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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Cel-018253
Ensembl Protein ID M03C11.8
UniProt Accession G5EDG2; SMRCD_CAEEL
Genbank Protein ID CAA88960.2; CAA88960.2
Protein Name SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 homolog
Genbank Nucleotide ID Z49128; AL021171
Gene Name M03C11.8
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
WBGene00010845 M03C11.8 M03C11.8
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
microRNAmiRNAMapRAID2
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
UBD/Alpha-Helix/CUE 43.27 5.00e-115 410.00 IUUC-Sce-106399
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Caenorhabditis elegans
Functional Description
(View)

Functional Description


     DNA helicase that possesses intrinsic ATP-dependent nucleosome-remodeling activity and is both required for DNA repair and heterochromatin organization. Promotes DNA end resection of double-strand breaks (DSBs) following DNA damage: probably acts by weakening histone DNA interactions in nucleosomes flanking DSBs (By similarity).
 DNA helicase that possesses intrinsic ATP-dependent nucleosome-remodeling activity and is both required for DNA repair and heterochromatin organization. Promotes DNA end resection of double-strand breaks (DSBs) following DNA damage: probably acts by weakening histone DNA interactions in nucleosomes flanking DSBs (By similarity).
Protein Sequence
(Fasta)
MSTTSDFQTG ERVRVAHQGN PQSSSLQADM DAKKALLSQN LNNGHLTARP PRTTGPGIKY 60
GEKKPKKQKG SDDDDEDYVD ETMPSEDEED FDNNEEDEDD DDYEEEGPRK RKAPSKKKLV 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Cel-018253|UBD,CUE|Caenorhabditis elegans
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGTCAACGA CGAGCGATTT TCAAACCGGA GAACGGGTGC GTGTTGCACA TCAAGGCAAC 60
CCACAATCCT CTAGCTTACA AGCCGATATG GACGCCAAAA AGGCGCTTTT GTCTCAAAAT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Cel-018253|UBD,CUE|Caenorhabditis elegans
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0067--ATP-binding
KW-0156--Chromatin regulator
KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0238--DNA-binding
KW-0347--Helicase
KW-0378--Hydrolase
KW-0547--Nucleotide-binding
KW-0539--Nucleus
KW-1185--Reference proteome
Interpro

IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
PROSITE

PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
Pfam

PF00271--Helicase_C
PF00176--SNF2_N
SMART

SM00487--DEXDc
SM00490--HELICc
Gene Ontology

GO:0005634--C:nucleus
GO:0005524--F:ATP binding
GO:0003677--F:DNA binding
GO:0004386--F:helicase activity
GO:0016569--P:covalent chromatin modification
GO:0006281--P:DNA repair
KEGG cel:CELE_M03C11.8
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000567 Aegilops tauschii 38.52 1.00e-96 346.00
IUUC-Aml-002063 Ailuropoda melanoleuca 42.88 1.00e-144 506.00
IUUC-Atr-003078 Amborella trichopoda 39.78 1.00e-101 362.00
IUUC-Apl-003860 Anas platyrhynchos 43.11 8.00e-151 526.00
IUUC-Aca-004485 Anolis carolinensis 43.06 3.00e-146 511.00
IUUC-Aly-006561 Arabidopsis lyrata 37.73 2.00e-102 365.00
IUUC-Ath-006832 Arabidopsis thaliana 39.59 2.00e-101 362.00
IUUC-Ago-007758 Ashbya gossypii 44.05 2.00e-128 452.00
IUUC-Acl-008226 Aspergillus clavatus 42.09 2.00e-122 432.00
IUUC-Afl-008556 Aspergillus flavus 42.26 5.00e-118 417.00
IUUC-Afu-008799 Aspergillus fumigatus 42.40 4.00e-123 434.00
IUUC-Ani-009127 Aspergillus nidulans 42.46 9.00e-121 427.00
IUUC-Ang-009676 Aspergillus niger 41.53 8.00e-121 427.00
IUUC-Aor-010184 Aspergillus oryzae 42.18 4.00e-118 417.00
IUUC-Ate-010559 Aspergillus terreus 42.83 4.00e-123 434.00
IUUC-Ame-011933 Astyanax mexicanus 40.37 8.00e-137 479.00
IUUC-Bta-012963 Bos taurus 43.68 2.00e-144 505.00
IUUC-Bci-013670 Botrytis cinerea 38.45 1.00e-113 403.00
IUUC-Bdi-014286 Brachypodium distachyon 38.78 1.00e-99 356.00
IUUC-Bol-016519 Brassica oleracea 39.78 4.00e-102 364.00
IUUC-Bra-017239 Brassica rapa 39.78 6.00e-102 363.00
IUUC-Cja-019465 Callithrix jacchus 43.95 2.00e-144 505.00
IUUC-Cfa-020637 Canis familiaris 44.21 6.00e-145 507.00
IUUC-Cpo-021822 Cavia porcellus 44.21 9.00e-145 506.00
IUUC-Csa-023315 Chlorocebus sabaeus 43.72 2.00e-142 498.00
IUUC-Cin-025444 Ciona intestinalis 42.62 6.00e-137 479.00
IUUC-Cgl-026383 Colletotrichum gloeosporioides 31.82 2.00e-91 329.00
IUUC-Cne-027090 Cryptococcus neoformans 41.65 2.00e-105 375.00
IUUC-Dre-028385 Danio rerio 40.97 2.00e-135 475.00
IUUC-Dno-028932 Dasypus novemcinctus 42.72 3.00e-144 504.00
IUUC-Dse-031394 Dothistroma septosporum 39.92 1.00e-97 350.00
IUUC-Dme-031640 Drosophila melanogaster 42.40 2.00e-138 485.00
IUUC-Eca-033276 Equus caballus 42.75 2.00e-144 505.00
IUUC-Fca-035936 Felis catus 42.10 1.00e-140 493.00
IUUC-Fal-037636 Ficedula albicollis 42.79 9.00e-150 523.00
IUUC-Fso-038229 Fusarium solani 35.25 3.00e-102 365.00
IUUC-Gmo-039654 Gadus morhua 41.03 1.00e-122 432.00
IUUC-Ggr-039922 Gaeumannomyces graminis 36.18 2.00e-87 316.00
IUUC-Gga-040646 Gallus gallus 42.63 3.00e-151 528.00
IUUC-Gac-042320 Gasterosteus aculeatus 41.60 1.00e-125 442.00
IUUC-Gma-042832 Glycine max 39.40 6.00e-100 357.00
IUUC-Ggo-044875 Gorilla gorilla 39.55 1.00e-121 429.00
IUUC-Hsa-046992 Homo sapiens 43.65 1.00e-143 503.00
IUUC-Hvu-047408 Hordeum vulgare 37.08 6.00e-97 347.00
IUUC-Itr-047881 Ictidomys tridecemlineatus 46.40 2.00e-137 481.00
IUUC-Kpa-049212 Komagataella pastoris 42.64 4.00e-121 428.00
IUUC-Lpe-050987 Leersia perrieri 38.78 3.00e-100 358.00
IUUC-Loc-052272 Lepisosteus oculatus 42.47 7.00e-142 496.00
IUUC-Lma-053118 Leptosphaeria maculans 40.07 2.00e-111 396.00
IUUC-Laf-053436 Loxodonta africana 41.78 2.00e-137 482.00
IUUC-Mcc-055209 Macaca mulatta 43.72 9.00e-143 499.00
IUUC-Mor-056994 Magnaporthe oryzae 33.77 2.00e-88 319.00
IUUC-Mpo-057305 Magnaporthe poae 35.87 8.00e-90 324.00
IUUC-Mtr-058432 Medicago truncatula 39.05 5.00e-99 354.00
IUUC-Mla-058972 Melampsora laricipopulina 40.64 1.00e-114 405.00
IUUC-Mga-059572 Meleagris gallopavo 42.69 9.00e-145 506.00
IUUC-Mvi-060209 Microbotryum violaceum 37.87 9.00e-128 450.00
IUUC-Mmr-061416 Microcebus murinus 42.20 2.00e-127 447.00
IUUC-Mdo-062869 Monodelphis domestica 44.01 1.00e-150 526.00
IUUC-Mmu-064272 Mus musculus 44.18 4.00e-139 487.00
IUUC-Mac-064963 Musa acuminata 38.61 7.00e-94 337.00
IUUC-Mpu-065755 Mustela putorius furo 43.04 3.00e-145 508.00
IUUC-Mlu-067604 Myotis lucifugus 42.28 4.00e-148 517.00
IUUC-Nfi-068310 Neosartorya fischeri 42.45 1.00e-122 433.00
IUUC-Ncr-068841 Neurospora crassa 34.63 2.00e-98 352.00
IUUC-Nle-069227 Nomascus leucogenys 43.65 1.00e-143 503.00
IUUC-Opr-071088 Ochotona princeps 38.22 1.00e-123 436.00
IUUC-Ont-072291 Oreochromis niloticus 41.86 2.00e-128 452.00
IUUC-Oan-073460 Ornithorhynchus anatinus 43.72 6.00e-147 513.00
IUUC-Ocu-074811 Oryctolagus cuniculus 43.04 5.00e-144 504.00
IUUC-Oba-075463 Oryza barthii 38.85 2.00e-100 358.00
IUUC-Obr-076342 Oryza brachyantha 38.64 5.00e-102 364.00
IUUC-Ogu-078837 Oryza glumaepatula 38.85 7.00e-101 360.00
IUUC-Oin-079623 Oryza indica 38.85 4.00e-101 361.00
IUUC-Ome-081105 Oryza meridionalis 38.85 3.00e-101 362.00
IUUC-Oni-082598 Oryza nivara 38.85 1.00e-100 360.00
IUUC-Opu-084040 Oryza punctata 38.85 3.00e-101 362.00
IUUC-Oru-084219 Oryza rufipogon 38.85 4.00e-101 361.00
IUUC-Osa-085461 Oryza sativa 38.85 5.00e-101 361.00
IUUC-Ola-087307 Oryzias latipes 42.39 3.00e-128 451.00
IUUC-Olu-087812 Ostreococcus lucimarinus 36.17 8.00e-90 323.00
IUUC-Oga-089064 Otolemur garnettii 44.37 4.00e-144 504.00
IUUC-Oar-090054 Ovis aries 42.77 2.00e-144 505.00
IUUC-Ptr-091228 Pan troglodytes 43.79 7.00e-144 503.00
IUUC-Pan-092769 Papio anubis 43.25 4.00e-127 447.00
IUUC-Psi-093202 Pelodiscus sinensis 43.43 1.00e-147 515.00
IUUC-Pma-094725 Petromyzon marinus 39.67 2.00e-148 518.00
IUUC-Pno-095130 Phaeosphaeria nodorum 40.38 9.00e-105 373.00
IUUC-Ppa-095559 Physcomitrella patens 40.18 9.00e-106 376.00
IUUC-Pfo-096546 Poecilia formosa 41.50 4.00e-134 471.00
IUUC-Pab-097698 Pongo abelii 43.58 4.00e-141 494.00
IUUC-Pop-099986 Populus trichocarpa 39.96 8.00e-99 353.00
IUUC-Ppe-101649 Prunus persica 39.78 4.00e-98 351.00
IUUC-Pva-102138 Pteropus vampyrus 42.50 1.00e-139 489.00
IUUC-Pgr-103272 Puccinia graminis 37.93 1.00e-106 380.00
IUUC-Ptt-103880 Puccinia triticina 33.24 2.00e-113 402.00
IUUC-Pte-104260 Pyrenophora teres 40.08 2.00e-106 379.00
IUUC-Pyt-104532 Pyrenophora triticirepentis 35.10 3.00e-80 292.00
IUUC-Rno-105903 Rattus norvegicus 42.90 2.00e-139 489.00
IUUC-Sce-106399 Saccharomyces cerevisiae 42.83 3.00e-121 428.00
IUUC-Sha-106783 Sarcophilus harrisii 44.17 1.00e-145 509.00
IUUC-Sja-107887 Schizosaccharomyces japonicus 42.40 1.00e-122 433.00
IUUC-Spo-108154 Schizosaccharomyces pombe 42.46 4.00e-120 425.00
IUUC-Smo-108759 Selaginella moellendorffii 39.55 5.00e-102 363.00
IUUC-Sit-110023 Setaria italica 38.40 5.00e-101 360.00
IUUC-Sly-111423 Solanum lycopersicum 39.18 6.00e-100 357.00
IUUC-Sbi-114688 Sorghum bicolor 37.52 2.00e-98 352.00
IUUC-Sre-114983 Sporisorium reilianum 39.79 2.00e-104 372.00
IUUC-Ssc-116030 Sus scrofa 42.88 8.00e-145 506.00
IUUC-Tgu-117451 Taeniopygia guttata 43.43 2.00e-147 514.00
IUUC-Tru-118600 Takifugu rubripes 41.29 8.00e-122 430.00
IUUC-Tsy-119130 Tarsius syrichta 46.73 1.00e-77 283.00
IUUC-Tni-119758 Tetraodon nigroviridis 42.17 3.00e-128 451.00
IUUC-Tca-121797 Theobroma cacao 39.85 1.00e-99 355.00
IUUC-Tre-121883 Trichoderma reesei 37.22 1.00e-96 347.00
IUUC-Tvi-122333 Trichoderma virens 37.02 2.00e-104 372.00
IUUC-Tae-122848 Triticum aestivum 38.52 9.00e-97 347.00
IUUC-Tur-126594 Triticum urartu 38.26 3.00e-96 344.00
IUUC-Tme-127106 Tuber melanosporum 42.64 4.00e-122 431.00
IUUC-Tbe-127911 Tupaia belangeri 46.93 6.00e-130 457.00
IUUC-Ttr-128597 Tursiops truncatus 42.50 2.00e-143 502.00
IUUC-Uma-129321 Ustilago maydis 40.54 5.00e-106 378.00
IUUC-Vpa-130686 Vicugna pacos 37.24 6.00e-108 384.00
IUUC-Vvi-131046 Vitis vinifera 38.53 2.00e-98 352.00
IUUC-Xtr-132740 Xenopus tropicalis 38.45 5.00e-138 483.00
IUUC-Xma-134260 Xiphophorus maculatus 41.50 4.00e-133 467.00
IUUC-Yli-134634 Yarrowia lipolytica 38.07 4.00e-125 441.00
IUUC-Zma-135493 Zea mays 38.08 2.00e-98 352.00
Created Date 25-Jun-2017

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