iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Dme-031588

Ensembl Protein ID

FBpp0306837

UniProt Accession

Q7JYK1; Q7JYK1_DROME

Genbank Protein ID

AAL68264.1; AGB92554.1

Protein Name

RE10554p; Ribosomal protein L40, isoform B

Genbank Nucleotide ID

AY075451; AE014134

Gene Name

RpL40; CG2960; Dmel_CG2960

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
FBgn0003941	FBtr0334787	FBpp0306837

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
microRNA	RAID2
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UBL/NEDD8	2.00e-41	140.1	1	76
ULD/UDP/UBQ/UBQ_PIM	1.30e-29	102.0	1	73

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UBL/NEDD8

   S: 1    mlikvktLtgkeieieieesdtierikerveekeGiPPsqqrliyaGkqleddktaadynlekgsvLhLvLaLrGG 76
           m+i+vktLtgk+i++e+e+sdtie++k+++++keGiPP+qqrli+aGkqled++t++dyn++k+s+LhLvL+LrGG
   Q: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
           89*************************************************************************9 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesgvppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkk 73
           m+++vktl+gk+++lev+++dt+e++K+ki+++ g+pp+qq+LI+aGk+L+D +tLs+++i+++s++hlv++ 
   Q: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73
           99********************************************************************986 PP

Organism

Drosophila melanogaster

Protein Sequence
(Fasta)

MQIFVKTLTG KTITLEVEPS DTIENVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLSDYN 60
IQKESTLHLV LRLRGGIIEP SLRILAQKYN CDKMICRKCY ARLHPRATNC RKKKCGHTNN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCTCTTTTC CCTTTTTCTT TTGAATAGCA TTTGGTTGCA CGTTTCCTCT GGTGAGTTTC 60
CATTAAATAT ATTAAAAATA AACGAAAAAT CGCAATAACG TGGCAGAATG TAAACATATT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0687--Ribonucleoprotein
KW-0689--Ribosomal protein

Interpro

IPR001975--Ribosomal_L40e
IPR019956--Ubiquitin
IPR029071--Ubiquitin-rel_dom
IPR019954--Ubiquitin_CS
IPR000626--Ubiquitin_dom

PROSITE

PS00299--UBIQUITIN_1
PS50053--UBIQUITIN_2

Pfam

PF01020--Ribosomal_L40e
PF00240--ubiquitin

PRINTS

PR00348--UBIQUITIN

SMART

SM01377--Ribosomal_L40e
SM00213--UBQ

Gene Ontology

GO:0005840--C:ribosome
GO:0003735--F:structural constituent of ribosome
GO:0006412--P:translation

KEGG

dme:Dmel_CG2960

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001006	Aegilops tauschii	58.28	4.00e-43	166.00
IUUC-Aml-001246	Ailuropoda melanoleuca	97.66	8.00e-71	257.00
IUUC-Atr-003081	Amborella trichopoda	72.09	5.00e-44	168.00
IUUC-Apl-004069	Anas platyrhynchos	95.18	1.00e-43	166.00
IUUC-Ath-007098	Arabidopsis thaliana	91.41	2.00e-66	243.00
IUUC-Ago-007932	Ashbya gossypii	91.41	4.00e-66	241.00
IUUC-Acl-008350	Aspergillus clavatus	85.71	2.00e-62	229.00
IUUC-Afl-008554	Aspergillus flavus	92.19	1.00e-66	244.00
IUUC-Afu-008984	Aspergillus fumigatus	90.62	5.00e-65	238.00
IUUC-Ang-009609	Aspergillus niger	91.41	2.00e-65	239.00
IUUC-Aor-009991	Aspergillus oryzae	90.55	2.00e-64	236.00
IUUC-Ate-010252	Aspergillus terreus	92.00	6.00e-65	240.00
IUUC-Ame-010785	Astyanax mexicanus	95.79	5.00e-51	191.00
IUUC-Bgr-012115	Blumeria graminis	91.20	4.00e-64	236.00
IUUC-Bta-013360	Bos taurus	97.66	8.00e-71	257.00
IUUC-Bci-013851	Botrytis cinerea	92.19	1.00e-66	243.00
IUUC-Bdi-014499	Brachypodium distachyon	90.62	7.00e-66	241.00
IUUC-Bol-015961	Brassica oleracea	91.41	4.00e-66	241.00
IUUC-Cel-018677	Caenorhabditis elegans	92.97	6.00e-66	241.00
IUUC-Cja-019572	Callithrix jacchus	97.66	8.00e-71	257.00
IUUC-Cfa-020339	Canis familiaris	97.66	8.00e-71	257.00
IUUC-Cpo-021534	Cavia porcellus	97.66	8.00e-71	257.00
IUUC-Cre-022567	Chlamydomonas reinhardtii	92.19	2.00e-66	243.00
IUUC-Csa-023398	Chlorocebus sabaeus	97.66	8.00e-71	257.00
IUUC-Cin-025266	Ciona intestinalis	94.53	1.00e-68	250.00
IUUC-Csv-026105	Ciona savignyi	94.49	2.00e-68	249.00
IUUC-Cgl-026502	Colletotrichum gloeosporioides	92.00	1.00e-64	240.00
IUUC-Cne-026913	Cryptococcus neoformans	88.28	2.00e-64	236.00
IUUC-Cme-027344	Cyanidioschyzon merolae	93.41	5.00e-46	175.00
IUUC-Dre-028761	Danio rerio	97.66	1.00e-70	256.00
IUUC-Dno-028899	Dasypus novemcinctus	96.88	1.00e-69	253.00
IUUC-Ete-033120	Echinops telfairi	97.66	8.00e-71	257.00
IUUC-Eca-033787	Equus caballus	97.66	8.00e-71	257.00
IUUC-Fca-035725	Felis catus	97.66	8.00e-71	257.00
IUUC-Fox-037870	Fusarium oxysporum	92.19	8.00e-67	244.00
IUUC-Fso-038461	Fusarium solani	95.00	9.00e-41	156.00
IUUC-Gmo-039163	Gadus morhua	98.44	9.00e-72	260.00
IUUC-Ggr-040034	Gaeumannomyces graminis	92.19	5.00e-67	245.00
IUUC-Gga-040909	Gallus gallus	96.09	5.00e-70	254.00
IUUC-Gac-041640	Gasterosteus aculeatus	98.44	4.00e-71	258.00
IUUC-Gma-043254	Glycine max	91.41	9.00e-67	244.00
IUUC-Ggo-045411	Gorilla gorilla	97.66	8.00e-71	257.00
IUUC-Hsa-046609	Homo sapiens	77.54	3.00e-55	206.00
IUUC-Hvu-047579	Hordeum vulgare	70.59	1.00e-49	187.00
IUUC-Itr-048586	Ictidomys tridecemlineatus	97.66	2.00e-71	260.00
IUUC-Kpa-049279	Komagataella pastoris	90.62	2.00e-66	242.00
IUUC-Lch-049971	Latimeria chalumnae	97.66	3.00e-71	260.00
IUUC-Lpe-051472	Leersia perrieri	80.45	8.00e-52	197.00
IUUC-Loc-052117	Lepisosteus oculatus	98.44	2.00e-71	259.00
IUUC-Lma-053049	Leptosphaeria maculans	92.97	6.00e-67	244.00
IUUC-Laf-054284	Loxodonta africana	97.66	2.00e-71	261.00
IUUC-Mcc-055710	Macaca mulatta	96.15	7.00e-70	255.00
IUUC-Meu-056411	Macropus eugenii	97.66	8.00e-71	257.00
IUUC-Mor-057008	Magnaporthe oryzae	90.62	1.00e-65	240.00
IUUC-Mpo-057360	Magnaporthe poae	90.62	5.00e-66	241.00
IUUC-Mtr-058437	Medicago truncatula	90.62	2.00e-65	239.00
IUUC-Mla-059080	Melampsora laricipopulina	87.38	3.00e-49	185.00
IUUC-Mmr-061335	Microcebus murinus	91.41	5.00e-64	234.00
IUUC-Mdo-062752	Monodelphis domestica	97.66	8.00e-71	257.00
IUUC-Mmu-063548	Mus musculus	97.66	2.00e-71	261.00
IUUC-Mac-064915	Musa acuminata	90.62	1.00e-65	240.00
IUUC-Mpu-066513	Mustela putorius furo	97.66	8.00e-71	257.00
IUUC-Mlu-068010	Myotis lucifugus	95.31	3.00e-69	252.00
IUUC-Nfi-068358	Neosartorya fischeri	92.06	7.00e-65	238.00
IUUC-Ncr-068799	Neurospora crassa	92.19	2.00e-66	243.00
IUUC-Opr-070655	Ochotona princeps	97.66	8.00e-71	257.00
IUUC-Ont-072180	Oreochromis niloticus	98.41	4.00e-70	255.00
IUUC-Oan-073196	Ornithorhynchus anatinus	97.66	8.00e-71	257.00
IUUC-Oba-075092	Oryza barthii	91.41	2.00e-66	242.00
IUUC-Obr-076156	Oryza brachyantha	91.41	2.00e-66	243.00
IUUC-Ogl-077471	Oryza glaberrima	91.41	2.00e-66	242.00
IUUC-Ogu-078259	Oryza glumaepatula	91.41	2.00e-66	242.00
IUUC-Oin-079901	Oryza indica	91.41	2.00e-66	242.00
IUUC-Ome-081343	Oryza meridionalis	91.41	2.00e-66	242.00
IUUC-Oni-082301	Oryza nivara	85.26	4.00e-33	133.00
IUUC-Opu-083839	Oryza punctata	66.42	2.00e-36	146.00
IUUC-Oru-085252	Oryza rufipogon	91.41	2.00e-66	242.00
IUUC-Osa-085747	Oryza sativa	79.85	5.00e-51	192.00
IUUC-Ola-086333	Oryzias latipes	96.88	8.00e-70	254.00
IUUC-Olu-087819	Ostreococcus lucimarinus	84.38	6.00e-61	224.00
IUUC-Oga-088027	Otolemur garnettii	97.66	8.00e-71	257.00
IUUC-Oar-090419	Ovis aries	97.66	8.00e-71	257.00
IUUC-Ptr-091593	Pan troglodytes	97.66	8.00e-71	257.00
IUUC-Pan-091806	Papio anubis	93.75	2.00e-66	243.00
IUUC-Psi-093654	Pelodiscus sinensis	97.66	8.00e-71	257.00
IUUC-Ppa-095174	Physcomitrella patens	89.84	4.00e-65	238.00
IUUC-Pfo-096492	Poecilia formosa	98.44	4.00e-71	258.00
IUUC-Pab-098004	Pongo abelii	97.66	8.00e-71	257.00
IUUC-Pop-098929	Populus trichocarpa	90.62	1.00e-65	240.00
IUUC-Ppe-101497	Prunus persica	91.41	3.00e-66	242.00
IUUC-Pva-102945	Pteropus vampyrus	97.66	8.00e-71	257.00
IUUC-Pgr-103268	Puccinia graminis	88.28	6.00e-65	239.00
IUUC-Ptt-103804	Puccinia triticina	90.10	2.00e-51	193.00
IUUC-Pte-104101	Pyrenophora teres	92.19	2.00e-66	243.00
IUUC-Pyt-104639	Pyrenophora triticirepentis	92.19	4.00e-66	241.00
IUUC-Rno-105290	Rattus norvegicus	97.66	8.00e-71	257.00
IUUC-Sce-106249	Saccharomyces cerevisiae	91.41	3.00e-66	242.00
IUUC-Sha-106570	Sarcophilus harrisii	97.66	8.00e-71	257.00
IUUC-Sja-107834	Schizosaccharomyces japonicus	92.97	5.00e-67	244.00
IUUC-Spo-108045	Schizosaccharomyces pombe	92.19	3.00e-66	242.00
IUUC-Ssl-108670	Sclerotinia sclerotiorum	92.97	6.00e-67	244.00
IUUC-Sit-110085	Setaria italica	88.89	5.00e-65	239.00
IUUC-Sly-111884	Solanum lycopersicum	90.62	1.00e-65	240.00
IUUC-Stu-112385	Solanum tuberosum	90.08	8.00e-62	227.00
IUUC-Sar-112942	Sorex araneus	96.88	2.00e-70	256.00
IUUC-Sbi-114790	Sorghum bicolor	90.62	9.00e-66	240.00
IUUC-Sre-114908	Sporisorium reilianum	91.41	5.00e-66	241.00
IUUC-Ssc-116417	Sus scrofa	97.66	8.00e-71	257.00
IUUC-Tru-117557	Takifugu rubripes	98.44	1.00e-71	260.00
IUUC-Tni-119715	Tetraodon nigroviridis	98.44	1.00e-71	260.00
IUUC-Tca-121404	Theobroma cacao	91.41	3.00e-66	242.00
IUUC-Tvi-122611	Trichoderma virens	91.41	4.00e-67	245.00
IUUC-Tae-123019	Triticum aestivum	73.89	4.00e-61	225.00
IUUC-Tur-126527	Triticum urartu	90.62	7.00e-66	241.00
IUUC-Tme-127138	Tuber melanosporum	92.80	1.00e-65	241.00
IUUC-Tbe-127851	Tupaia belangeri	100.00	1.00e-40	157.00
IUUC-Ttr-128939	Tursiops truncatus	97.66	8.00e-71	257.00
IUUC-Uma-129619	Ustilago maydis	91.41	5.00e-66	241.00
IUUC-Vda-129775	Verticillium dahliae	90.48	2.00e-64	236.00
IUUC-Vvi-130859	Vitis vinifera	91.41	7.00e-66	241.00
IUUC-Xtr-131921	Xenopus tropicalis	97.66	8.00e-71	257.00
IUUC-Xma-134071	Xiphophorus maculatus	98.44	4.00e-71	258.00
IUUC-Yli-134671	Yarrowia lipolytica	92.19	3.00e-66	242.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence