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Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Dme-031993
UUCD1 version UUC-DrM-00264
Ensembl Protein ID FBpp0085224
UniProt Accession Q9V9V0; Q9V9V0_DROME
Genbank Protein ID AAF57183.1; AAM11155.1
Protein Name CstF-50; LD24780p
Genbank Nucleotide ID AE014297; AY094802
Gene Name CstF-50; CG2261; Dmel_CG2261
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
FBgn0039867 FBtr0085865 FBpp0085224
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
microRNARAID2
Protein-protein Interaction
IIDiRefIndexPINAMentha
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.00e-29 101.4 165 196
UBD/Beta-Prp 3.20e-58 197.3 102 422
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlr 31
    Htd+v+ l+f + ++l+s+s+Dgt+k++D+
   Q: 165 HTDEVSYLEFhPKeHILASASRDGTVKLFDIA 196
    ***********776999*************75 PP
   


   UBD/Beta-Prp

   S: 6    kghhksvitcvkfspdksllatgsrdgtikvwdvttgkl..................lrslsgheaevtavkfspdgkilvtgseDrtikvwdls..t 83
    ++hk+ +++ +fs d+sl+atgs d++ik+ dv+++ + +r+l++h++ev+ ++f+p++ il+++s+D+t+k++d+ +
   Q: 102 VTSHKQACRAGAFSCDGSLVATGSVDASIKILDVERMLAksapediepgreqqghpvIRTLYDHTDEVSYLEFHPKEHILASASRDGTVKLFDIAkpS 199
    5789999*****************************998*******************************************************9444 PP
   S: 84 gkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqclee..tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltggh 179
    k h++ + vl+lsf+p+gd++++G++++++rv+d+ t qc+ + + ++h++ v+cv+++p+g+l+++Gs+D+ +++Wd +g+++ t ++h
   Q: 200 VKKAHKVFTDCEPVLCLSFHPTGDYVAIGTEHNVLRVYDVATTQCFVSaiPSQQHKAGVTCVKYSPTGKLYATGSYDGDIKIWDGISGRCINTIAEAH 297
    455666668999*************************************9********************************************8888 PP
   S: 180 td.svyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfs....pnderlvsgssDgsiri..Wdlrsgdllktlqlhnssvisv 270
    + ++ sl+f++ngk+l+s ++d+ v lw+l t++ ++t++g ++ k+ + + +++e +v ++ + ++ W++r+g l+ +l ++ +
   Q: 298 GGaAICSLEFTRNGKYLLSSGMDSLVYLWELCTSRPIQTYTGAGTTGKQEHQTeavfNHTEDYVLFPDEATTSLcsWNSRNGCRLTLNSLGHNGPVRY 395
    7636999***********************************9988888776666669*********999888888******9999999999888888 PP
   S: 271 avlsfgdnvlvlgsedskvniwklkkn 297
    ++s++++ ++++s+d ++++w + n
   Q: 396 ITHSPNGPAFLTCSDDFRARFWYRRAN 422
    889*******************98876 PP
   

Organism Drosophila melanogaster
Protein Sequence
(Fasta)
MRDEILDPSN LVKNREILYR LMISQLMYDG LEKFAMELSM LVKADQCAPS ERLLHVMIAG 60
MQTLSDKDKT NSDDVLPGID LEFEPEASAL APEPHSYETA YVTSHKQACR AGAFSCDGSL 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Dme-031993|E3,WD_repeat;UBD,Beta-Prp|Drosophila melanogaster
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TGTTTTCGAT AACGATAACG GCACGGCGTT ATCTACAAGA TTTTGTTTAT ATCCGTAGGA 60
AACAAAATAT AAATTAAGCC ACCATGCGTG ATGAGATTTT GGACCCCAGT AACCTAGTGA 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Dme-031993|E3,WD_repeat;UBD,Beta-Prp|Drosophila melanogaster
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR024977--Apc4_WD40_dom
IPR032028--CSTF1_dimer
IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12894--ANAPC4_WD40
PF16699--CSTF1_dimer
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005848--C:mRNA cleavage stimulating factor complex
GO:0005654--C:nucleoplasm

KEGG dme:Dmel_CG2261
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-002163 Ailuropoda melanoleuca 55.34 1.00e-133 468.00
IUUC-Atr-002687 Amborella trichopoda 31.09 1.00e-55 209.00
IUUC-Apl-003438 Anas platyrhynchos 54.63 3.00e-132 464.00
IUUC-Aca-005178 Anolis carolinensis 54.82 1.00e-132 465.00
IUUC-Aly-005791 Arabidopsis lyrata 38.20 3.00e-70 258.00
IUUC-Ath-006689 Arabidopsis thaliana 38.20 2.00e-69 255.00
IUUC-Ame-011217 Astyanax mexicanus 55.40 7.00e-96 342.00
IUUC-Bta-012619 Bos taurus 55.11 3.00e-133 467.00
IUUC-Bdi-014515 Brachypodium distachyon 40.50 8.00e-68 249.00
IUUC-Bra-017450 Brassica rapa 36.49 1.00e-68 253.00
IUUC-Cel-018151 Caenorhabditis elegans 49.05 5.00e-120 423.00
IUUC-Cja-019304 Callithrix jacchus 55.11 2.00e-132 464.00
IUUC-Cfa-020208 Canis familiaris 55.34 1.00e-133 468.00
IUUC-Cpo-022245 Cavia porcellus 55.34 1.00e-133 468.00
IUUC-Csa-023066 Chlorocebus sabaeus 55.11 2.00e-132 464.00
IUUC-Cho-024770 Choloepus hoffmanni 57.98 2.00e-122 431.00
IUUC-Cin-025621 Ciona intestinalis 51.98 1.00e-123 435.00
IUUC-Csv-026071 Ciona savignyi 54.48 4.00e-129 453.00
IUUC-Dre-028254 Danio rerio 53.16 1.00e-127 449.00
IUUC-Dno-029903 Dasypus novemcinctus 55.34 1.00e-133 468.00
IUUC-Dor-030423 Dipodomys ordii 55.58 1.00e-133 469.00
IUUC-Ete-032689 Echinops telfairi 68.29 3.00e-31 128.00
IUUC-Eca-033316 Equus caballus 55.11 3.00e-133 467.00
IUUC-Eeu-035192 Erinaceus europaeus 53.21 9.00e-127 446.00
IUUC-Fca-036447 Felis catus 55.34 1.00e-133 468.00
IUUC-Fal-037601 Ficedula albicollis 54.63 3.00e-132 464.00
IUUC-Gmo-038531 Gadus morhua 53.27 8.00e-125 439.00
IUUC-Gga-040869 Gallus gallus 54.63 5.00e-132 463.00
IUUC-Gac-042380 Gasterosteus aculeatus 53.18 5.00e-126 443.00
IUUC-Gma-043478 Glycine max 34.70 2.00e-70 258.00
IUUC-Ggo-045302 Gorilla gorilla 55.11 2.00e-132 464.00
IUUC-Hsa-045678 Homo sapiens 55.11 2.00e-132 464.00
IUUC-Hvu-047301 Hordeum vulgare 40.92 2.00e-70 258.00
IUUC-Itr-048259 Ictidomys tridecemlineatus 55.34 1.00e-133 468.00
IUUC-Lch-050319 Latimeria chalumnae 54.01 5.00e-132 463.00
IUUC-Lpe-051440 Leersia perrieri 38.53 1.00e-56 213.00
IUUC-Loc-052035 Lepisosteus oculatus 54.01 1.00e-129 455.00
IUUC-Laf-054275 Loxodonta africana 55.34 1.00e-133 468.00
IUUC-Mcc-055857 Macaca mulatta 48.56 2.00e-108 384.00
IUUC-Meu-056194 Macropus eugenii 59.57 7.00e-41 159.00
IUUC-Mtr-058667 Medicago truncatula 32.17 5.00e-65 240.00
IUUC-Mga-059710 Meleagris gallopavo 54.63 5.00e-132 463.00
IUUC-Mmr-060604 Microcebus murinus 55.34 1.00e-133 468.00
IUUC-Mdo-062953 Monodelphis domestica 55.11 2.00e-133 468.00
IUUC-Mmu-064292 Mus musculus 55.11 2.00e-133 468.00
IUUC-Mac-064568 Musa acuminata 37.50 7.00e-67 246.00
IUUC-Mpu-066294 Mustela putorius furo 55.26 3.00e-76 278.00
IUUC-Mlu-067995 Myotis lucifugus 54.29 1.00e-132 465.00
IUUC-Nle-069322 Nomascus leucogenys 55.11 2.00e-132 464.00
IUUC-Opr-070580 Ochotona princeps 55.11 3.00e-133 467.00
IUUC-Ont-072554 Oreochromis niloticus 53.86 4.00e-130 457.00
IUUC-Oan-072856 Ornithorhynchus anatinus 55.11 2.00e-133 467.00
IUUC-Ocu-074150 Oryctolagus cuniculus 47.87 1.00e-103 369.00
IUUC-Oba-075585 Oryza barthii 36.29 1.00e-59 223.00
IUUC-Obr-076069 Oryza brachyantha 39.01 5.00e-65 240.00
IUUC-Ogl-077045 Oryza glaberrima 39.63 2.00e-68 252.00
IUUC-Ogu-078697 Oryza glumaepatula 39.68 5.00e-64 239.00
IUUC-Oin-080119 Oryza indica 39.63 2.00e-68 252.00
IUUC-Olo-081093 Oryza longistaminata 30.13 3.00e-38 153.00
IUUC-Ome-081718 Oryza meridionalis 33.13 1.00e-50 193.00
IUUC-Oni-082072 Oryza nivara 36.29 1.00e-59 223.00
IUUC-Opu-084080 Oryza punctata 33.75 6.00e-52 197.00
IUUC-Oru-085070 Oryza rufipogon 36.64 6.00e-60 225.00
IUUC-Osa-086149 Oryza sativa 39.63 2.00e-68 252.00
IUUC-Ola-086697 Oryzias latipes 53.16 3.00e-129 454.00
IUUC-Oga-088697 Otolemur garnettii 55.34 1.00e-133 468.00
IUUC-Oar-089774 Ovis aries 55.34 1.00e-133 468.00
IUUC-Ptr-090924 Pan troglodytes 55.11 2.00e-132 464.00
IUUC-Pan-092373 Papio anubis 55.11 1.00e-132 465.00
IUUC-Psi-094001 Pelodiscus sinensis 54.63 1.00e-131 462.00
IUUC-Pma-094274 Petromyzon marinus 55.40 1.00e-132 465.00
IUUC-Ppa-095562 Physcomitrella patens 41.05 1.00e-72 266.00
IUUC-Pfo-097235 Poecilia formosa 53.88 7.00e-130 456.00
IUUC-Pab-098608 Pongo abelii 55.11 2.00e-132 464.00
IUUC-Pca-100268 Procavia capensis 55.11 3.00e-133 467.00
IUUC-Ppe-101425 Prunus persica 39.75 2.00e-70 259.00
IUUC-Pva-103183 Pteropus vampyrus 55.34 1.00e-133 468.00
IUUC-Rno-105097 Rattus norvegicus 55.11 2.00e-133 468.00
IUUC-Sha-107642 Sarcophilus harrisii 55.11 2.00e-133 468.00
IUUC-Smo-108680 Selaginella moellendorffii 38.82 4.00e-66 244.00
IUUC-Sit-110471 Setaria italica 41.74 6.00e-70 258.00
IUUC-Sly-111143 Solanum lycopersicum 30.45 2.00e-28 118.00
IUUC-Stu-111926 Solanum tuberosum 39.49 2.00e-29 120.00
IUUC-Sar-112947 Sorex araneus 54.74 5.00e-85 306.00
IUUC-Sbi-113769 Sorghum bicolor 40.81 1.00e-69 256.00
IUUC-Ssc-115736 Sus scrofa 55.34 1.00e-133 468.00
IUUC-Tgu-117457 Taeniopygia guttata 54.63 3.00e-132 464.00
IUUC-Tru-117760 Takifugu rubripes 53.30 2.00e-129 454.00
IUUC-Tsy-118943 Tarsius syrichta 55.11 1.00e-130 458.00
IUUC-Tni-120081 Tetraodon nigroviridis 53.77 3.00e-130 457.00
IUUC-Tca-121190 Theobroma cacao 39.75 8.00e-70 256.00
IUUC-Tae-125535 Triticum aestivum 41.54 3.00e-72 265.00
IUUC-Tur-126329 Triticum urartu 41.23 3.00e-71 262.00
IUUC-Tbe-127878 Tupaia belangeri 54.68 6.00e-130 456.00
IUUC-Ttr-128985 Tursiops truncatus 55.34 1.00e-133 468.00
IUUC-Vpa-130147 Vicugna pacos 55.34 1.00e-133 468.00
IUUC-Vvi-130935 Vitis vinifera 38.51 6.00e-68 250.00
IUUC-Xtr-132482 Xenopus tropicalis 54.63 1.00e-131 462.00
IUUC-Xma-133929 Xiphophorus maculatus 53.88 7.00e-130 456.00
Created Date 25-Jun-2017

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