UniProt Accession

B9H339; B9H339_POPTR

Genbank Protein ID

EEE86352.1

Protein Name

Transducin family protein

Genbank Nucleotide ID

CM000340

Gene Name

POPTRDRAFT_831139; POPTR_0004s09400g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0004s09400	POPTR_0004s09400.1	POPTR_0004s09400.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.20e-19	69.0	93	127

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtcl.afsdtllvsGsdDgtikvWDlrtgvl 35
           H+d +++l ++++ ++++G d g ikvWD+r+  +
   Q: 93   HEDAIFSLiNLTESTIATGDDQGCIKVWDTRQRSC 127
           9******72565568**************998766 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MEIDLGKVPF TMDFHPSDNL VTAGLITGDL HLYRFNADSS PQRLLEIHAH SEACRAARFI 60
NDGQAIITGS SDRSILATDL ETGSPIARLE NAHEDAIFSL INLTESTIAT GDDQGCIKVW 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAAATCATT GACGCAAAAT TGACGATTTT TAGCAAGATC AAACTCTCTC TCTCTCTCTC 60
TCTCTCTCCT GTAATGATTT TTTCTTCTTT TTTTTCCCAG CATAAAATCA TCAACGACCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR017422--WDR55

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0042273--P:ribosomal large subunit biogenesis
GO:0006364--P:rRNA processing

KEGG

pop:POPTR_0004s09400g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000562	Aegilops tauschii	54.65	1.00e-103	369.00
IUUC-Aml-001768	Ailuropoda melanoleuca	38.87	5.00e-56	212.00
IUUC-Atr-002764	Amborella trichopoda	58.06	7.00e-54	202.00
IUUC-Apl-003880	Anas platyrhynchos	36.82	6.00e-46	179.00
IUUC-Aca-005060	Anolis carolinensis	35.92	1.00e-58	221.00
IUUC-Aly-006484	Arabidopsis lyrata	64.77	2.00e-114	405.00
IUUC-Ath-006652	Arabidopsis thaliana	71.20	6.00e-134	469.00
IUUC-Bta-013497	Bos taurus	39.30	1.00e-57	216.00
IUUC-Bdi-014378	Brachypodium distachyon	59.11	1.00e-114	405.00
IUUC-Bol-016352	Brassica oleracea	64.00	8.00e-135	472.00
IUUC-Bra-017819	Brassica rapa	66.67	1.00e-136	478.00
IUUC-Cja-018792	Callithrix jacchus	36.39	3.00e-57	214.00
IUUC-Cfa-020739	Canis familiaris	38.16	5.00e-56	212.00
IUUC-Cpo-022331	Cavia porcellus	35.50	4.00e-57	214.00
IUUC-Cre-022921	Chlamydomonas reinhardtii	44.44	1.00e-45	175.00
IUUC-Csa-023414	Chlorocebus sabaeus	35.71	1.00e-56	213.00
IUUC-Cho-024600	Choloepus hoffmanni	37.89	7.00e-53	200.00
IUUC-Cin-025565	Ciona intestinalis	34.19	4.00e-49	187.00
IUUC-Csv-026294	Ciona savignyi	35.07	1.00e-47	183.00
IUUC-Cne-026979	Cryptococcus neoformans	36.05	3.00e-46	178.00
IUUC-Dre-028492	Danio rerio	35.88	3.00e-52	198.00
IUUC-Dno-030050	Dasypus novemcinctus	37.41	2.00e-50	193.00
IUUC-Dor-030386	Dipodomys ordii	31.62	2.00e-40	159.00
IUUC-Dme-032012	Drosophila melanogaster	32.86	1.00e-41	164.00
IUUC-Ete-032491	Echinops telfairi	37.80	3.00e-56	211.00
IUUC-Eca-033583	Equus caballus	39.58	3.00e-58	219.00
IUUC-Eeu-034976	Erinaceus europaeus	40.65	1.00e-51	196.00
IUUC-Fca-036417	Felis catus	38.95	2.00e-57	216.00
IUUC-Gmo-039505	Gadus morhua	35.88	8.00e-56	210.00
IUUC-Gga-040732	Gallus gallus	34.32	2.00e-53	202.00
IUUC-Gac-041313	Gasterosteus aculeatus	36.21	2.00e-56	212.00
IUUC-Ggo-044748	Gorilla gorilla	36.61	2.00e-57	216.00
IUUC-Hsa-046943	Homo sapiens	36.31	7.00e-57	213.00
IUUC-Hvu-047659	Hordeum vulgare	56.36	7.00e-112	396.00
IUUC-Itr-048110	Ictidomys tridecemlineatus	35.21	3.00e-57	214.00
IUUC-Lch-050331	Latimeria chalumnae	34.69	3.00e-44	171.00
IUUC-Lpe-051193	Leersia perrieri	65.35	9.00e-121	426.00
IUUC-Loc-051946	Lepisosteus oculatus	37.98	5.00e-58	218.00
IUUC-Laf-054035	Loxodonta africana	36.39	7.00e-59	220.00
IUUC-Mcc-055285	Macaca mulatta	36.93	2.00e-26	111.00
IUUC-Meu-056596	Macropus eugenii	36.14	2.00e-53	202.00
IUUC-Mtr-058587	Medicago truncatula	69.64	3.00e-145	507.00
IUUC-Mga-059839	Meleagris gallopavo	35.47	7.00e-40	158.00
IUUC-Mdo-062868	Monodelphis domestica	37.81	2.00e-54	207.00
IUUC-Mmu-064305	Mus musculus	37.89	6.00e-56	210.00
IUUC-Mac-065041	Musa acuminata	69.89	3.00e-147	514.00
IUUC-Mpu-066779	Mustela putorius furo	38.87	1.00e-56	213.00
IUUC-Mlu-067223	Myotis lucifugus	39.22	2.00e-55	210.00
IUUC-Nle-069852	Nomascus leucogenys	36.09	3.00e-56	211.00
IUUC-Ont-072452	Oreochromis niloticus	36.42	1.00e-58	219.00
IUUC-Ocu-074628	Oryctolagus cuniculus	38.95	6.00e-57	214.00
IUUC-Oba-075868	Oryza barthii	64.86	2.00e-117	415.00
IUUC-Obr-076768	Oryza brachyantha	60.73	3.00e-124	437.00
IUUC-Ogl-077424	Oryza glaberrima	65.88	4.00e-121	427.00
IUUC-Ogu-078847	Oryza glumaepatula	65.20	6.00e-118	416.00
IUUC-Oin-079495	Oryza indica	65.88	4.00e-121	427.00
IUUC-Olo-080268	Oryza longistaminata	65.54	2.00e-118	417.00
IUUC-Ome-081709	Oryza meridionalis	64.68	2.00e-105	375.00
IUUC-Oni-082749	Oryza nivara	65.88	4.00e-121	427.00
IUUC-Opu-084023	Oryza punctata	55.74	1.00e-93	335.00
IUUC-Oru-084764	Oryza rufipogon	65.20	6.00e-118	416.00
IUUC-Osa-086009	Oryza sativa	65.88	2.00e-121	427.00
IUUC-Ola-086463	Oryzias latipes	35.18	3.00e-51	195.00
IUUC-Olu-087897	Ostreococcus lucimarinus	41.40	2.00e-60	225.00
IUUC-Oga-089114	Otolemur garnettii	38.83	6.00e-59	220.00
IUUC-Ptr-090556	Pan troglodytes	36.31	3.00e-57	214.00
IUUC-Pan-092828	Papio anubis	35.71	1.00e-56	213.00
IUUC-Pma-094413	Petromyzon marinus	36.26	2.00e-53	202.00
IUUC-Ppa-095422	Physcomitrella patens	57.09	3.00e-103	367.00
IUUC-Pfo-096389	Poecilia formosa	36.21	5.00e-57	214.00
IUUC-Pab-098095	Pongo abelii	36.31	9.00e-58	216.00
IUUC-Pca-100408	Procavia capensis	34.02	3.00e-53	201.00
IUUC-Ppe-101931	Prunus persica	73.22	1.00e-142	498.00
IUUC-Pva-102549	Pteropus vampyrus	39.30	9.00e-58	216.00
IUUC-Rno-105079	Rattus norvegicus	38.52	2.00e-56	213.00
IUUC-Sha-107299	Sarcophilus harrisii	39.58	3.00e-52	199.00
IUUC-Smo-109673	Selaginella moellendorffii	49.58	4.00e-87	314.00
IUUC-Sit-110621	Setaria italica	57.94	2.00e-121	428.00
IUUC-Sly-110988	Solanum lycopersicum	75.73	2.00e-136	478.00
IUUC-Stu-112713	Solanum tuberosum	76.38	2.00e-137	481.00
IUUC-Sbi-114617	Sorghum bicolor	63.25	4.00e-119	420.00
IUUC-Sre-115136	Sporisorium reilianum	35.53	3.00e-15	75.90
IUUC-Ssc-116268	Sus scrofa	38.52	9.00e-57	214.00
IUUC-Tgu-116720	Taeniopygia guttata	34.48	2.00e-31	130.00
IUUC-Tru-117977	Takifugu rubripes	40.08	5.00e-54	204.00
IUUC-Tsy-119121	Tarsius syrichta	41.36	6.00e-33	134.00
IUUC-Tni-119904	Tetraodon nigroviridis	36.21	3.00e-56	211.00
IUUC-Tca-121718	Theobroma cacao	73.58	7.00e-148	516.00
IUUC-Tae-124219	Triticum aestivum	61.89	3.00e-113	401.00
IUUC-Tme-126922	Tuber melanosporum	23.84	1.00e-15	77.80
IUUC-Tbe-127276	Tupaia belangeri	41.46	3.00e-52	197.00
IUUC-Uma-129505	Ustilago maydis	37.80	1.00e-16	80.90
IUUC-Vpa-130276	Vicugna pacos	37.56	8.00e-38	149.00
IUUC-Vvi-131377	Vitis vinifera	75.07	9.00e-153	534.00
IUUC-Xtr-132529	Xenopus tropicalis	39.51	1.00e-60	227.00
IUUC-Xma-134177	Xiphophorus maculatus	36.21	2.00e-53	202.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence