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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Sce-106351
UUCD1 version UUC-SaC-00103
Ensembl Protein ID YKL213C
UniProt Accession P36037; D6VWZ0; DOA1_YEAST
Genbank Protein ID AAA82258.1; CAA53560.1; CAA82058.1; DAA08956.1
Protein Name Protein DOA1
Genbank Nucleotide ID U39947; X75951; Z28213; BK006944
Gene Name DOA1; UFD3; ZZZ4; YKL213C
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
YKL213C YKL213C YKL213C
Annotation
mRNA Expression
GEOFFGED
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
IIDiRefIndexHINTMentha
Protein 3D Structure
PDBMMDB
Post-translational Modifications (PTMs)
CPLMdbPAFdbPTMUniProt
BioGRID
Protein Expression/Proteomics
GPMDB
Status Reviewed
Details
Family Domain References (PMIDs)
UBD/PFU PFU 19805280; 21070969; 16428438; 24607902; 21070969
UBD/Beta-Prp Beta-Prp 19805280; 21070969; 16428438; 21070969
Classification
Family E-value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.20e-27 93.2 218 253
UBD/Beta-Prp 1.00e-62 210.4 7 293
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDlrtgvl 35
    gH++ v+c+++ +++ +vs++ D t+++W+ g l
   Q: 218 GHESFVYCIKLlPNGDIVSCGEDRTVRIWSKENGSL 253
    8*********998899*************9877765 PP
   


   UBD/Beta-Prp

   S: 3    ktlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseD...rtikvwdlstgkcvhtlkghedsvlsl 100
    +tlkgh+++v +v++ d+s +a+ srdgt+++w+ ++++l ++ +++ ++v++++++++l+ g++D + + ++ s ++++tl gh+ +v+sl
   Q: 7 ATLKGHDQDVRDVVAV--DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDtmiNGVPLFATSGEDPLYTLIGHQGNVCSL 105
    699*************..***********************97777*************************7777778*********************** PP
   S: 101 sfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsl 200
    sf+ +++sGs+d+t++vw ++g+ ++ l+ h+++v+ ++v +++ n + ++s+D+t++lW +++k+++t++g h+d v++l++ ++g +++s+s+
   Q: 106 SFQD--GVVISGSWDKTAKVW--KEGSLVY-NLQAHNASVWDAKVVSFSeNKFLTASADKTIKLW--QNDKVIKTFSGIHNDVVRHLAVVDDG-HFISCSN 198
    ****..***************..9999999.**********************************..88*******************99998.******* PP
   S: 201 dgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvniwklkkne 298
    dg +kl+d++tg+++rt++gh+++v++++++pn+ +vs+++D+++riW +++g l ++++l++ s++sv++ +++ ++ gs+d+ v+i++++k++
   Q: 199 DGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDC--MSNGDIIVGSSDNLVRIFSQEKSR 293
    *******************************555.688999*******************************..*******************99876 PP
   

Organism Saccharomyces cerevisiae
Functional Description
(View)

Functional Description



     Participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. May act by preventing the interaction between CDC48 and the E4 enzyme UFD2, leading to prevent multiubiquitination of substrates and subsequent degradation. Essential for maintaining cellular ubiquitin levels.
Participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. May act by preventing the interaction between CDC48 and the E4 enzyme UFD2, leading to prevent multiubiquitination of substrates and subsequent degradation. Essential for maintaining cellular ubiquitin levels.
Protein Sequence
(Fasta)
MGYQLSATLK GHDQDVRDVV AVDDSKVASV SRDGTVRLWS KDDQWLGTVV YTGQGFLNSV 60
CYDSEKELLL FGGKDTMING VPLFATSGED PLYTLIGHQG NVCSLSFQDG VVISGSWDKT 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Sce-106351|UBD,PFU;UBD,Beta-Prp;E3,WD_repeat|Saccharomyces cerevisiae
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGGGATATC AATTGAGTGC AACACTTAAA GGGCACGATC AGGACGTCAG GGATGTGGTA 60
GCTGTGGATG ATTCAAAGGT TGCTAGTGTT TCGAGGGATG GAACAGTTCG CTTGTGGTCT 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Sce-106351|UBD,PFU;UBD,Beta-Prp;E3,WD_repeat|Saccharomyces cerevisiae
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0002--3D-structure
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0903--Direct protein sequencing
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0677--Repeat
KW-0833--Ubl conjugation pathway
KW-0853--WD repeat

Interpro

IPR016024--ARM-type_fold
IPR020472--G-protein_beta_WD-40_rep
IPR033510--PLAA/Doa1/Lub1
IPR015155--PLAA_fam_Ub-bd_PFU
IPR013535--PUL_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS51394--PFU
PS51396--PUL
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF09070--PFU
PF08324--PUL
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0043130--F:ubiquitin binding
GO:0006303--P:double-strand break repair via nonhomologous end joining
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0034517--P:ribophagy
GO:0010992--P:ubiquitin homeostasis
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG sce:YKL213C
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000146 Aegilops tauschii 27.94 4.00e-52 197.00
IUUC-Aml-002125 Ailuropoda melanoleuca 32.45 2.00e-90 325.00
IUUC-Atr-002554 Amborella trichopoda 28.36 4.00e-60 224.00
IUUC-Apl-004094 Anas platyrhynchos 32.08 8.00e-83 299.00
IUUC-Aca-004726 Anolis carolinensis 32.74 1.00e-94 338.00
IUUC-Aly-005961 Arabidopsis lyrata 31.11 9.00e-67 246.00
IUUC-Ath-006639 Arabidopsis thaliana 31.01 6.00e-66 243.00
IUUC-Ago-007772 Ashbya gossypii 49.93 0.00e+00 732.00
IUUC-Acl-008316 Aspergillus clavatus 33.33 3.00e-84 304.00
IUUC-Afl-008532 Aspergillus flavus 32.85 6.00e-85 306.00
IUUC-Afu-008950 Aspergillus fumigatus 33.75 5.00e-89 320.00
IUUC-Ani-009186 Aspergillus nidulans 32.79 7.00e-92 329.00
IUUC-Ang-009575 Aspergillus niger 34.29 2.00e-90 324.00
IUUC-Aor-010086 Aspergillus oryzae 32.85 6.00e-85 306.00
IUUC-Ate-010541 Aspergillus terreus 34.27 2.00e-87 315.00
IUUC-Ame-011633 Astyanax mexicanus 40.42 2.00e-83 301.00
IUUC-Bgr-012292 Blumeria graminis 30.59 6.00e-80 290.00
IUUC-Bta-013218 Bos taurus 32.45 3.00e-90 324.00
IUUC-Bci-013876 Botrytis cinerea 33.47 2.00e-86 311.00
IUUC-Bdi-014810 Brachypodium distachyon 29.44 1.00e-63 236.00
IUUC-Bol-016006 Brassica oleracea 29.15 1.00e-65 242.00
IUUC-Bra-017593 Brassica rapa 29.15 4.00e-65 240.00
IUUC-Cel-018703 Caenorhabditis elegans 27.95 8.00e-41 160.00
IUUC-Cja-019270 Callithrix jacchus 32.62 8.00e-90 322.00
IUUC-Cfa-021262 Canis familiaris 32.16 4.00e-90 323.00
IUUC-Cpo-021449 Cavia porcellus 31.64 6.00e-79 286.00
IUUC-Csa-024140 Chlorocebus sabaeus 32.75 2.00e-90 324.00
IUUC-Cho-024923 Choloepus hoffmanni 40.25 7.00e-38 150.00
IUUC-Cin-025373 Ciona intestinalis 28.74 2.00e-74 271.00
IUUC-Csv-026324 Ciona savignyi 35.22 6.00e-72 263.00
IUUC-Cgl-026711 Colletotrichum gloeosporioides 30.97 1.00e-70 259.00
IUUC-Cne-026998 Cryptococcus neoformans 39.52 2.00e-65 242.00
IUUC-Cme-027154 Cyanidioschyzon merolae 28.60 8.00e-39 153.00
IUUC-Dre-028674 Danio rerio 31.85 5.00e-89 320.00
IUUC-Dno-028966 Dasypus novemcinctus 32.37 4.00e-91 327.00
IUUC-Dor-030343 Dipodomys ordii 39.66 2.00e-30 125.00
IUUC-Dse-031385 Dothistroma septosporum 32.58 5.00e-84 303.00
IUUC-Dme-032044 Drosophila melanogaster 35.36 3.00e-71 261.00
IUUC-Ete-032506 Echinops telfairi 39.66 2.00e-30 125.00
IUUC-Eca-033547 Equus caballus 33.21 5.00e-92 330.00
IUUC-Eeu-034462 Erinaceus europaeus 41.49 3.00e-38 151.00
IUUC-Fca-035893 Felis catus 32.91 2.00e-91 327.00
IUUC-Fal-037235 Ficedula albicollis 32.06 8.00e-88 316.00
IUUC-Fox-037836 Fusarium oxysporum 34.15 3.00e-90 324.00
IUUC-Fso-038251 Fusarium solani 34.68 4.00e-90 323.00
IUUC-Gmo-038648 Gadus morhua 39.79 3.00e-85 307.00
IUUC-Ggr-039867 Gaeumannomyces graminis 29.71 8.00e-74 270.00
IUUC-Gga-040989 Gallus gallus 31.14 4.00e-84 303.00
IUUC-Gac-041344 Gasterosteus aculeatus 39.22 3.00e-77 281.00
IUUC-Gma-043067 Glycine max 31.81 1.00e-67 249.00
IUUC-Ggo-045009 Gorilla gorilla 40.00 2.00e-85 307.00
IUUC-Hsa-046807 Homo sapiens 32.36 1.00e-89 322.00
IUUC-Itr-048636 Ictidomys tridecemlineatus 33.71 2.00e-90 324.00
IUUC-Kpa-049134 Komagataella pastoris 40.11 1.00e-138 484.00
IUUC-Lch-049597 Latimeria chalumnae 38.36 8.00e-79 285.00
IUUC-Lpe-050821 Leersia perrieri 29.05 1.00e-60 225.00
IUUC-Loc-051849 Lepisosteus oculatus 40.48 5.00e-85 306.00
IUUC-Lma-053297 Leptosphaeria maculans 32.95 2.00e-91 327.00
IUUC-Laf-053495 Loxodonta africana 32.62 8.00e-90 322.00
IUUC-Meu-055983 Macropus eugenii 41.78 7.00e-32 130.00
IUUC-Mor-057006 Magnaporthe oryzae 33.21 3.00e-66 244.00
IUUC-Mpo-057465 Magnaporthe poae 29.14 2.00e-70 258.00
IUUC-Mtr-058374 Medicago truncatula 29.80 1.00e-67 249.00
IUUC-Mla-058895 Melampsora laricipopulina 39.22 1.00e-85 308.00
IUUC-Mvi-060297 Microbotryum violaceum 41.53 5.00e-88 317.00
IUUC-Mmr-060810 Microcebus murinus 30.90 8.00e-74 269.00
IUUC-Mdo-062671 Monodelphis domestica 32.25 1.00e-91 328.00
IUUC-Mmu-063536 Mus musculus 32.53 2.00e-87 315.00
IUUC-Mac-064902 Musa acuminata 29.51 2.00e-61 228.00
IUUC-Mpu-066085 Mustela putorius furo 32.95 3.00e-91 327.00
IUUC-Mlu-067907 Myotis lucifugus 40.00 4.00e-85 306.00
IUUC-Nfi-068457 Neosartorya fischeri 32.86 6.00e-78 283.00
IUUC-Ncr-068622 Neurospora crassa 31.19 1.00e-81 295.00
IUUC-Nle-069049 Nomascus leucogenys 32.57 3.00e-89 320.00
IUUC-Opr-071013 Ochotona princeps 40.54 1.00e-24 106.00
IUUC-Ont-071339 Oreochromis niloticus 39.35 6.00e-85 306.00
IUUC-Oan-073353 Ornithorhynchus anatinus 40.09 4.00e-41 159.00
IUUC-Ocu-074625 Oryctolagus cuniculus 32.62 7.00e-91 326.00
IUUC-Oba-075226 Oryza barthii 30.16 1.00e-50 192.00
IUUC-Obr-076875 Oryza brachyantha 30.27 8.00e-67 246.00
IUUC-Ogl-077057 Oryza glaberrima 28.94 9.00e-65 239.00
IUUC-Ogu-078156 Oryza glumaepatula 29.24 3.00e-64 238.00
IUUC-Oin-079373 Oryza indica 28.80 1.00e-64 239.00
IUUC-Olo-080849 Oryza longistaminata 32.55 2.00e-48 185.00
IUUC-Ome-081654 Oryza meridionalis 29.96 1.00e-49 189.00
IUUC-Oni-082221 Oryza nivara 26.32 2.00e-50 191.00
IUUC-Opu-084103 Oryza punctata 29.77 3.00e-49 187.00
IUUC-Oru-084751 Oryza rufipogon 29.77 3.00e-49 188.00
IUUC-Osa-085584 Oryza sativa 28.80 4.00e-65 240.00
IUUC-Ola-086974 Oryzias latipes 39.30 9.00e-83 299.00
IUUC-Oga-088052 Otolemur garnettii 31.77 4.00e-84 303.00
IUUC-Oar-089509 Ovis aries 32.21 4.00e-89 320.00
IUUC-Ptr-090911 Pan troglodytes 32.36 2.00e-90 324.00
IUUC-Pan-092141 Papio anubis 32.49 5.00e-90 323.00
IUUC-Psi-093543 Pelodiscus sinensis 32.07 2.00e-85 308.00
IUUC-Pno-094952 Phaeosphaeria nodorum 34.54 5.00e-91 327.00
IUUC-Ppa-095881 Physcomitrella patens 27.80 4.00e-63 234.00
IUUC-Pfo-096739 Poecilia formosa 38.13 5.00e-79 286.00
IUUC-Pab-098641 Pongo abelii 32.58 3.00e-90 324.00
IUUC-Pop-099493 Populus trichocarpa 29.47 1.00e-67 249.00
IUUC-Pca-100599 Procavia capensis 36.23 7.00e-66 243.00
IUUC-Ppe-101874 Prunus persica 31.14 1.00e-69 255.00
IUUC-Pva-103009 Pteropus vampyrus 41.50 2.00e-74 271.00
IUUC-Pgr-103260 Puccinia graminis 34.05 5.00e-95 340.00
IUUC-Ptt-103711 Puccinia triticina 41.96 2.00e-86 311.00
IUUC-Pte-104337 Pyrenophora teres 34.18 1.00e-91 328.00
IUUC-Pyt-104475 Pyrenophora triticirepentis 34.31 2.00e-92 331.00
IUUC-Rno-105273 Rattus norvegicus 33.00 5.00e-92 330.00
IUUC-Sha-106758 Sarcophilus harrisii 32.41 3.00e-90 324.00
IUUC-Sja-107687 Schizosaccharomyces japonicus 42.70 7.00e-93 332.00
IUUC-Spo-108093 Schizosaccharomyces pombe 36.43 1.00e-100 358.00
IUUC-Ssl-108623 Sclerotinia sclerotiorum 39.33 2.00e-82 298.00
IUUC-Smo-109368 Selaginella moellendorffii 29.89 2.00e-63 235.00
IUUC-Sit-109699 Setaria italica 27.51 4.00e-61 227.00
IUUC-Sly-111063 Solanum lycopersicum 30.13 5.00e-66 243.00
IUUC-Sar-113199 Sorex araneus 39.40 1.00e-67 248.00
IUUC-Sbi-114745 Sorghum bicolor 31.79 9.00e-60 223.00
IUUC-Sre-115080 Sporisorium reilianum 40.33 6.00e-87 313.00
IUUC-Ssc-115666 Sus scrofa 32.83 1.00e-91 329.00
IUUC-Tgu-116877 Taeniopygia guttata 31.73 5.00e-87 313.00
IUUC-Tru-117580 Takifugu rubripes 38.65 2.00e-82 298.00
IUUC-Tsy-118946 Tarsius syrichta 32.78 4.00e-83 300.00
IUUC-Tni-119755 Tetraodon nigroviridis 39.57 5.00e-84 303.00
IUUC-Tca-120977 Theobroma cacao 28.40 9.00e-63 233.00
IUUC-Tre-122217 Trichoderma reesei 34.31 7.00e-87 313.00
IUUC-Tvi-122671 Trichoderma virens 34.05 2.00e-86 311.00
IUUC-Tae-125234 Triticum aestivum 29.39 2.00e-64 238.00
IUUC-Tme-126971 Tuber melanosporum 36.62 3.00e-109 387.00
IUUC-Tbe-127858 Tupaia belangeri 40.00 1.00e-24 106.00
IUUC-Ttr-128173 Tursiops truncatus 32.70 7.00e-89 319.00
IUUC-Uma-129322 Ustilago maydis 39.88 4.00e-87 313.00
IUUC-Vda-129682 Verticillium dahliae 31.81 2.00e-84 305.00
IUUC-Vpa-130607 Vicugna pacos 32.07 4.00e-86 310.00
IUUC-Vvi-131153 Vitis vinifera 31.06 3.00e-66 244.00
IUUC-Xtr-132208 Xenopus tropicalis 32.74 6.00e-86 310.00
IUUC-Xma-133098 Xiphophorus maculatus 39.30 9.00e-82 296.00
IUUC-Yli-134646 Yarrowia lipolytica 39.38 3.00e-108 383.00
IUUC-Zma-135920 Zea mays 31.04 9.00e-48 183.00
Created Date 25-Jun-2017

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