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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Dme-031815
Ensembl Protein ID FBpp0081255
UniProt Accession P34739; Q9VHY1; TTF2_DROME
Genbank Protein ID CAA44496.1; AAF54167.1
Protein Name Transcription termination factor 2; Protein lodestar; RNA polymerase II termination factor; Transcription release factor 2
Genbank Nucleotide ID X62629; AE014297
Gene Name lds; CG2684
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
FBgn0002542 FBtr0081758 FBpp0081255
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
microRNARAID2
Protein-protein Interaction
IIDiRefIndexPINAMentha
Post-translational Modifications (PTMs)
dbPAFdbPTMPhospho.ELMUniProt
PHOSIDA
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
E3 activity/RING/RING 27.81 3.00e-50 195.00 IUUC-Sce-106396
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Drosophila melanogaster
Functional Description
(View)

Functional Description


     DsDNA-dependent ATPase which acts as a transcription termination factor by coupling ATP hydrolysis with removal of RNA polymerase II from the DNA template.
 DsDNA-dependent ATPase which acts as a transcription termination factor by coupling ATP hydrolysis with removal of RNA polymerase II from the DNA template.
Protein Sequence
(Fasta)
MSSENSEYYS DKEEDSVVNN SSLGRSRKSS RLSKSSRLSK SSRPSSAGVV IDETQSEEEE 60
SQSSETAESE KSDESDNSQN SQESEDSEDD SVRPSARNTK RKPLGIPSDS EDEEDELEQR 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Dme-031815|E3,RING|Drosophila melanogaster
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CGATAGTTTG TGGCATTGTT TTGATCAGGT GGCATCTCCA TTCTGAAATA AATGGCGCTG 60
ATTTACAAGC ATTTTTTGTA AAATACCTAT AGCTAAAAAT GTCCAGTGAA AACAGCGAGT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Dme-031815|E3,RING|Drosophila melanogaster
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0067--ATP-binding
KW-0181--Complete proteome
KW-0903--Direct protein sequencing
KW-0238--DNA-binding
KW-0347--Helicase
KW-0378--Hydrolase
KW-0547--Nucleotide-binding
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0806--Transcription termination
Interpro

IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
PROSITE

PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
Pfam

PF00271--Helicase_C
PF00176--SNF2_N
SMART

SM00487--DEXDc
SM00490--HELICc
Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0005524--F:ATP binding
GO:0003677--F:DNA binding
GO:0008094--F:DNA-dependent ATPase activity
GO:0004386--F:helicase activity
GO:0006353--P:DNA-templated transcription, termination
GO:0007143--P:female meiotic division
GO:0034454--P:microtubule anchoring at centrosome
GO:0006355--P:regulation of transcription, DNA-templated
GO:0007283--P:spermatogenesis
KEGG dme:Dmel_CG2684
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000167 Aegilops tauschii 30.14 1.00e-71 263.00
IUUC-Aml-001237 Ailuropoda melanoleuca 32.36 1.00e-29 124.00
IUUC-Atr-003058 Amborella trichopoda 31.54 3.00e-73 270.00
IUUC-Apl-003679 Anas platyrhynchos 40.09 4.00e-126 445.00
IUUC-Aca-004994 Anolis carolinensis 34.02 5.00e-34 139.00
IUUC-Aly-005600 Arabidopsis lyrata 32.05 4.00e-81 296.00
IUUC-Ath-007079 Arabidopsis thaliana 31.95 1.00e-79 291.00
IUUC-Ago-007980 Ashbya gossypii 29.46 2.00e-57 216.00
IUUC-Acl-008053 Aspergillus clavatus 28.03 1.00e-57 217.00
IUUC-Afl-008697 Aspergillus flavus 27.45 9.00e-60 224.00
IUUC-Afu-008767 Aspergillus fumigatus 27.17 9.00e-58 218.00
IUUC-Ani-009435 Aspergillus nidulans 28.24 7.00e-49 188.00
IUUC-Ang-009874 Aspergillus niger 28.65 8.00e-63 234.00
IUUC-Aor-010130 Aspergillus oryzae 26.79 2.00e-56 213.00
IUUC-Ate-010469 Aspergillus terreus 30.79 2.00e-45 177.00
IUUC-Ame-011743 Astyanax mexicanus 29.34 1.00e-48 187.00
IUUC-Bgr-012000 Blumeria graminis 35.22 1.00e-52 201.00
IUUC-Bta-013391 Bos taurus 32.36 1.00e-36 147.00
IUUC-Bci-013956 Botrytis cinerea 25.22 5.00e-48 185.00
IUUC-Bdi-014496 Brachypodium distachyon 30.05 3.00e-71 263.00
IUUC-Bol-015995 Brassica oleracea 31.69 4.00e-81 295.00
IUUC-Bra-017004 Brassica rapa 31.85 9.00e-82 297.00
IUUC-Cja-019685 Callithrix jacchus 32.04 1.00e-36 147.00
IUUC-Cfa-020485 Canis familiaris 31.10 6.00e-54 205.00
IUUC-Cpo-021361 Cavia porcellus 30.24 1.00e-54 207.00
IUUC-Cre-022824 Chlamydomonas reinhardtii 28.62 2.00e-22 101.00
IUUC-Csa-023894 Chlorocebus sabaeus 32.36 4.00e-37 149.00
IUUC-Cho-024891 Choloepus hoffmanni 28.19 5.00e-32 132.00
IUUC-Csv-026168 Ciona savignyi 35.39 2.00e-111 395.00
IUUC-Cgl-026675 Colletotrichum gloeosporioides 28.51 2.00e-31 130.00
IUUC-Cne-026829 Cryptococcus neoformans 27.66 2.00e-58 220.00
IUUC-Cme-027241 Cyanidioschyzon merolae 30.40 2.00e-66 247.00
IUUC-Dre-027867 Danio rerio 31.25 2.00e-33 137.00
IUUC-Dno-029517 Dasypus novemcinctus 30.73 5.00e-55 209.00
IUUC-Dor-030651 Dipodomys ordii 37.92 3.00e-84 306.00
IUUC-Dse-031540 Dothistroma septosporum 28.36 1.00e-47 184.00
IUUC-Ete-032421 Echinops telfairi 31.65 7.00e-34 138.00
IUUC-Eca-034058 Equus caballus 30.97 4.00e-50 192.00
IUUC-Fca-035390 Felis catus 32.36 1.00e-29 124.00
IUUC-Fal-037486 Ficedula albicollis 41.38 3.00e-132 465.00
IUUC-Fox-037709 Fusarium oxysporum 26.08 5.00e-41 162.00
IUUC-Fso-038275 Fusarium solani 31.37 2.00e-44 173.00
IUUC-Gmo-038544 Gadus morhua 28.67 2.00e-33 137.00
IUUC-Ggr-040094 Gaeumannomyces graminis 25.18 3.00e-43 169.00
IUUC-Gga-040472 Gallus gallus 40.24 2.00e-128 452.00
IUUC-Gac-042401 Gasterosteus aculeatus 33.33 6.00e-39 155.00
IUUC-Gma-042995 Glycine max 30.70 8.00e-77 281.00
IUUC-Ggo-045628 Gorilla gorilla 30.52 8.00e-62 231.00
IUUC-Hsa-045930 Homo sapiens 31.07 1.00e-61 231.00
IUUC-Hvu-047747 Hordeum vulgare 30.72 2.00e-73 270.00
IUUC-Itr-048493 Ictidomys tridecemlineatus 31.21 1.00e-59 224.00
IUUC-Kpa-049222 Komagataella pastoris 26.25 3.00e-52 199.00
IUUC-Lch-050617 Latimeria chalumnae 28.32 1.00e-60 227.00
IUUC-Lpe-051123 Leersia perrieri 30.21 1.00e-71 264.00
IUUC-Loc-052785 Lepisosteus oculatus 29.17 1.00e-60 228.00
IUUC-Lma-053036 Leptosphaeria maculans 27.95 2.00e-35 144.00
IUUC-Laf-054309 Loxodonta africana 31.25 6.00e-54 205.00
IUUC-Mcc-055493 Macaca mulatta 32.48 1.00e-37 150.00
IUUC-Meu-056270 Macropus eugenii 34.90 4.00e-29 122.00
IUUC-Mor-057208 Magnaporthe oryzae 26.61 2.00e-35 144.00
IUUC-Mpo-057611 Magnaporthe poae 25.88 1.00e-44 174.00
IUUC-Mtr-058194 Medicago truncatula 29.78 2.00e-67 250.00
IUUC-Mla-059170 Melampsora laricipopulina 31.25 1.00e-29 124.00
IUUC-Mga-059553 Meleagris gallopavo 39.44 1.00e-126 447.00
IUUC-Mvi-060409 Microbotryum violaceum 30.26 2.00e-66 246.00
IUUC-Mmr-061043 Microcebus murinus 30.73 2.00e-54 206.00
IUUC-Mdo-062919 Monodelphis domestica 34.70 8.00e-34 138.00
IUUC-Mmu-064338 Mus musculus 31.39 4.00e-62 232.00
IUUC-Mac-065666 Musa acuminata 32.71 2.00e-75 276.00
IUUC-Mpu-066781 Mustela putorius furo 31.52 2.00e-29 123.00
IUUC-Mlu-068076 Myotis lucifugus 29.98 4.00e-54 205.00
IUUC-Nfi-068386 Neosartorya fischeri 27.75 4.00e-57 216.00
IUUC-Ncr-068723 Neurospora crassa 29.18 8.00e-42 165.00
IUUC-Nle-069947 Nomascus leucogenys 30.71 2.00e-60 226.00
IUUC-Opr-070388 Ochotona princeps 38.04 8.00e-26 112.00
IUUC-Ont-071782 Oreochromis niloticus 31.03 3.00e-37 149.00
IUUC-Oan-073331 Ornithorhynchus anatinus 33.78 2.00e-33 136.00
IUUC-Ocu-074705 Oryctolagus cuniculus 30.80 8.00e-61 228.00
IUUC-Oba-075316 Oryza barthii 29.17 2.00e-67 250.00
IUUC-Obr-076403 Oryza brachyantha 30.94 4.00e-72 265.00
IUUC-Ogl-077573 Oryza glaberrima 30.23 2.00e-71 263.00
IUUC-Ogu-078083 Oryza glumaepatula 29.30 3.00e-70 259.00
IUUC-Oin-079146 Oryza indica 30.23 4.00e-71 262.00
IUUC-Olo-080615 Oryza longistaminata 29.48 7.00e-74 271.00
IUUC-Ome-081448 Oryza meridionalis 29.70 5.00e-67 248.00
IUUC-Oni-082773 Oryza nivara 29.30 1.00e-70 261.00
IUUC-Opu-083675 Oryza punctata 29.14 2.00e-73 270.00
IUUC-Oru-084543 Oryza rufipogon 29.30 1.00e-70 260.00
IUUC-Osa-085686 Oryza sativa 30.23 5.00e-71 261.00
IUUC-Ola-086830 Oryzias latipes 30.88 1.00e-36 147.00
IUUC-Oga-088120 Otolemur garnettii 32.69 8.00e-30 125.00
IUUC-Oar-089293 Ovis aries 32.36 1.00e-36 147.00
IUUC-Ptr-091418 Pan troglodytes 31.07 1.00e-61 230.00
IUUC-Pan-091844 Papio anubis 37.09 2.00e-82 300.00
IUUC-Psi-093626 Pelodiscus sinensis 29.81 1.00e-59 224.00
IUUC-Pno-094916 Phaeosphaeria nodorum 27.37 2.00e-58 220.00
IUUC-Ppa-095291 Physcomitrella patens 28.53 4.00e-72 265.00
IUUC-Pfo-096540 Poecilia formosa 30.38 3.00e-64 239.00
IUUC-Pab-098010 Pongo abelii 30.89 2.00e-61 230.00
IUUC-Pop-099320 Populus trichocarpa 30.99 6.00e-74 271.00
IUUC-Pca-100648 Procavia capensis 32.40 6.00e-37 149.00
IUUC-Ppe-101820 Prunus persica 32.54 1.00e-74 274.00
IUUC-Pva-102896 Pteropus vampyrus 32.85 2.00e-32 134.00
IUUC-Pgr-103403 Puccinia graminis 27.31 7.00e-55 208.00
IUUC-Ptt-103966 Puccinia triticina 27.01 8.00e-54 204.00
IUUC-Pte-104122 Pyrenophora teres 27.80 5.00e-44 172.00
IUUC-Pyt-104793 Pyrenophora triticirepentis 28.09 1.00e-43 171.00
IUUC-Rno-106130 Rattus norvegicus 32.67 9.00e-38 151.00
IUUC-Sce-106396 Saccharomyces cerevisiae 27.29 3.00e-56 213.00
IUUC-Sha-107221 Sarcophilus harrisii 34.70 1.00e-33 138.00
IUUC-Sja-107985 Schizosaccharomyces japonicus 28.85 2.00e-32 134.00
IUUC-Spo-108338 Schizosaccharomyces pombe 25.89 2.00e-51 197.00
IUUC-Ssl-108383 Sclerotinia sclerotiorum 25.36 3.00e-48 186.00
IUUC-Smo-109469 Selaginella moellendorffii 29.32 5.00e-67 249.00
IUUC-Sit-110795 Setaria italica 29.06 1.00e-68 254.00
IUUC-Sly-111031 Solanum lycopersicum 30.46 1.00e-77 283.00
IUUC-Stu-112600 Solanum tuberosum 30.32 7.00e-78 285.00
IUUC-Sar-113719 Sorex araneus 30.91 5.00e-62 232.00
IUUC-Sbi-113927 Sorghum bicolor 30.50 1.00e-69 257.00
IUUC-Sre-114938 Sporisorium reilianum 31.67 4.00e-32 133.00
IUUC-Ssc-116186 Sus scrofa 32.36 6.00e-37 149.00
IUUC-Tru-117768 Takifugu rubripes 30.92 3.00e-56 213.00
IUUC-Tsy-118957 Tarsius syrichta 31.99 3.00e-33 136.00
IUUC-Tni-120618 Tetraodon nigroviridis 29.64 1.00e-61 231.00
IUUC-Tca-121146 Theobroma cacao 30.58 1.00e-76 280.00
IUUC-Tre-121896 Trichoderma reesei 26.93 2.00e-59 223.00
IUUC-Tvi-122597 Trichoderma virens 26.68 3.00e-57 216.00
IUUC-Tae-125934 Triticum aestivum 31.66 2.00e-44 174.00
IUUC-Tur-125999 Triticum urartu 30.58 1.00e-73 270.00
IUUC-Tme-127220 Tuber melanosporum 30.18 5.00e-49 189.00
IUUC-Tbe-127642 Tupaia belangeri 39.52 4.00e-70 259.00
IUUC-Ttr-129132 Tursiops truncatus 47.70 4.00e-84 305.00
IUUC-Uma-129441 Ustilago maydis 31.67 3.00e-32 133.00
IUUC-Vda-129942 Verticillium dahliae 28.78 5.00e-46 179.00
IUUC-Vpa-130672 Vicugna pacos 30.49 1.00e-54 207.00
IUUC-Vvi-131508 Vitis vinifera 29.58 1.00e-74 274.00
IUUC-Xtr-132730 Xenopus tropicalis 30.31 4.00e-65 242.00
IUUC-Xma-133384 Xiphophorus maculatus 32.43 4.00e-39 156.00
IUUC-Yli-134588 Yarrowia lipolytica 25.96 4.00e-59 222.00
IUUC-Zma-135801 Zea mays 27.70 2.00e-63 236.00
Created Date 25-Jun-2017

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