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Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Mmu-063994
UUCD1 version UUC-MuM-00858
Ensembl Protein ID ENSMUSP00000114904.1
UniProt Accession Q9Z0E3; Q9JLW0; Q9JLW1; Q9JLW2; Q9JLW3; Q9JLW4; Q9JLW5; Q9JLW6; Q9JLW7; Q9JLW8; Q9JLW9; Q9JLX0; AIRE_MOUSE
Genbank Protein ID AAD46421.1; AAF36481.1; AAF36482.1; CAA07620.1; AAD20444.1; CAB36909.1; AAF36460.1; AAF36461.1; AAF36462.1; AAF36463.1; AAF36464.1; AAF36465.1; AAF36466.1; AAF36467.1; AAF36468.1; AAF36469.1; AAF36470.1; CAB66141.1
Protein Name Autoimmune regulator; Autoimmune polyendocrinopathy candidiasis ectodermal dystrophy protein homolog
Genbank Nucleotide ID AF105002; AF128772; AF128773; AJ007715; AF079536; AJ132243; AF128115; AF128116; AF128117; AF128118; AF128119; AF128120; AF128121; AF128122; AF128123; AF128124; AF128125; AJ243821
Gene Name Aire
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSMUSG00000000731.15 ENSMUST00000145975.7 ENSMUSP00000120150.1
ENSMUSG00000000731.15 ENSMUST00000130972.7 ENSMUSP00000122659.1
ENSMUSG00000000731.15 ENSMUST00000128241.7 ENSMUSP00000114904.1
ENSMUSG00000000731.15 ENSMUST00000131028.7 ENSMUSP00000114808.1
ENSMUSG00000000731.15 ENSMUST00000155021.7 ENSMUSP00000122190.1
ENSMUSG00000000731.15 ENSMUST00000140636.7 ENSMUSP00000121477.1
ENSMUSG00000000731.15 ENSMUST00000148469.7 ENSMUSP00000118317.1
ENSMUSG00000000731.15 ENSMUST00000019257.14 ENSMUSP00000019257.8
ENSMUSG00000000731.15 ENSMUST00000105395.8 ENSMUSP00000101034.2
ENSMUSG00000000731.15 ENSMUST00000156417.7 ENSMUSP00000115162.1
ENSMUSG00000000731.15 ENSMUST00000105396.8 ENSMUSP00000101035.2
ENSMUSG00000000731.15 ENSMUST00000143735.7 ENSMUSP00000123678.1
ENSMUSG00000000731.15 ENSMUST00000154374.1 ENSMUSP00000117094.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpressGXD
DNA & RNA Element
microRNATRANSFACRepTarRAID2
Protein-protein Interaction
IIDiRefIndexPINAHINT
Mentha
Post-translational Modifications (PTMs)
dbPAFPhosphositePlus
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 activity/RING/PHD 9.40e-15 55.7 299 343
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
    + C+vC++gge l++C+ C ++fH aCl+++ +e p+ w C+ C
   Q: 299 DECAVCHDGGE----LICCDGCPRAFHLACLSPP-LQEIPSGL-WRCSCCL 343
    57*********....*******************.*******7.*****95 PP
   

Organism Mus musculus
Functional Description
(View)

Functional Description



     Transcription factor playing an essential role to promote self-tolerance in the thymus by regulating the expression of a wide array of self-antigens that have the commonality of being tissue-restricted in their expression pattern in the periphery, called tissue restricted antigens (TRA) (Probable). Binds to G-doublets in an A/T-rich environment; the preferred motif is a tandem repeat of 5'-. ATTGGTTA-3' combined with a 5'-TTATTA-3' box. Binds to nucleosomes (By similarity). Binds to chromatin and interacts selectively with histone H3 that is not methylated at 'Lys-4', not phosphorylated at 'Thr-3' and not methylated at 'Arg-2'. Functions as a sensor of histone H3 modifications that are important for the epigenetic regulation of gene expression. Mainly expressed by medullary thymic epithelial cells (mTECs), induces the expression of thousands of tissue-restricted proteins, which are presented on major histocompatibility complex class I (MHC-I) and MHC-II molecules to developing T-cells percolating through the thymic medulla (By similarity). Also induces self-tolerance through other mechanisms such as the regulation of the mTEC differentiation program (PubMed:19015306). Controls the medullary accumulation of thymic dendritic cells and the development of regulatory T-cell through the regulation of XCL1 expression (PubMed:21300913). Regulates the production of CCR4 and CCR7 ligands in medullary thymic epithelial cells and alters the coordinated maturation and migration of thymocytes (PubMed:19923453). In thimic B-cells, allows the presentation of licensing-dependent endogenous self-anitgen for negative selection (PubMed:26070482). In secondary lymphoid organs, induces functional inactivation of CD4(+) T-cells. Expressed by a distinct bone marrow-derived population, induces self-tolerance through a mechanism that does not require regulatory T-cells and is resitant to innate inflammatory stimuli (PubMed:23993652).
Transcription factor playing an essential role to promote self-tolerance in the thymus by regulating the expression of a wide array of self-antigens that have the commonality of being tissue-restricted in their expression pattern in the periphery, called tissue restricted antigens (TRA) (Probable). Binds to G-doublets in an A/T-rich environment; the preferred motif is a tandem repeat of 5'-. ATTGGTTA-3' combined with a 5'-TTATTA-3' box. Binds to nucleosomes (By similarity). Binds to chromatin and interacts selectively with histone H3 that is not methylated at 'Lys-4', not phosphorylated at 'Thr-3' and not methylated at 'Arg-2'. Functions as a sensor of histone H3 modifications that are important for the epigenetic regulation of gene expression. Mainly expressed by medullary thymic epithelial cells (mTECs), induces the expression of thousands of tissue-restricted proteins, which are presented on major histocompatibility complex class I (MHC-I) and MHC-II molecules to developing T-cells percolating through the thymic medulla (By similarity). Also induces self-tolerance through other mechanisms such as the regulation of the mTEC differentiation program (PubMed:19015306). Controls the medullary accumulation of thymic dendritic cells and the development of regulatory T-cell through the regulation of XCL1 expression (PubMed:21300913). Regulates the production of CCR4 and CCR7 ligands in medullary thymic epithelial cells and alters the coordinated maturation and migration of thymocytes (PubMed:19923453). In thimic B-cells, allows the presentation of licensing-dependent endogenous self-anitgen for negative selection (PubMed:26070482). In secondary lymphoid organs, induces functional inactivation of CD4(+) T-cells. Expressed by a distinct bone marrow-derived population, induces self-tolerance through a mechanism that does not require regulatory T-cells and is resitant to innate inflammatory stimuli (PubMed:23993652).
Protein Sequence
(Fasta)
MAGGDGMLRR LLRLHRTEIA VAIDSAFPLL HALADHDVVP EDKFQETLRL KEKEGCPQAF 60
HALLSWLLTR DSGAILDFWR ILFKDYNLER YSRLHSILDG FPKDVDLNQS RKGRKPLAGP 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Mmu-063994|E3,PHD|Mus musculus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
AGCACCACGA CACCCAAGGA AGGGAGAAGG GAACGCAAGC GCGCGTGGGC CAGCAGGGGG 60
CGCCGAGGCG CAGCCCCTGT GAGGAAGATG GCAGGTGGGG ATGGAATGCT ACGCCGTCTG 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Mmu-063994|E3,PHD|Mus musculus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0010--Activator
KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0238--DNA-binding
KW-0479--Metal-binding
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0677--Repeat
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR008087--AIRE
IPR004865--HSR_dom
IPR000770--SAND_dom
IPR010919--SAND_dom-like
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51414--HSR
PS50864--SAND
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF03172--HSR
PF00628--PHD
PF01342--SAND

PRINTS

PR01711--AIREGULATOR

SMART

SM00249--PHD
SM00258--SAND

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005622--C:intracellular
GO:0016604--C:nuclear body
GO:0005634--C:nucleus
GO:0003682--F:chromatin binding
GO:0042393--F:histone binding
GO:0042802--F:identical protein binding
GO:0000977--F:RNA polymerase II regulatory region sequence-specific DNA binding
GO:0003712--F:transcription cofactor activity
GO:0044212--F:transcription regulatory region DNA binding
GO:0045182--F:translation regulator activity
GO:0008270--F:zinc ion binding
GO:0002509--P:central tolerance induction to self antigen
GO:0032602--P:chemokine production
GO:0006959--P:humoral immune response
GO:0045060--P:negative thymic T cell selection
GO:0002458--P:peripheral T cell tolerance induction
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter
GO:0045893--P:positive regulation of transcription, DNA-templated
GO:2000410--P:regulation of thymocyte migration
GO:0006355--P:regulation of transcription, DNA-templated
GO:0097536--P:thymus epithelium morphogenesis
GO:0006351--P:transcription, DNA-templated

KEGG mmu:11634
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001612 Ailuropoda melanoleuca 70.02 3.00e-176 611.00
IUUC-Aca-004543 Anolis carolinensis 64.52 3.00e-23 99.00
IUUC-Bta-012988 Bos taurus 71.02 0.00e+00 657.00
IUUC-Bdi-014663 Brachypodium distachyon 61.70 3.00e-13 71.60
IUUC-Cja-019486 Callithrix jacchus 60.65 3.00e-88 318.00
IUUC-Cfa-021069 Canis familiaris 69.31 1.00e-167 583.00
IUUC-Cpo-021649 Cavia porcellus 66.79 1.00e-160 560.00
IUUC-Csa-023960 Chlorocebus sabaeus 70.63 1.00e-164 573.00
IUUC-Dre-028583 Danio rerio 39.64 7.00e-56 211.00
IUUC-Dno-029869 Dasypus novemcinctus 57.17 9.00e-116 410.00
IUUC-Dor-030263 Dipodomys ordii 83.65 1.00e-44 173.00
IUUC-Dse-031258 Dothistroma septosporum 39.66 9.00e-10 59.70
IUUC-Ete-032778 Echinops telfairi 84.69 2.00e-46 180.00
IUUC-Eca-034328 Equus caballus 69.49 2.00e-172 598.00
IUUC-Fca-035400 Felis catus 65.41 8.00e-161 560.00
IUUC-Fal-036644 Ficedula albicollis 43.07 3.00e-84 306.00
IUUC-Fox-038014 Fusarium oxysporum 38.00 3.00e-08 55.10
IUUC-Ggo-045250 Gorilla gorilla 70.84 2.00e-173 602.00
IUUC-Hsa-046603 Homo sapiens 70.79 1.00e-171 595.00
IUUC-Hvu-047073 Hordeum vulgare 58.70 4.00e-13 70.90
IUUC-Itr-048977 Ictidomys tridecemlineatus 69.11 2.00e-162 565.00
IUUC-Lch-050310 Latimeria chalumnae 39.73 7.00e-91 327.00
IUUC-Loc-052508 Lepisosteus oculatus 37.43 2.00e-90 326.00
IUUC-Lma-053053 Leptosphaeria maculans 26.06 7.00e-12 66.60
IUUC-Laf-054028 Loxodonta africana 64.64 9.00e-156 543.00
IUUC-Mcc-054935 Macaca mulatta 69.91 2.00e-175 608.00
IUUC-Mga-059318 Meleagris gallopavo 39.10 4.00e-48 185.00
IUUC-Mmr-061557 Microcebus murinus 58.78 7.00e-130 457.00
IUUC-Mdo-062475 Monodelphis domestica 50.09 6.00e-122 431.00
IUUC-Mpu-066347 Mustela putorius furo 67.67 0.00e+00 638.00
IUUC-Mlu-068239 Myotis lucifugus 60.27 4.00e-94 338.00
IUUC-Nle-069544 Nomascus leucogenys 90.74 5.00e-25 107.00
IUUC-Opr-071199 Ochotona princeps 68.29 4.00e-68 252.00
IUUC-Ont-072571 Oreochromis niloticus 29.54 3.00e-44 173.00
IUUC-Oan-073739 Ornithorhynchus anatinus 51.81 9.00e-137 480.00
IUUC-Ogl-077865 Oryza glaberrima 56.52 2.00e-12 68.20
IUUC-Olo-080499 Oryza longistaminata 50.88 2.00e-12 69.30
IUUC-Opu-083209 Oryza punctata 56.52 3.00e-12 68.60
IUUC-Ola-086528 Oryzias latipes 30.95 1.00e-47 184.00
IUUC-Oga-088353 Otolemur garnettii 70.71 0.00e+00 665.00
IUUC-Oar-090065 Ovis aries 71.61 9.00e-146 509.00
IUUC-Ptr-091347 Pan troglodytes 70.60 2.00e-164 572.00
IUUC-Pan-092423 Papio anubis 69.86 1.00e-175 609.00
IUUC-Psi-093798 Pelodiscus sinensis 51.78 5.00e-130 457.00
IUUC-Pfo-096145 Poecilia formosa 36.05 6.00e-31 128.00
IUUC-Pab-098369 Pongo abelii 76.29 3.00e-116 412.00
IUUC-Pca-100537 Procavia capensis 62.34 5.00e-158 550.00
IUUC-Pva-102639 Pteropus vampyrus 68.82 2.00e-166 578.00
IUUC-Rno-105285 Rattus norvegicus 88.77 0.00e+00 920.00
IUUC-Sha-107159 Sarcophilus harrisii 47.51 1.00e-122 433.00
IUUC-Sit-110355 Setaria italica 60.42 2.00e-12 68.90
IUUC-Sbi-113930 Sorghum bicolor 60.42 1.00e-12 69.30
IUUC-Ssc-115773 Sus scrofa 69.80 0.00e+00 643.00
IUUC-Tgu-116922 Taeniopygia guttata 50.15 7.00e-72 263.00
IUUC-Tru-118263 Takifugu rubripes 31.59 2.00e-55 209.00
IUUC-Tsy-119270 Tarsius syrichta 66.94 5.00e-90 325.00
IUUC-Tni-120138 Tetraodon nigroviridis 29.46 1.00e-55 210.00
IUUC-Tca-121757 Theobroma cacao 61.22 6.00e-14 73.90
IUUC-Tae-124715 Triticum aestivum 50.88 3.00e-13 71.60
IUUC-Tme-127204 Tuber melanosporum 55.32 2.00e-14 75.10
IUUC-Tbe-128077 Tupaia belangeri 65.64 0.00e+00 629.00
IUUC-Ttr-128781 Tursiops truncatus 72.93 3.00e-67 249.00
IUUC-Xma-133054 Xiphophorus maculatus 31.79 3.00e-58 219.00
Created Date 25-Jun-2017

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