• HOME
  • BROWSE
  • SEARCH
  • LINK
  • DOWNLOAD
  • USER GUIDE
  • Protein
  • Gene
  • Annotation
  • Classification
  • Domain Profile
  • Function
  • Protein Sequence
  • Nucleotide Sequence
  • Keyword
  • GO
  • Orthology
  • TOP

Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Cel-018387
Ensembl Protein ID F38E11.5
UniProt Accession Q20168; COPB2_CAEEL
Genbank Protein ID CAA92776.1
Protein Name Probable coatomer subunit beta'; Beta'-coat protein
Genbank Nucleotide ID Z68342
Gene Name copb-2; F38E11.5
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
WBGene00009542 F38E11.5 F38E11.5
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
microRNAmiRNAMapRAID2
Protein-protein Interaction
IIDiRefIndexPINAMentha
Post-translational Modifications (PTMs)
dbPAFdbPTMPhospho.ELM
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 4.90e-31 105.7 183 224
UBD/Beta-Prp 2.10e-69 234.3 14 296
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllks 38
           gH+ +v+c+++    + ++++sG+dD+ +k+WD+   +++++
   Q: 183  GHEKGVNCVDYyhgGEkPYIISGADDHLVKIWDYQNKTCVQT 224
           8*********99985579***************999988875 PP
   

   UBD/Beta-Prp
   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdkl 109
           ++++++cv+ +p +++l+++ ++g + +w+++t++l++s++ ++ +v+a kf p++++ vtgs+D++i+v++++t + vh +++h+d+++sl ++p+  ++
   Q: 14   RSDRVKCVDLHPVETWLLAALYNGNVHIWNYETQTLVKSFEVCDVPVRAAKFVPRKSWVVTGSDDMHIRVFNYNTLERVHQFEAHSDYLRSLVVHPTLPYV 114
           6899************************************************************************************************* PP
   S: 110  vsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsng..kelvsgsldgtvklw 207
           +s s+d  +++wd+++++ +++ ++gh++ v+ ++++p++ n ++++slD+tv++W+  ++    tl+g h++ v+++++ + g  ++++sg++d  vk+w
   Q: 115  ISSSDDMLVKMWDWDNKWAMKQSFEGHTHYVMQIAINPKDnNTFATASLDKTVKVWQFGSNVPNFTLEG-HEKGVNCVDYYHGGekPYIISGADDHLVKIW 214
           *******************************************************************99.*********9988888*************** PP
   S: 208  dlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvn 290
           d+q+++cv+tl gh +nv+sv f+p+  ++++gs+D ++r+W   +  l +tl++  ++v+++++ + g n ++ g ++++v 
   Q: 215  DYQNKTCVQTLDGHAQNVSSVCFHPELPLIITGSEDSTVRLWHANTYRLETTLNYGLERVWCIQA-QKGANTIAIGYDEGSVT 296
           *****************************************************************.77788877776666654 PP
   
Organism Caenorhabditis elegans
Functional Description
(View)

Functional Description


     The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity).
 The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity).
Protein Sequence
(Fasta)
MPLRLDVKRK LLARSDRVKC VDLHPVETWL LAALYNGNVH IWNYETQTLV KSFEVCDVPV 60
RAAKFVPRKS WVVTGSDDMH IRVFNYNTLE RVHQFEAHSD YLRSLVVHPT LPYVISSSDD 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Cel-018387|E3,WD_repeat;UBD,Beta-Prp|Caenorhabditis elegans
Please wait for a moment...
Nucleotide Sequence
(Fasta)
AACAAGATGC CTCTCCGACT TGATGTAAAA AGAAAGCTTC TGGCTCGTTC GGACCGCGTG 60
AAATGTGTCG ACTTGCATCC AGTCGAAACA TGGCTTCTAG CTGCTCTTTA CAATGGAAAT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Cel-018387|E3,WD_repeat;UBD,Beta-Prp|Caenorhabditis elegans
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0813--Transport
KW-0853--WD repeat
Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF04053--Coatomer_WDAD
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0000139--C:Golgi membrane
GO:0005198--F:structural molecule activity
GO:0009792--P:embryo development ending in birth or egg hatching
GO:0006888--P:ER to Golgi vesicle-mediated transport
GO:0006891--P:intra-Golgi vesicle-mediated transport
GO:0006886--P:intracellular protein transport
GO:0048599--P:oocyte development
GO:0006890--P:retrograde vesicle-mediated transport, Golgi to ER
KEGG cel:CELE_F38E11.5
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000222 Aegilops tauschii 56.79 0.00e+00 717.00
IUUC-Aml-002154 Ailuropoda melanoleuca 65.28 0.00e+00 1191.00
IUUC-Atr-003090 Amborella trichopoda 52.15 0.00e+00 947.00
IUUC-Apl-003976 Anas platyrhynchos 65.50 0.00e+00 1205.00
IUUC-Aca-004301 Anolis carolinensis 65.92 0.00e+00 1206.00
IUUC-Aly-005853 Arabidopsis lyrata 54.98 0.00e+00 987.00
IUUC-Ath-007635 Arabidopsis thaliana 53.72 0.00e+00 971.00
IUUC-Ago-007914 Ashbya gossypii 44.22 0.00e+00 725.00
IUUC-Acl-008237 Aspergillus clavatus 51.22 0.00e+00 897.00
IUUC-Afl-008535 Aspergillus flavus 50.25 0.00e+00 840.00
IUUC-Afu-008845 Aspergillus fumigatus 51.04 0.00e+00 875.00
IUUC-Ani-009135 Aspergillus nidulans 51.93 0.00e+00 856.00
IUUC-Ang-009654 Aspergillus niger 54.26 0.00e+00 795.00
IUUC-Aor-009939 Aspergillus oryzae 50.85 0.00e+00 894.00
IUUC-Ate-010355 Aspergillus terreus 50.55 0.00e+00 857.00
IUUC-Ame-010922 Astyanax mexicanus 57.84 0.00e+00 1041.00
IUUC-Bgr-012249 Blumeria graminis 51.11 0.00e+00 877.00
IUUC-Bta-013579 Bos taurus 67.04 0.00e+00 1058.00
IUUC-Bci-013866 Botrytis cinerea 52.33 0.00e+00 876.00
IUUC-Bdi-015046 Brachypodium distachyon 54.66 0.00e+00 976.00
IUUC-Bol-016012 Brassica oleracea 56.55 0.00e+00 996.00
IUUC-Bra-017758 Brassica rapa 53.95 0.00e+00 989.00
IUUC-Cja-019145 Callithrix jacchus 65.44 0.00e+00 1196.00
IUUC-Cfa-020564 Canis familiaris 65.44 0.00e+00 1195.00
IUUC-Cpo-022201 Cavia porcellus 65.40 0.00e+00 1196.00
IUUC-Cre-022938 Chlamydomonas reinhardtii 55.43 0.00e+00 925.00
IUUC-Csa-023383 Chlorocebus sabaeus 69.70 0.00e+00 883.00
IUUC-Cho-024454 Choloepus hoffmanni 62.87 0.00e+00 997.00
IUUC-Cin-025681 Ciona intestinalis 65.52 0.00e+00 1140.00
IUUC-Csv-026012 Ciona savignyi 65.25 0.00e+00 1122.00
IUUC-Cgl-026649 Colletotrichum gloeosporioides 47.92 0.00e+00 776.00
IUUC-Cne-026986 Cryptococcus neoformans 49.64 0.00e+00 862.00
IUUC-Cme-027219 Cyanidioschyzon merolae 45.63 0.00e+00 786.00
IUUC-Dre-027846 Danio rerio 66.30 0.00e+00 1195.00
IUUC-Dor-030462 Dipodomys ordii 64.67 0.00e+00 927.00
IUUC-Dse-031268 Dothistroma septosporum 50.73 0.00e+00 882.00
IUUC-Dme-031791 Drosophila melanogaster 62.12 0.00e+00 1102.00
IUUC-Ete-033166 Echinops telfairi 62.39 0.00e+00 745.00
IUUC-Eca-034180 Equus caballus 63.31 0.00e+00 1143.00
IUUC-Eeu-035086 Erinaceus europaeus 52.83 8.00e-140 489.00
IUUC-Fca-036265 Felis catus 65.44 0.00e+00 1194.00
IUUC-Fal-037202 Ficedula albicollis 66.62 0.00e+00 1155.00
IUUC-Fox-037711 Fusarium oxysporum 51.96 0.00e+00 815.00
IUUC-Fso-038268 Fusarium solani 51.22 0.00e+00 820.00
IUUC-Gmo-039046 Gadus morhua 65.13 0.00e+00 1194.00
IUUC-Ggr-039863 Gaeumannomyces graminis 51.47 0.00e+00 852.00
IUUC-Gga-041112 Gallus gallus 63.79 0.00e+00 1205.00
IUUC-Gac-041733 Gasterosteus aculeatus 64.78 0.00e+00 1154.00
IUUC-Gma-042910 Glycine max 54.41 0.00e+00 989.00
IUUC-Ggo-044984 Gorilla gorilla 65.44 0.00e+00 1196.00
IUUC-Hsa-046698 Homo sapiens 65.56 0.00e+00 1196.00
IUUC-Hvu-047669 Hordeum vulgare 65.73 8.00e-155 538.00
IUUC-Itr-048212 Ictidomys tridecemlineatus 65.40 0.00e+00 1191.00
IUUC-Kpa-049265 Komagataella pastoris 48.36 0.00e+00 833.00
IUUC-Lch-050473 Latimeria chalumnae 64.25 0.00e+00 1199.00
IUUC-Lpe-051579 Leersia perrieri 55.00 0.00e+00 963.00
IUUC-Loc-052675 Lepisosteus oculatus 64.19 0.00e+00 1207.00
IUUC-Lma-053218 Leptosphaeria maculans 49.82 0.00e+00 855.00
IUUC-Laf-053757 Loxodonta africana 64.64 0.00e+00 1185.00
IUUC-Mcc-054859 Macaca mulatta 65.44 0.00e+00 1196.00
IUUC-Meu-056174 Macropus eugenii 56.22 5.00e-126 444.00
IUUC-Mor-057264 Magnaporthe oryzae 51.47 0.00e+00 840.00
IUUC-Mpo-057538 Magnaporthe poae 51.40 0.00e+00 858.00
IUUC-Mtr-058310 Medicago truncatula 53.83 0.00e+00 990.00
IUUC-Mla-058937 Melampsora laricipopulina 48.69 0.00e+00 834.00
IUUC-Mga-059875 Meleagris gallopavo 63.76 0.00e+00 1201.00
IUUC-Mvi-060240 Microbotryum violaceum 48.58 0.00e+00 833.00
IUUC-Mmr-061261 Microcebus murinus 65.44 0.00e+00 1195.00
IUUC-Mdo-062076 Monodelphis domestica 65.18 0.00e+00 1200.00
IUUC-Mmu-063324 Mus musculus 65.56 0.00e+00 1197.00
IUUC-Mac-064636 Musa acuminata 52.74 0.00e+00 958.00
IUUC-Mpu-065961 Mustela putorius furo 65.33 0.00e+00 1191.00
IUUC-Mlu-067059 Myotis lucifugus 65.09 0.00e+00 1159.00
IUUC-Nfi-068277 Neosartorya fischeri 50.86 0.00e+00 866.00
IUUC-Ncr-068659 Neurospora crassa 50.24 0.00e+00 871.00
IUUC-Nle-069034 Nomascus leucogenys 65.44 0.00e+00 1196.00
IUUC-Opr-070334 Ochotona princeps 67.48 0.00e+00 1090.00
IUUC-Ont-071563 Oreochromis niloticus 64.89 0.00e+00 1187.00
IUUC-Oan-073416 Ornithorhynchus anatinus 66.88 0.00e+00 1139.00
IUUC-Ocu-074522 Oryctolagus cuniculus 65.44 0.00e+00 1194.00
IUUC-Oba-075760 Oryza barthii 53.72 0.00e+00 949.00
IUUC-Obr-076163 Oryza brachyantha 55.56 0.00e+00 963.00
IUUC-Ogl-077450 Oryza glaberrima 54.58 0.00e+00 969.00
IUUC-Ogu-078994 Oryza glumaepatula 53.72 0.00e+00 948.00
IUUC-Oin-079856 Oryza indica 53.81 0.00e+00 940.00
IUUC-Olo-080731 Oryza longistaminata 53.04 0.00e+00 933.00
IUUC-Ome-081554 Oryza meridionalis 51.00 0.00e+00 872.00
IUUC-Oni-082324 Oryza nivara 53.72 0.00e+00 949.00
IUUC-Opu-083400 Oryza punctata 52.12 0.00e+00 929.00
IUUC-Oru-084829 Oryza rufipogon 53.72 0.00e+00 949.00
IUUC-Osa-086026 Oryza sativa 54.58 0.00e+00 972.00
IUUC-Ola-087245 Oryzias latipes 65.33 0.00e+00 1192.00
IUUC-Olu-087655 Ostreococcus lucimarinus 54.98 0.00e+00 972.00
IUUC-Oga-088163 Otolemur garnettii 62.91 0.00e+00 1138.00
IUUC-Oar-089842 Ovis aries 65.44 0.00e+00 1197.00
IUUC-Ptr-090501 Pan troglodytes 65.44 0.00e+00 1196.00
IUUC-Pan-092011 Papio anubis 65.44 0.00e+00 1196.00
IUUC-Psi-093308 Pelodiscus sinensis 65.15 0.00e+00 1199.00
IUUC-Pma-094695 Petromyzon marinus 60.87 0.00e+00 1081.00
IUUC-Pno-094785 Phaeosphaeria nodorum 58.51 2.00e-102 365.00
IUUC-Ppa-095911 Physcomitrella patens 55.73 0.00e+00 1008.00
IUUC-Pfo-096587 Poecilia formosa 65.01 0.00e+00 1193.00
IUUC-Pab-097926 Pongo abelii 63.49 0.00e+00 1118.00
IUUC-Pop-099634 Populus trichocarpa 53.77 0.00e+00 981.00
IUUC-Pca-100965 Procavia capensis 64.34 0.00e+00 1157.00
IUUC-Ppe-101470 Prunus persica 53.89 0.00e+00 985.00
IUUC-Pva-102451 Pteropus vampyrus 64.67 0.00e+00 932.00
IUUC-Pgr-103453 Puccinia graminis 49.64 0.00e+00 870.00
IUUC-Ptt-103868 Puccinia triticina 49.76 0.00e+00 866.00
IUUC-Pte-104274 Pyrenophora teres 50.55 0.00e+00 888.00
IUUC-Pyt-104794 Pyrenophora triticirepentis 49.81 0.00e+00 841.00
IUUC-Rno-105979 Rattus norvegicus 58.05 0.00e+00 887.00
IUUC-Sce-106269 Saccharomyces cerevisiae 45.11 0.00e+00 741.00
IUUC-Sha-106905 Sarcophilus harrisii 65.56 0.00e+00 1201.00
IUUC-Sja-107838 Schizosaccharomyces japonicus 45.68 0.00e+00 765.00
IUUC-Spo-108299 Schizosaccharomyces pombe 44.65 0.00e+00 783.00
IUUC-Smo-108695 Selaginella moellendorffii 53.86 0.00e+00 952.00
IUUC-Sit-110692 Setaria italica 55.19 0.00e+00 968.00
IUUC-Sly-111525 Solanum lycopersicum 55.54 0.00e+00 989.00
IUUC-Stu-112906 Solanum tuberosum 53.83 0.00e+00 873.00
IUUC-Sar-113472 Sorex araneus 63.61 0.00e+00 848.00
IUUC-Sbi-114052 Sorghum bicolor 55.81 0.00e+00 989.00
IUUC-Sre-115040 Sporisorium reilianum 50.96 0.00e+00 895.00
IUUC-Ssc-115593 Sus scrofa 65.33 0.00e+00 1194.00
IUUC-Tgu-117239 Taeniopygia guttata 67.16 0.00e+00 1204.00
IUUC-Tru-118025 Takifugu rubripes 64.29 0.00e+00 1185.00
IUUC-Tsy-118824 Tarsius syrichta 64.82 0.00e+00 868.00
IUUC-Tni-120142 Tetraodon nigroviridis 65.93 0.00e+00 1182.00
IUUC-Tca-121613 Theobroma cacao 53.77 0.00e+00 986.00
IUUC-Tre-122072 Trichoderma reesei 52.63 0.00e+00 879.00
IUUC-Tvi-122546 Trichoderma virens 52.14 0.00e+00 863.00
IUUC-Tae-125321 Triticum aestivum 54.89 0.00e+00 962.00
IUUC-Tur-126283 Triticum urartu 48.01 0.00e+00 811.00
IUUC-Tme-127041 Tuber melanosporum 53.11 0.00e+00 910.00
IUUC-Tbe-127770 Tupaia belangeri 66.57 0.00e+00 969.00
IUUC-Ttr-129294 Tursiops truncatus 65.21 0.00e+00 1192.00
IUUC-Uma-129351 Ustilago maydis 50.12 0.00e+00 887.00
IUUC-Vda-129716 Verticillium dahliae 50.80 0.00e+00 882.00
IUUC-Vpa-130037 Vicugna pacos 53.33 3.00e-145 508.00
IUUC-Vvi-131689 Vitis vinifera 53.67 0.00e+00 983.00
IUUC-Xtr-132633 Xenopus tropicalis 63.84 0.00e+00 1210.00
IUUC-Xma-133347 Xiphophorus maculatus 62.58 0.00e+00 1197.00
IUUC-Yli-134455 Yarrowia lipolytica 48.53 0.00e+00 795.00
IUUC-Zma-135706 Zea mays 54.72 0.00e+00 982.00
Created Date 25-Jun-2017

https://dev.news.makassarkota.go.id/public/pgsoft-demo/ https://jdih.sumbawabaratkab.go.id/lato/pg-soft-demo/ https://dev.news.makassarkota.go.id/public/slot-gacor/ http://pbb.tanahbumbukab.go.id/-/slot-gacor/ slot gacor https://siakad.unipra.ac.id/sass/slot-gacor-x500/ http://kpm.dinus.ac.id/assets/images/berita/slot/
Copyright © 2004-2017.The CUCKOO Workgroup. All Rights Reserved