iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
microRNA	TRANSFAC	RAID2
Protein-protein Interaction
IID	iRefIndex	Mentha
Post-translational Modifications (PTMs)
dbPTM	UniProt
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UBL/NEDD8	2.60e-41	140.1	1	76
ULD/UDP/UBQ/UBQ_PIM	1.60e-29	102.0	1	73

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UBL/NEDD8

   S: 1    mlikvktLtgkeieieieesdtierikerveekeGiPPsqqrliyaGkqleddktaadynlekgsvLhLvLaLrGG 76
           m+i+vktLtgk+i++e+e+sdtie++k+++++keGiPP+qqrli+aGkqled++t++dyn++k+s+LhLvL+LrGG
   Q: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
           89*************************************************************************9 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesgvppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkk 73
           m+++vktl+gk+++lev+++dt+e++K+ki+++ g+pp+qq+LI+aGk+L+D +tLs+++i+++s++hlv++ 
   Q: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73
           99********************************************************************986 PP

Organism

Rattus norvegicus

Functional Description
(View)

60S ribosomal protein L40: Component of the 60S subunit of the ribosome.

Protein Sequence
(Fasta)

MQIFVKTLTG KTITLEVEPS DTIENVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLSDYN 60
IQKESTLHLV LRLRGGIIEP SLRQLAQKYN CDKMICRKCY ARLHPRAVNC RKKKCGHTNN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCGCTGTCCT CTTTCTCTTC AACGAGGCGG CCGAGCGGGT TGGTGTTGGC CCCGTCGCTG 60
ACGGGCTGGT GGCGCCTGGG CCGGGGCCGG GATGCGGCGG GAACCGGCGA GGGGACTGTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0903--Direct protein sequencing
KW-1017--Isopeptide bond
KW-0488--Methylation
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0687--Ribonucleoprotein
KW-0689--Ribosomal protein
KW-0832--Ubl conjugation

Interpro

IPR001975--Ribosomal_L40e
IPR019956--Ubiquitin
IPR029071--Ubiquitin-rel_dom
IPR019954--Ubiquitin_CS
IPR000626--Ubiquitin_dom

PROSITE

PS00299--UBIQUITIN_1
PS50053--UBIQUITIN_2

Pfam

PF01020--Ribosomal_L40e
PF00240--ubiquitin

PRINTS

PR00348--UBIQUITIN

SMART

SM01377--Ribosomal_L40e
SM00213--UBQ

Gene Ontology

GO:0005737--C:cytoplasm
GO:0022625--C:cytosolic large ribosomal subunit
GO:0005783--C:endoplasmic reticulum
GO:0070062--C:extracellular exosome
GO:0005615--C:extracellular space
GO:0005765--C:lysosomal membrane
GO:0043209--C:myelin sheath
GO:0005654--C:nucleoplasm
GO:0005634--C:nucleus
GO:0005886--C:plasma membrane
GO:0003735--F:structural constituent of ribosome
GO:0017085--P:response to insecticide
GO:0006412--P:translation

KEGG

rno:64156

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001006	Aegilops tauschii	57.62	1.00e-42	164.00
IUUC-Aml-001246	Ailuropoda melanoleuca	100.00	2.00e-72	263.00
IUUC-Atr-003081	Amborella trichopoda	72.87	1.00e-44	171.00
IUUC-Apl-004069	Anas platyrhynchos	98.80	4.00e-45	171.00
IUUC-Ath-007098	Arabidopsis thaliana	92.19	1.00e-66	244.00
IUUC-Ago-007932	Ashbya gossypii	89.84	4.00e-65	239.00
IUUC-Acl-008350	Aspergillus clavatus	84.21	1.00e-61	227.00
IUUC-Afl-008554	Aspergillus flavus	90.62	1.00e-65	241.00
IUUC-Afu-008984	Aspergillus fumigatus	89.06	6.00e-64	235.00
IUUC-Ang-009609	Aspergillus niger	89.84	1.00e-64	237.00
IUUC-Aor-009991	Aspergillus oryzae	88.98	2.00e-63	233.00
IUUC-Ate-010252	Aspergillus terreus	90.40	6.00e-64	238.00
IUUC-Ame-010785	Astyanax mexicanus	96.84	6.00e-52	194.00
IUUC-Bgr-012115	Blumeria graminis	90.40	1.00e-63	235.00
IUUC-Bta-013360	Bos taurus	100.00	2.00e-72	263.00
IUUC-Bci-013851	Botrytis cinerea	90.62	9.00e-66	241.00
IUUC-Bdi-014499	Brachypodium distachyon	91.41	3.00e-66	243.00
IUUC-Bol-015961	Brassica oleracea	92.19	1.00e-66	244.00
IUUC-Cel-018677	Caenorhabditis elegans	92.97	5.00e-66	242.00
IUUC-Cja-019572	Callithrix jacchus	100.00	2.00e-72	263.00
IUUC-Cfa-020339	Canis familiaris	100.00	2.00e-72	263.00
IUUC-Cpo-021534	Cavia porcellus	100.00	2.00e-72	263.00
IUUC-Cre-022567	Chlamydomonas reinhardtii	91.41	1.00e-65	241.00
IUUC-Csa-023398	Chlorocebus sabaeus	100.00	2.00e-72	263.00
IUUC-Cin-025266	Ciona intestinalis	92.19	1.00e-66	244.00
IUUC-Csv-026105	Ciona savignyi	92.13	2.00e-66	244.00
IUUC-Cgl-026502	Colletotrichum gloeosporioides	90.40	1.00e-63	237.00
IUUC-Cne-026913	Cryptococcus neoformans	86.72	3.00e-63	233.00
IUUC-Cme-027344	Cyanidioschyzon merolae	93.41	6.00e-46	175.00
IUUC-Dre-028761	Danio rerio	98.44	2.00e-71	260.00
IUUC-Dno-028899	Dasypus novemcinctus	99.22	3.00e-71	259.00
IUUC-Dme-031588	Drosophila melanogaster	97.66	1.00e-70	257.00
IUUC-Ete-033120	Echinops telfairi	100.00	2.00e-72	263.00
IUUC-Eca-033787	Equus caballus	100.00	2.00e-72	263.00
IUUC-Fca-035725	Felis catus	100.00	2.00e-72	263.00
IUUC-Fox-037870	Fusarium oxysporum	90.62	8.00e-66	241.00
IUUC-Fso-038461	Fusarium solani	95.00	1.00e-40	156.00
IUUC-Gmo-039163	Gadus morhua	98.44	2.00e-71	260.00
IUUC-Ggr-040034	Gaeumannomyces graminis	90.62	6.00e-66	242.00
IUUC-Gga-040909	Gallus gallus	98.44	1.00e-71	260.00
IUUC-Gac-041640	Gasterosteus aculeatus	99.22	4.00e-72	262.00
IUUC-Gma-043254	Glycine max	92.19	3.00e-67	246.00
IUUC-Ggo-045411	Gorilla gorilla	100.00	2.00e-72	263.00
IUUC-Hsa-046609	Homo sapiens	79.71	9.00e-57	211.00
IUUC-Hvu-047579	Hordeum vulgare	69.12	2.00e-49	187.00
IUUC-Itr-048586	Ictidomys tridecemlineatus	100.00	5.00e-73	267.00
IUUC-Kpa-049279	Komagataella pastoris	89.06	1.00e-64	238.00
IUUC-Lch-049971	Latimeria chalumnae	97.66	5.00e-71	260.00
IUUC-Lpe-051472	Leersia perrieri	80.30	1.00e-51	197.00
IUUC-Loc-052117	Lepisosteus oculatus	99.22	3.00e-72	263.00
IUUC-Lma-053049	Leptosphaeria maculans	92.97	5.00e-67	245.00
IUUC-Laf-054284	Loxodonta africana	100.00	4.00e-73	267.00
IUUC-Mcc-055710	Macaca mulatta	98.46	1.00e-71	262.00
IUUC-Meu-056411	Macropus eugenii	100.00	2.00e-72	263.00
IUUC-Mor-057008	Magnaporthe oryzae	89.06	1.00e-64	238.00
IUUC-Mpo-057360	Magnaporthe poae	89.84	2.00e-65	240.00
IUUC-Mtr-058437	Medicago truncatula	91.41	8.00e-66	241.00
IUUC-Mla-059080	Melampsora laricipopulina	87.38	3.00e-49	186.00
IUUC-Mmr-061335	Microcebus murinus	93.75	1.00e-65	240.00
IUUC-Mdo-062752	Monodelphis domestica	100.00	2.00e-72	263.00
IUUC-Mmu-063548	Mus musculus	100.00	4.00e-73	267.00
IUUC-Mac-064915	Musa acuminata	91.41	4.00e-66	242.00
IUUC-Mpu-066513	Mustela putorius furo	100.00	2.00e-72	263.00
IUUC-Mlu-068010	Myotis lucifugus	97.66	8.00e-71	258.00
IUUC-Nfi-068358	Neosartorya fischeri	90.48	6.00e-64	235.00
IUUC-Ncr-068799	Neurospora crassa	90.62	2.00e-65	240.00
IUUC-Opr-070655	Ochotona princeps	100.00	2.00e-72	263.00
IUUC-Ont-072180	Oreochromis niloticus	100.00	3.00e-71	259.00
IUUC-Oan-073196	Ornithorhynchus anatinus	100.00	2.00e-72	263.00
IUUC-Oba-075092	Oryza barthii	92.19	9.00e-67	244.00
IUUC-Obr-076156	Oryza brachyantha	92.19	7.00e-67	245.00
IUUC-Ogl-077471	Oryza glaberrima	92.19	9.00e-67	244.00
IUUC-Ogu-078259	Oryza glumaepatula	92.19	9.00e-67	244.00
IUUC-Oin-079901	Oryza indica	92.19	9.00e-67	244.00
IUUC-Olo-080789	Oryza longistaminata	43.53	3.00e-16	78.60
IUUC-Ome-081343	Oryza meridionalis	92.19	9.00e-67	244.00
IUUC-Oni-082301	Oryza nivara	85.26	6.00e-33	133.00
IUUC-Opu-083839	Oryza punctata	66.17	3.00e-36	146.00
IUUC-Oru-085252	Oryza rufipogon	92.19	9.00e-67	244.00
IUUC-Osa-085747	Oryza sativa	79.10	1.00e-50	191.00
IUUC-Ola-086333	Oryzias latipes	97.66	1.00e-70	257.00
IUUC-Olu-087819	Ostreococcus lucimarinus	82.81	4.00e-59	219.00
IUUC-Oga-088027	Otolemur garnettii	100.00	2.00e-72	263.00
IUUC-Oar-090419	Ovis aries	100.00	2.00e-72	263.00
IUUC-Ptr-091593	Pan troglodytes	100.00	2.00e-72	263.00
IUUC-Pan-091806	Papio anubis	96.09	4.00e-68	249.00
IUUC-Psi-093654	Pelodiscus sinensis	100.00	2.00e-72	263.00
IUUC-Ppa-095174	Physcomitrella patens	90.62	1.00e-65	240.00
IUUC-Pfo-096492	Poecilia formosa	99.22	5.00e-72	262.00
IUUC-Pab-098004	Pongo abelii	100.00	2.00e-72	263.00
IUUC-Pop-098929	Populus trichocarpa	91.41	4.00e-66	242.00
IUUC-Ppe-101497	Prunus persica	92.97	7.00e-67	244.00
IUUC-Pva-102945	Pteropus vampyrus	100.00	2.00e-72	263.00
IUUC-Pgr-103268	Puccinia graminis	86.72	6.00e-64	236.00
IUUC-Ptt-103804	Puccinia triticina	90.10	3.00e-51	193.00
IUUC-Pte-104101	Pyrenophora teres	92.19	1.00e-66	244.00
IUUC-Pyt-104639	Pyrenophora triticirepentis	92.19	3.00e-66	243.00
IUUC-Sce-106249	Saccharomyces cerevisiae	89.84	3.00e-65	239.00
IUUC-Sha-106570	Sarcophilus harrisii	100.00	2.00e-72	263.00
IUUC-Sja-107834	Schizosaccharomyces japonicus	91.41	5.00e-66	242.00
IUUC-Spo-108045	Schizosaccharomyces pombe	90.62	3.00e-65	239.00
IUUC-Ssl-108670	Sclerotinia sclerotiorum	91.41	6.00e-66	242.00
IUUC-Sit-110085	Setaria italica	88.28	2.00e-65	241.00
IUUC-Sly-111884	Solanum lycopersicum	91.41	4.00e-66	242.00
IUUC-Stu-112385	Solanum tuberosum	90.91	4.00e-62	229.00
IUUC-Sar-112942	Sorex araneus	97.66	3.00e-71	259.00
IUUC-Sbi-114790	Sorghum bicolor	91.41	3.00e-66	243.00
IUUC-Sre-114908	Sporisorium reilianum	89.84	2.00e-64	236.00
IUUC-Ssc-116417	Sus scrofa	100.00	2.00e-72	263.00
IUUC-Tru-117557	Takifugu rubripes	98.44	2.00e-71	260.00
IUUC-Tni-119715	Tetraodon nigroviridis	98.44	2.00e-71	260.00
IUUC-Tca-121404	Theobroma cacao	92.19	1.00e-66	244.00
IUUC-Tvi-122611	Trichoderma virens	89.84	2.00e-65	240.00
IUUC-Tae-123019	Triticum aestivum	74.52	2.00e-61	228.00
IUUC-Tur-126527	Triticum urartu	91.41	3.00e-66	243.00
IUUC-Tme-127138	Tuber melanosporum	91.20	1.00e-64	238.00
IUUC-Tbe-127851	Tupaia belangeri	100.00	1.00e-40	157.00
IUUC-Ttr-128939	Tursiops truncatus	100.00	2.00e-72	263.00
IUUC-Uma-129619	Ustilago maydis	89.84	2.00e-64	236.00
IUUC-Vda-129775	Verticillium dahliae	88.89	2.00e-63	233.00
IUUC-Vvi-130859	Vitis vinifera	92.97	3.00e-67	246.00
IUUC-Xtr-131921	Xenopus tropicalis	100.00	2.00e-72	263.00
IUUC-Xma-134071	Xiphophorus maculatus	99.22	5.00e-72	262.00
IUUC-Yli-134671	Yarrowia lipolytica	90.62	3.00e-65	239.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence