iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Bta-012738

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Ubiquitinyl hydrolase 1

Genbank Nucleotide ID

DAAA02028746

Gene Name

USP3

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSBTAG00000008805.4	ENSBTAT00000011598.4	ENSBTAP00000011598.4

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	2.10e-100	336.4	160	511
UBD/ZnF/ZnF_UBP	3.90e-27	94.4	27	105

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 1    tGlkNlgNtCYmNSvLQcLsnipelrellle...........kkkeklneenpkepkgellkslqklfeelwkskkkavsprellkalk 78
           tGl+NlgNtC+mN++LQ+Lsni+++ ++++e             +++ + +++ e++ +l+++++k + +lw+++++a+sp++l+ +++
   Q: 160  TGLRNLGNTCFMNAILQSLSNIEQFCCYFKElpavelrngktAGRRTYHTRSQGENNVSLVEEFRKTLCALWQGSQTAFSPESLFYVVW 248
           7******************************888888777775555555555688889******************************* PP
   S: 79   keaeefsgyeqqDaqEflaflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqikclecdnvssree 167
           k+ ++f+gy+qqDa+Ef+++lld+l+ el+   n    ++  +++s+l + +++   +  +++++ +F+g l++++ cl c+++s +++
   Q: 249  KIMPNFRGYQQQDAHEFMRYLLDHLHLELQGGFNGISRSSILQENSTL-SASNKCCINGASTVVTAIFGGILQNEVNCLICGTESRKFD 336
           *****************************7744444444433333333.345688899999**************************** PP
   S: 168  pfldlslpvpgkeetkke.........slqdcLesftkeeelegenkyycekckkkqeaekklklkklPevLilhLkRfsfseeqksre 247
           pfldlsl++p++  +k +         sl+dcL+sft  eel++ + y c kckkkq+++kk++++klP+vL+lhLkRf+++   + r+
   Q: 337  PFLDLSLDIPSQFRNKRSknqengptcSLRDCLRSFTDLEELDETELYMCHKCKKKQKSTKKFWIQKLPKVLCLHLKRFHWTA--YLRN 423
           **********66655444667899999****************************************************7755..799* PP
   S: 248  kinkkvefple.LdlspfctspeekqkekkkYeLiavvvHsG.slssGHYvayvknekgkWllfdDskVtevkeeevleetgstaYvlf 334
           k++++vefpl+ Ld++ ++ +pe++  e++ Y+L avvvH+G +++sGHY+ay+ + +g+W++f+Ds+Vt ++e++vl+   ++aY+lf
   Q: 424  KVDTYVEFPLRgLDMKCYLLEPENSGPENCLYDLAAVVVHHGsGVGSGHYTAYATH-EGRWFHFNDSTVTLTDEDTVLK---AKAYILF 508
           ********************************************************.9*********************...******* PP
   S: 335  Ykr 337
           Y +
   Q: 509  YVE 511
           *76 PP

UBD/ZnF/ZnF_UBP

   S: 1    kkcsv.cdktenlWlcLtcgsvgCGRyvegHalkHyeetqhpl................vlslstlsvycYacddyvhr 62
           ++cs  c++++++W+cLtc+sv+CGRyv+gHa+kHye++q pl                ++++s++s+ycY+cdd+v++
   Q: 27   WCCSAvCRSNKSPWVCLTCSSVHCGRYVNGHAKKHYEDAQIPLtnhkksekqekaqhtvCMDCSSYSTYCYRCDDFVVN 105
           899877***********************************************************************85 PP

Organism

Bos taurus

Protein Sequence
(Fasta)

MECPHLSSSV CIAPDSAKFP NGSPSSWCCS AVCRSNKSPW VCLTCSSVHC GRYVNGHAKK 60
HYEDAQIPLT NHKKSEKQEK AQHTVCMDCS SYSTYCYRCD DFVVNDTKLG LVQKVREHLQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGGACGCAGC CGCCGTCGGC CGAGCGTCGG GCGAGGAGCG ACCCCAGACG GAGTCGTCGG 60
AGTTCCTCCG CCCCCGCCTC GCCGGGTCCC GGAGCCTCAG TCCTCGCAGC TCTTCTGGTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0378--Hydrolase
KW-0479--Metal-binding
KW-0645--Protease
KW-1185--Reference proteome
KW-0788--Thiol protease
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001394--Peptidase_C19_UCH
IPR018200--USP_CS
IPR028889--USP_dom
IPR013083--Znf_RING/FYVE/PHD
IPR001607--Znf_UBP

PROSITE

PS00972--USP_1
PS00973--USP_2
PS50235--USP_3
PS50271--ZF_UBP

Pfam

PF00443--UCH
PF02148--zf-UBP

SMART

SM00290--ZnF_UBP

Gene Ontology

GO:0070938--C:contractile ring
GO:0000790--C:nuclear chromatin
GO:0005654--C:nucleoplasm
GO:0005634--C:nucleus
GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0008270--F:zinc ion binding
GO:0006281--P:DNA repair
GO:0016578--P:histone deubiquitination
GO:0000278--P:mitotic cell cycle
GO:0031647--P:regulation of protein stability
GO:0006511--P:ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001537	Ailuropoda melanoleuca	97.31	0.00e+00	951.00
IUUC-Apl-003358	Anas platyrhynchos	95.52	0.00e+00	899.00
IUUC-Aca-004454	Anolis carolinensis	92.01	0.00e+00	825.00
IUUC-Ame-011544	Astyanax mexicanus	76.83	0.00e+00	737.00
IUUC-Cel-018186	Caenorhabditis elegans	37.08	3.00e-55	209.00
IUUC-Cja-018893	Callithrix jacchus	96.93	0.00e+00	943.00
IUUC-Cfa-020607	Canis familiaris	97.89	0.00e+00	937.00
IUUC-Cpo-021828	Cavia porcellus	95.20	0.00e+00	911.00
IUUC-Csa-023884	Chlorocebus sabaeus	97.88	0.00e+00	775.00
IUUC-Cho-024863	Choloepus hoffmanni	87.72	0.00e+00	811.00
IUUC-Dre-028452	Danio rerio	74.10	0.00e+00	746.00
IUUC-Dno-029531	Dasypus novemcinctus	96.73	0.00e+00	869.00
IUUC-Dor-030913	Dipodomys ordii	88.92	8.00e-177	613.00
IUUC-Ete-032611	Echinops telfairi	90.98	0.00e+00	874.00
IUUC-Eca-033622	Equus caballus	98.37	0.00e+00	879.00
IUUC-Eeu-035268	Erinaceus europaeus	92.64	0.00e+00	802.00
IUUC-Fca-035801	Felis catus	97.14	0.00e+00	905.00
IUUC-Fal-036749	Ficedula albicollis	94.70	0.00e+00	852.00
IUUC-Gmo-039598	Gadus morhua	76.76	0.00e+00	766.00
IUUC-Gga-040883	Gallus gallus	95.72	0.00e+00	865.00
IUUC-Gac-042235	Gasterosteus aculeatus	76.82	0.00e+00	744.00
IUUC-Ggo-044767	Gorilla gorilla	91.65	0.00e+00	835.00
IUUC-Hsa-046581	Homo sapiens	97.12	0.00e+00	966.00
IUUC-Itr-047898	Ictidomys tridecemlineatus	97.89	0.00e+00	937.00
IUUC-Lch-049732	Latimeria chalumnae	90.60	0.00e+00	911.00
IUUC-Loc-052371	Lepisosteus oculatus	88.87	0.00e+00	898.00
IUUC-Laf-054565	Loxodonta africana	97.70	0.00e+00	935.00
IUUC-Mcc-055522	Macaca mulatta	97.50	0.00e+00	971.00
IUUC-Meu-056754	Macropus eugenii	86.34	6.00e-176	610.00
IUUC-Mga-060095	Meleagris gallopavo	94.96	0.00e+00	639.00
IUUC-Mmr-060839	Microcebus murinus	97.70	0.00e+00	934.00
IUUC-Mdo-062339	Monodelphis domestica	97.01	0.00e+00	756.00
IUUC-Mmu-063638	Mus musculus	96.16	0.00e+00	902.00
IUUC-Mpu-066647	Mustela putorius furo	98.16	0.00e+00	763.00
IUUC-Mlu-067921	Myotis lucifugus	96.73	0.00e+00	893.00
IUUC-Nle-069752	Nomascus leucogenys	97.89	0.00e+00	972.00
IUUC-Opr-070636	Ochotona princeps	82.73	0.00e+00	726.00
IUUC-Ont-071638	Oreochromis niloticus	77.05	0.00e+00	702.00
IUUC-Oan-073417	Ornithorhynchus anatinus	90.21	0.00e+00	886.00
IUUC-Ocu-074620	Oryctolagus cuniculus	95.97	0.00e+00	920.00
IUUC-Ola-087281	Oryzias latipes	79.03	0.00e+00	630.00
IUUC-Olu-087697	Ostreococcus lucimarinus	40.00	6.00e-49	187.00
IUUC-Oga-088448	Otolemur garnettii	96.74	0.00e+00	959.00
IUUC-Oar-090132	Ovis aries	98.66	0.00e+00	943.00
IUUC-Ptr-090696	Pan troglodytes	97.56	0.00e+00	910.00
IUUC-Pan-092124	Papio anubis	97.12	0.00e+00	966.00
IUUC-Psi-093801	Pelodiscus sinensis	96.09	0.00e+00	748.00
IUUC-Pma-094472	Petromyzon marinus	72.81	1.00e-94	338.00
IUUC-Pfo-096330	Poecilia formosa	78.35	0.00e+00	776.00
IUUC-Pab-098191	Pongo abelii	97.70	0.00e+00	971.00
IUUC-Pca-100341	Procavia capensis	95.61	0.00e+00	719.00
IUUC-Pva-103177	Pteropus vampyrus	97.31	0.00e+00	922.00
IUUC-Rno-105048	Rattus norvegicus	94.84	0.00e+00	885.00
IUUC-Sha-107429	Sarcophilus harrisii	95.78	0.00e+00	869.00
IUUC-Sar-113024	Sorex araneus	96.16	0.00e+00	819.00
IUUC-Ssc-115749	Sus scrofa	97.15	6.00e-152	529.00
IUUC-Tgu-117277	Taeniopygia guttata	94.69	0.00e+00	885.00
IUUC-Tru-117844	Takifugu rubripes	78.54	0.00e+00	775.00
IUUC-Tsy-119456	Tarsius syrichta	94.89	0.00e+00	865.00
IUUC-Tni-120251	Tetraodon nigroviridis	74.95	0.00e+00	791.00
IUUC-Tbe-127423	Tupaia belangeri	91.36	0.00e+00	849.00
IUUC-Ttr-128401	Tursiops truncatus	92.23	0.00e+00	800.00
IUUC-Vpa-130549	Vicugna pacos	88.02	1.00e-163	568.00
IUUC-Xtr-131892	Xenopus tropicalis	82.83	0.00e+00	794.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence