iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Sce-106389

Ensembl Protein ID

YNL187W

UniProt Accession

P53873; D6W100; SWT21_YEAST

Genbank Protein ID

CAA96081.1; DAA10366.1

Protein Name

Protein SWT21; Synthetic With TGS1 protein 21

Genbank Nucleotide ID

Z71463; BK006947

Gene Name

SWT21; YNL187W; N1615

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
YNL187W	YNL187W	YNL187W

Annotation

mRNA Expression
GEO	FFGED
Protein-protein Interaction
IID	iRefIndex	HINT	Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	24.36	1.20e+00	31.60	IUUC-Mmu-064351

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Saccharomyces cerevisiae

Functional Description
(View)

Involved in mRNA splicing. Helps to stabilize the U1 snRNP-5' splice site interaction.

Protein Sequence
(Fasta)

MEKKVICQDI FWSCDGTSFV SVHNDFGIRQ YLVPEESNTD KLNRNLLLPF TRFFRNQSIV 60
SCAIDPFYTL YNENSDRLAG DRIVVGGKNF PLQLYSLMDG QCILSYDTMN KINGEYETVY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAAAAGA AGGTAATATG TCAAGATATC TTTTGGTCAT GTGATGGTAC ATCGTTTGTT 60
TCTGTGCATA ATGATTTTGG CATCAGACAA TATTTAGTGC CGGAGGAAAG TAATACGGAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0507--mRNA processing
KW-0508--mRNA splicing
KW-0539--Nucleus
KW-1185--Reference proteome

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR017986--WD40_repeat_dom

Gene Ontology

GO:0005634--C:nucleus
GO:0000398--P:mRNA splicing, via spliceosome

KEGG

sce:YNL187W

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001234	Ailuropoda melanoleuca	25.64	2.50e-02	32.00
IUUC-Acl-008296	Aspergillus clavatus	46.88	5.00e-04	36.20
IUUC-Ani-009149	Aspergillus nidulans	24.11	1.00e-12	65.50
IUUC-Aor-009938	Aspergillus oryzae	21.40	1.00e-06	46.20
IUUC-Ate-010481	Aspergillus terreus	23.08	7.00e-14	69.70
IUUC-Bta-013395	Bos taurus	25.64	3.80e-02	32.00
IUUC-Cja-019863	Callithrix jacchus	25.64	3.10e-02	32.00
IUUC-Cfa-020285	Canis familiaris	25.33	7.40e-02	30.80
IUUC-Csa-024271	Chlorocebus sabaeus	25.64	3.70e-02	32.00
IUUC-Cho-024376	Choloepus hoffmanni	23.38	4.20e-02	31.20
IUUC-Dno-029022	Dasypus novemcinctus	25.64	2.20e-02	32.00
IUUC-Ete-032228	Echinops telfairi	22.90	1.60e-02	32.00
IUUC-Eca-033373	Equus caballus	25.64	1.80e-02	32.00
IUUC-Eeu-034463	Erinaceus europaeus	24.36	2.60e-02	31.60
IUUC-Fca-036184	Felis catus	25.64	1.60e-02	32.30
IUUC-Gac-042297	Gasterosteus aculeatus	23.32	6.00e-06	42.00
IUUC-Ggo-045208	Gorilla gorilla	25.64	3.90e-02	31.60
IUUC-Hsa-045988	Homo sapiens	25.64	3.70e-02	32.00
IUUC-Itr-048371	Ictidomys tridecemlineatus	25.64	2.40e-02	32.00
IUUC-Lch-050503	Latimeria chalumnae	30.30	2.40e-01	28.90
IUUC-Laf-054272	Loxodonta africana	26.92	1.20e-02	33.10
IUUC-Meu-055934	Macropus eugenii	22.05	1.80e-01	29.30
IUUC-Mvi-060351	Microbotryum violaceum	26.09	2.00e-06	44.30
IUUC-Mmr-060662	Microcebus murinus	25.64	4.60e-02	31.60
IUUC-Mdo-062918	Monodelphis domestica	26.67	3.60e-02	32.00
IUUC-Mmu-064351	Mus musculus	24.36	4.40e-02	31.60
IUUC-Mpu-066325	Mustela putorius furo	25.64	2.20e-02	31.60
IUUC-Nle-069692	Nomascus leucogenys	25.64	4.30e-02	31.60
IUUC-Oan-073079	Ornithorhynchus anatinus	26.92	8.00e-03	33.50
IUUC-Ocu-073910	Oryctolagus cuniculus	25.64	3.30e-02	32.00
IUUC-Oga-088523	Otolemur garnettii	25.64	3.40e-02	32.00
IUUC-Ptr-091173	Pan troglodytes	25.64	3.70e-02	31.60
IUUC-Pan-091750	Papio anubis	25.64	3.70e-02	32.00
IUUC-Psi-093053	Pelodiscus sinensis	28.00	5.00e-03	33.90
IUUC-Pab-098189	Pongo abelii	25.64	3.60e-02	32.00
IUUC-Pva-103126	Pteropus vampyrus	25.58	8.80e-02	30.40
IUUC-Pte-104073	Pyrenophora teres	21.65	7.00e-06	43.50
IUUC-Pyt-104496	Pyrenophora triticirepentis	20.92	3.00e-06	44.70
IUUC-Rno-105653	Rattus norvegicus	25.64	3.20e-02	32.00
IUUC-Sha-107178	Sarcophilus harrisii	28.07	7.70e-02	30.00
IUUC-Spo-108316	Schizosaccharomyces pombe	25.19	1.00e-04	38.50
IUUC-Sar-113613	Sorex araneus	25.64	1.70e-02	32.30
IUUC-Tgu-116963	Taeniopygia guttata	23.44	5.00e-03	33.90
IUUC-Tsy-119075	Tarsius syrichta	26.92	9.00e-03	33.10
IUUC-Tbe-128141	Tupaia belangeri	25.64	1.60e-02	32.30

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence