iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Rno-105049

Ensembl Protein ID

ENSRNOP00000073299.1

UniProt Accession

A0A0G2K556; A0A0G2K556_RAT

Genbank Protein ID

ENSRNOP00000073299

Protein Name

BRCA1-A complex subunit RAP80

Genbank Nucleotide ID

AABR07072536

Gene Name

Uimc1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000016891.7	ENSRNOT00000091200.1	ENSRNOP00000073299.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
microRNA	TRANSFAC	RAID2
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
UBD/Alpha-Helix/UIM	71.10	0.00e+00	930.00	IUUC-Hsa-045760

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MTGCVSETGE TRMLVTSEME LGKRMPRRKK KIKEASEGQN LEKKDLETTS SVSIKKKRRL 60
EDLFIVISDS DGEETKEENG LQKMKTKQSN RSKCLAKRKI AQMSEEEQFA LALKMSEQEA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCCGCTCGCG ACCCCCAGTG TTCGGGAGGC GCTGGGCGGA GCGGCCAGCT TGGCGGTGAG 60
TACGCGTCGC CTCGGCACTC CGCGGCCATC GGGTGCCGCC TGTTTCTCGC GGTCTGCCAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR003903--UIM_dom

PROSITE

PS50330--UIM

SMART

SM00726--UIM

Gene Ontology

GO:0070531--C:BRCA1-A complex
GO:0016604--C:nuclear body
GO:0006302--P:double-strand break repair
GO:0031572--P:G2 DNA damage checkpoint
GO:0070537--P:histone H2A K63-linked deubiquitination
GO:0045892--P:negative regulation of transcription, DNA-templated
GO:0045739--P:positive regulation of DNA repair
GO:0010212--P:response to ionizing radiation

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002335	Ailuropoda melanoleuca	70.85	0.00e+00	854.00
IUUC-Apl-003971	Anas platyrhynchos	42.16	1.00e-83	304.00
IUUC-Aca-004239	Anolis carolinensis	38.15	4.00e-63	236.00
IUUC-Ame-011593	Astyanax mexicanus	66.07	2.00e-18	88.20
IUUC-Bta-012883	Bos taurus	71.90	0.00e+00	974.00
IUUC-Cja-018904	Callithrix jacchus	68.60	0.00e+00	782.00
IUUC-Cfa-021279	Canis familiaris	72.55	0.00e+00	953.00
IUUC-Cpo-021857	Cavia porcellus	70.99	0.00e+00	920.00
IUUC-Csa-023278	Chlorocebus sabaeus	71.29	0.00e+00	917.00
IUUC-Cho-025002	Choloepus hoffmanni	78.87	3.00e-108	385.00
IUUC-Csv-025884	Ciona savignyi	44.44	5.90e-01	30.00
IUUC-Dre-028822	Danio rerio	64.91	2.00e-20	95.10
IUUC-Dno-029930	Dasypus novemcinctus	70.47	0.00e+00	895.00
IUUC-Dor-031008	Dipodomys ordii	64.98	6.00e-150	524.00
IUUC-Ete-032370	Echinops telfairi	62.26	0.00e+00	775.00
IUUC-Eca-033353	Equus caballus	74.73	0.00e+00	730.00
IUUC-Eeu-034724	Erinaceus europaeus	56.29	1.00e-177	616.00
IUUC-Fca-035721	Felis catus	71.23	0.00e+00	931.00
IUUC-Fal-036888	Ficedula albicollis	38.86	7.00e-92	331.00
IUUC-Gga-040932	Gallus gallus	39.57	9.00e-52	198.00
IUUC-Ggo-045465	Gorilla gorilla	71.05	0.00e+00	910.00
IUUC-Hsa-045760	Homo sapiens	71.29	0.00e+00	918.00
IUUC-Itr-048407	Ictidomys tridecemlineatus	79.94	2.00e-145	508.00
IUUC-Lch-050225	Latimeria chalumnae	38.03	4.00e-66	246.00
IUUC-Lpe-051538	Leersia perrieri	29.85	3.00e-02	34.30
IUUC-Loc-052879	Lepisosteus oculatus	29.22	7.00e-21	95.10
IUUC-Laf-053871	Loxodonta africana	67.78	0.00e+00	837.00
IUUC-Mcc-055478	Macaca mulatta	71.29	0.00e+00	914.00
IUUC-Meu-056617	Macropus eugenii	42.62	4.00e-103	369.00
IUUC-Mtr-057799	Medicago truncatula	45.71	3.30e-02	34.30
IUUC-Mga-059771	Meleagris gallopavo	38.57	1.00e-52	201.00
IUUC-Mmr-061450	Microcebus murinus	71.89	0.00e+00	924.00
IUUC-Mdo-061927	Monodelphis domestica	47.64	9.00e-154	537.00
IUUC-Mmu-063821	Mus musculus	84.43	0.00e+00	1143.00
IUUC-Mpu-065921	Mustela putorius furo	70.28	0.00e+00	817.00
IUUC-Mlu-067296	Myotis lucifugus	68.90	0.00e+00	867.00
IUUC-Nle-069257	Nomascus leucogenys	71.09	0.00e+00	914.00
IUUC-Opr-071016	Ochotona princeps	63.71	0.00e+00	775.00
IUUC-Ont-071282	Oreochromis niloticus	30.93	3.00e-20	93.60
IUUC-Ocu-074580	Oryctolagus cuniculus	70.97	0.00e+00	914.00
IUUC-Oga-088521	Otolemur garnettii	72.15	0.00e+00	924.00
IUUC-Ptr-091227	Pan troglodytes	71.63	0.00e+00	914.00
IUUC-Pan-092193	Papio anubis	67.69	0.00e+00	892.00
IUUC-Pfo-096691	Poecilia formosa	66.07	1.00e-19	91.70
IUUC-Pab-098460	Pongo abelii	70.31	0.00e+00	911.00
IUUC-Pca-100892	Procavia capensis	60.41	0.00e+00	770.00
IUUC-Pva-102816	Pteropus vampyrus	68.67	0.00e+00	801.00
IUUC-Pgr-103571	Puccinia graminis	24.17	9.90e-02	31.60
IUUC-Sha-106502	Sarcophilus harrisii	46.47	2.00e-117	416.00
IUUC-Sar-113108	Sorex araneus	56.99	6.00e-121	427.00
IUUC-Ssc-115306	Sus scrofa	71.57	0.00e+00	914.00
IUUC-Tgu-116746	Taeniopygia guttata	39.45	2.00e-56	214.00
IUUC-Tsy-119018	Tarsius syrichta	52.95	2.00e-132	466.00
IUUC-Tbe-127389	Tupaia belangeri	73.68	5.00e-169	587.00
IUUC-Ttr-128880	Tursiops truncatus	62.80	1.00e-101	363.00
IUUC-Xtr-132854	Xenopus tropicalis	33.84	4.00e-66	246.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence