iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Cel-018537

Ensembl Protein ID

F54E4.1b

UniProt Accession

J7S122; J7S122_CAEEL

Genbank Protein ID

CCM09377.2

Protein Name

RaBConnectin related

Genbank Nucleotide ID

BX284606

Gene Name

rbc-1; CELE_F54E4.1; F54E4.1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
WBGene00004313	F54E4.1a	F54E4.1a
WBGene00004313	F54E4.1b	F54E4.1b

Annotation

mRNA Expression
GEO
DNA & RNA Element
microRNA	RAID2
Post-translational Modifications (PTMs)
dbPAF	PHOSIDA
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.60e-12	46.8	2885	2917

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrt 32
           H ++ tc  + ++  ++ sG++ g i +WD+r+
   Q: 2885 HPEGATCALYvPNqQTIFSGGRHGEICLWDIRQ 2917
           6667788767977799**************986 PP

Organism

Caenorhabditis elegans

Protein Sequence
(Fasta)

MNAHQVITGA LNNGENVYAL GNIEGLTFTA CAVGSDVVIL DSDFNRVQII PESKNHLLVS 60
SLSCCQETGK IAVTYGNLVK ILEATNSGAD KSTLKSSIFQ FTWVETYSFT HKEPISSVQW 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAATGCTC ATCAGGTGAT CACAGGAGCG TTGAACAATG GTGAAAATGT ATATGCGTTA 60
GGAAATATTG AAGGGCTAAC CTTCACGGTG AGTTTATACA TATTTTTTTG ATTATGAATT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR022033--Rav1p_C
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12234--Rav1p_C
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0043291--C:RAVE complex
GO:0007035--P:vacuolar acidification
GO:0070072--P:vacuolar proton-transporting V-type ATPase complex assembly

KEGG

cel:CELE_F54E4.1

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001368	Ailuropoda melanoleuca	30.39	0.00e+00	1366.00
IUUC-Atr-002754	Amborella trichopoda	26.24	1.00e-16	80.10
IUUC-Apl-003377	Anas platyrhynchos	31.29	0.00e+00	919.00
IUUC-Aca-004649	Anolis carolinensis	32.11	0.00e+00	935.00
IUUC-Aly-006404	Arabidopsis lyrata	30.00	5.00e-23	103.00
IUUC-Ath-006612	Arabidopsis thaliana	29.52	5.00e-22	100.00
IUUC-Afu-009077	Aspergillus fumigatus	29.67	1.00e-30	127.00
IUUC-Ani-009437	Aspergillus nidulans	30.36	1.00e-32	134.00
IUUC-Ang-009742	Aspergillus niger	27.70	9.00e-29	121.00
IUUC-Ame-010919	Astyanax mexicanus	31.85	0.00e+00	763.00
IUUC-Bta-013088	Bos taurus	32.15	0.00e+00	753.00
IUUC-Bdi-014471	Brachypodium distachyon	26.45	2.00e-15	76.60
IUUC-Bol-016375	Brassica oleracea	22.96	5.00e-23	103.00
IUUC-Bra-016630	Brassica rapa	23.77	2.00e-24	107.00
IUUC-Cja-019137	Callithrix jacchus	31.08	0.00e+00	1363.00
IUUC-Cfa-021089	Canis familiaris	30.62	0.00e+00	1387.00
IUUC-Cpo-022459	Cavia porcellus	29.09	0.00e+00	1189.00
IUUC-Csa-023972	Chlorocebus sabaeus	30.57	0.00e+00	1386.00
IUUC-Cho-024762	Choloepus hoffmanni	31.04	5.00e-167	582.00
IUUC-Csv-026055	Ciona savignyi	28.81	1.00e-98	354.00
IUUC-Dre-028673	Danio rerio	31.20	0.00e+00	1382.00
IUUC-Dno-029855	Dasypus novemcinctus	29.65	0.00e+00	1309.00
IUUC-Dor-030381	Dipodomys ordii	31.43	1.00e-134	474.00
IUUC-Dme-031825	Drosophila melanogaster	33.57	0.00e+00	919.00
IUUC-Ete-033176	Echinops telfairi	30.30	0.00e+00	743.00
IUUC-Eca-033386	Equus caballus	30.53	0.00e+00	1374.00
IUUC-Eeu-035011	Erinaceus europaeus	32.06	1.00e-130	461.00
IUUC-Fca-035735	Felis catus	30.81	0.00e+00	1342.00
IUUC-Fal-036643	Ficedula albicollis	30.09	0.00e+00	1268.00
IUUC-Gmo-038687	Gadus morhua	31.26	0.00e+00	696.00
IUUC-Gga-040765	Gallus gallus	30.49	0.00e+00	1366.00
IUUC-Gac-042017	Gasterosteus aculeatus	30.49	0.00e+00	880.00
IUUC-Gma-044099	Glycine max	35.19	6.00e-25	110.00
IUUC-Ggo-045379	Gorilla gorilla	29.82	0.00e+00	1305.00
IUUC-Hsa-046758	Homo sapiens	30.41	0.00e+00	1392.00
IUUC-Hvu-047213	Hordeum vulgare	27.59	5.00e-15	73.60
IUUC-Itr-047982	Ictidomys tridecemlineatus	30.43	0.00e+00	1377.00
IUUC-Lch-049469	Latimeria chalumnae	31.25	0.00e+00	1178.00
IUUC-Lpe-051382	Leersia perrieri	25.42	1.00e-31	132.00
IUUC-Loc-052786	Lepisosteus oculatus	30.88	0.00e+00	1347.00
IUUC-Laf-054102	Loxodonta africana	30.03	0.00e+00	1357.00
IUUC-Mcc-055533	Macaca mulatta	30.56	0.00e+00	1385.00
IUUC-Meu-056627	Macropus eugenii	31.21	1.00e-123	437.00
IUUC-Mtr-058725	Medicago truncatula	31.53	1.00e-27	119.00
IUUC-Mga-059386	Meleagris gallopavo	30.59	0.00e+00	1330.00
IUUC-Mmr-060784	Microcebus murinus	30.82	0.00e+00	1330.00
IUUC-Mdo-062837	Monodelphis domestica	30.58	0.00e+00	1342.00
IUUC-Mmu-063696	Mus musculus	30.35	0.00e+00	1379.00
IUUC-Mac-065224	Musa acuminata	32.27	1.00e-21	99.00
IUUC-Mpu-066054	Mustela putorius furo	30.68	0.00e+00	1389.00
IUUC-Mlu-067458	Myotis lucifugus	32.47	0.00e+00	756.00
IUUC-Nfi-068420	Neosartorya fischeri	28.21	2.00e-28	120.00
IUUC-Nle-069401	Nomascus leucogenys	30.31	0.00e+00	1370.00
IUUC-Opr-070543	Ochotona princeps	30.26	3.00e-159	556.00
IUUC-Ont-071658	Oreochromis niloticus	31.97	0.00e+00	901.00
IUUC-Oan-072796	Ornithorhynchus anatinus	41.67	2.00e-35	140.00
IUUC-Ocu-074711	Oryctolagus cuniculus	30.03	0.00e+00	1342.00
IUUC-Oba-075826	Oryza barthii	31.84	7.00e-28	119.00
IUUC-Obr-076145	Oryza brachyantha	23.31	1.00e-31	132.00
IUUC-Ogu-078307	Oryza glumaepatula	31.84	7.00e-28	119.00
IUUC-Oin-080118	Oryza indica	31.84	3.00e-28	120.00
IUUC-Olo-080848	Oryza longistaminata	31.84	3.00e-28	120.00
IUUC-Oni-082792	Oryza nivara	32.14	4.00e-28	120.00
IUUC-Opu-084153	Oryza punctata	32.59	5.00e-29	123.00
IUUC-Oru-084415	Oryza rufipogon	31.84	5.00e-28	120.00
IUUC-Osa-085332	Oryza sativa	26.75	1.00e-19	90.10
IUUC-Ola-087560	Oryzias latipes	31.09	0.00e+00	892.00
IUUC-Oga-088816	Otolemur garnettii	30.95	0.00e+00	1358.00
IUUC-Oar-090063	Ovis aries	30.39	0.00e+00	1387.00
IUUC-Ptr-091058	Pan troglodytes	30.35	0.00e+00	1386.00
IUUC-Pan-092151	Papio anubis	31.22	0.00e+00	1400.00
IUUC-Psi-093590	Pelodiscus sinensis	32.48	0.00e+00	952.00
IUUC-Ppa-095505	Physcomitrella patens	26.27	2.00e-30	127.00
IUUC-Pfo-097521	Poecilia formosa	30.88	0.00e+00	1348.00
IUUC-Pab-098237	Pongo abelii	31.42	0.00e+00	1378.00
IUUC-Pop-098812	Populus trichocarpa	37.65	2.00e-22	101.00
IUUC-Pca-101008	Procavia capensis	33.80	8.00e-140	491.00
IUUC-Ppe-101610	Prunus persica	33.64	7.00e-26	112.00
IUUC-Pva-102432	Pteropus vampyrus	30.22	0.00e+00	810.00
IUUC-Rno-104981	Rattus norvegicus	30.52	0.00e+00	1371.00
IUUC-Sha-106955	Sarcophilus harrisii	30.14	0.00e+00	1292.00
IUUC-Sja-107657	Schizosaccharomyces japonicus	30.08	5.00e-25	109.00
IUUC-Smo-109573	Selaginella moellendorffii	26.73	1.00e-14	72.80
IUUC-Sit-109981	Setaria italica	25.93	8.00e-13	68.60
IUUC-Sly-110968	Solanum lycopersicum	30.32	1.00e-24	108.00
IUUC-Sar-112928	Sorex araneus	30.06	2.00e-80	294.00
IUUC-Ssc-116371	Sus scrofa	30.83	0.00e+00	1362.00
IUUC-Tgu-117271	Taeniopygia guttata	29.98	0.00e+00	1314.00
IUUC-Tru-118349	Takifugu rubripes	30.70	0.00e+00	1371.00
IUUC-Tsy-118837	Tarsius syrichta	29.66	0.00e+00	746.00
IUUC-Tni-120709	Tetraodon nigroviridis	31.15	0.00e+00	807.00
IUUC-Tca-121789	Theobroma cacao	27.90	9.00e-25	109.00
IUUC-Tae-125726	Triticum aestivum	32.57	5.00e-25	110.00
IUUC-Tbe-127760	Tupaia belangeri	29.85	0.00e+00	879.00
IUUC-Ttr-128991	Tursiops truncatus	30.08	0.00e+00	1127.00
IUUC-Vpa-130118	Vicugna pacos	32.27	9.00e-135	474.00
IUUC-Vvi-131584	Vitis vinifera	31.46	5.00e-26	113.00
IUUC-Xtr-132582	Xenopus tropicalis	30.87	0.00e+00	1349.00
IUUC-Xma-134022	Xiphophorus maculatus	30.81	0.00e+00	1366.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence