iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
microRNA	TRANSFAC	miRNAMap	RAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
CPLM	dbPAF	PhosphositePlus
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/Other	99.47	2.00e-70	264.00	IUUC-Hsa-046885

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MASNDYTQQA TQSYGAYPTQ PGQGYSQQSN QPYGQQSYSG YGQSADTSGY GQSSYGSSYG 60
QTQNTGYGTQ SAPQGYGSTG GYGSSQSSQS SYGQQSSYPG YGQQPAPSST SGSYGGSSQS 120

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Nucleotide Sequence
(Fasta)

CGCGGCGTCC CTTCGCAGTC GTCTGGAATC CTGTTGCTTG GCGGCCTGTG CGCGCGTGCG 60
CGGACATGGC TTCAAACGGT ATGTGAGAGC GCGAGGCGGC GATGGCGCGT CCCTGGGAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR034459--FUS
IPR012677--Nucleotide-bd_a/b_plait
IPR000504--RRM_dom
IPR001876--Znf_RanBP2

PROSITE

PS50102--RRM
PS01358--ZF_RANBP2_1
PS50199--ZF_RANBP2_2

Pfam

PF00076--RRM_1
PF00641--zf-RanBP

SMART

SM00360--RRM
SM00547--ZnF_RBZ

Gene Ontology

GO:0005737--C:cytoplasm
GO:0030425--C:dendrite
GO:0043197--C:dendritic spine
GO:0044327--C:dendritic spine head
GO:0043025--C:neuronal cell body
GO:0005654--C:nucleoplasm
GO:0043204--C:perikaryon
GO:0048471--C:perinuclear region of cytoplasm
GO:0005844--C:polysome
GO:0030331--F:estrogen receptor binding
GO:0035255--F:ionotropic glutamate receptor binding
GO:0031489--F:myosin V binding
GO:0000166--F:nucleotide binding
GO:0046965--F:retinoid X receptor binding
GO:0003723--F:RNA binding
GO:0046966--F:thyroid hormone receptor binding
GO:0003713--F:transcription coactivator activity
GO:0008270--F:zinc ion binding
GO:0071277--P:cellular response to calcium ion

KEGG

rno:317385

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001251	Ailuropoda melanoleuca	100.00	2.00e-60	226.00
IUUC-Bta-012425	Bos taurus	99.47	2.00e-71	263.00
IUUC-Cel-018311	Caenorhabditis elegans	39.56	1.00e-12	67.40
IUUC-Cja-019524	Callithrix jacchus	99.47	4.00e-71	261.00
IUUC-Cfa-020792	Canis familiaris	98.40	7.00e-70	258.00
IUUC-Cho-024940	Choloepus hoffmanni	96.07	2.00e-65	243.00
IUUC-Cin-025316	Ciona intestinalis	57.32	2.00e-24	105.00
IUUC-Dno-029527	Dasypus novemcinctus	99.47	1.00e-71	264.00
IUUC-Dor-031027	Dipodomys ordii	100.00	5.00e-61	228.00
IUUC-Dme-031985	Drosophila melanogaster	50.00	1.00e-22	100.00
IUUC-Ete-033069	Echinops telfairi	91.49	1.00e-49	190.00
IUUC-Eeu-034445	Erinaceus europaeus	99.47	2.00e-71	263.00
IUUC-Gac-042021	Gasterosteus aculeatus	84.44	2.00e-42	167.00
IUUC-Hsa-046885	Homo sapiens	99.47	2.00e-71	263.00
IUUC-Itr-048085	Ictidomys tridecemlineatus	99.47	2.00e-71	263.00
IUUC-Laf-053348	Loxodonta africana	90.48	1.00e-68	253.00
IUUC-Meu-056142	Macropus eugenii	97.34	7.00e-79	288.00
IUUC-Mmr-060597	Microcebus murinus	99.47	2.00e-71	263.00
IUUC-Mdo-062406	Monodelphis domestica	98.40	2.00e-79	290.00
IUUC-Mmu-063450	Mus musculus	99.62	4.00e-78	285.00
IUUC-Mpu-066821	Mustela putorius furo	98.94	5.00e-71	261.00
IUUC-Mlu-067643	Myotis lucifugus	97.36	4.00e-77	281.00
IUUC-Nle-069461	Nomascus leucogenys	99.47	2.00e-71	263.00
IUUC-Oan-073686	Ornithorhynchus anatinus	90.15	9.00e-75	274.00
IUUC-Oar-090388	Ovis aries	99.47	2.00e-71	261.00
IUUC-Ptr-091157	Pan troglodytes	99.47	1.00e-71	263.00
IUUC-Pab-098761	Pongo abelii	80.32	8.00e-49	187.00
IUUC-Pca-100284	Procavia capensis	100.00	2.00e-52	199.00
IUUC-Pva-102411	Pteropus vampyrus	98.94	3.00e-80	292.00
IUUC-Pgr-103625	Puccinia graminis	25.27	2.00e-02	33.90
IUUC-Ssc-116079	Sus scrofa	99.47	1.00e-71	264.00
IUUC-Tsy-119631	Tarsius syrichta	91.44	5.00e-69	255.00
IUUC-Tni-119747	Tetraodon nigroviridis	70.26	6.00e-59	221.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence